Carg18441 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg18441
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr20: 891199 .. 892428 (-)
RNA-Seq ExpressionCarg18441
SyntenyCarg18441
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATCGTCTAACAATATTTTTATCTAGTTGGGCTGTCTACTTGGACCACAGGTTTCTCCTACCATTTGCATCTAATCGGGCTAGGTTTTTGGGTGATCTATCAAGCCGAGAAATGGGTATGTCCTATGCTATCAATTTCCGTGTTGGTATTCTCAAGTTCGACAATTTTACGCGCTGAAAATGGCATTTTTTTTTAAACAGGAAAAGATGGCTTTCAAGTTCATCGATGGGTAGAGATTGACGTCTCTGCTCGTGCTGCGTGCGGCGATCCAATTACAAAACATGGATTCAACGGTACACATCTATCCTAATGCAGCAAGTTTAAATTATGGAAAAAAAAAAGGGATCATTTTGCCGGAAAACAAACAGTAGTACCATTTTAAATACTCATCGTGAAGGGATTTTACATATCCAACACAAAGAGGCAGTGGCTGGTATTCAAGCTGTTGGAGCTGGCTTGGTACGAATAGCCGGGAAATCAAGCAGCACAATCTTGTCAATGGCTGCCGAGAAAGTTGCAGAGAATTCAACATGCTTGGGATGCCCGACAAACGCAGCATGAGCTTCCTTGTTCTCGAATGTCATCAAGAAGGCGTGCGTGAAGCCCTGTGTAAGCATCTCTGGTCCCTCTATTTCCTGTCCCCTGTTTTCACCTTAAAACATTCATCTTTCTTCTTCCTTCCACGATAAATCATATGAAAAAAAATCATGTTTACCCTCTGATTAATTTTAACACATCTTGAAACTAAATTATATAATTATCACAAAATTACATAAAACAAAACATTCTACATCATGTCATAAGATTGTCCATCCCAGCCATAAAAATACTTAAACTTTGGGTCCAACAAGAGCGGAGGTTTGTAACATTTTTATATATAATATTTCCATTTTAGAAATGTAGGTGAAAAGTTAGAGAGAGCCTTAGAATCTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGTAGTATTTTAATCTGAGTACTAAGAGGTGCCATTATCCCTTCCTTCGCTTCACTCTTGGGTTCACACCAAGCTAAAAAGCATCCAACAAAACTGAAGAAACCAATACCCAAAGAATAGCTTTGAAATTTTAATATTTTAACAAAGGTGGGGAAGATTACCACTCAAAGGATTTGACAGCTTCGACTTCAGAGACGAGATTCTCCATGCCTTTGAGAATCTCTTCTACCGCCGCTCCTTCCTTAAACTTTACGAGCACCAAATGCT

mRNA sequence

ATGTATCGTCTAACAATATTTTTATCTAGTTGGGCTGTCTACTTGGACCACAGGTTTCTCCTACCATTTGCATCTAATCGGGCTAGGTTTTTGGGTGATCTATCAAGCCGAGAAATGGGAAAAGATGGCTTTCAAGTTCATCGATGGGTAGAGATTGACGTCTCTGCTCGTGCTGCGTGCGGCGATCCAATTACAAAACATGGATTCAACGGTACACATCTATCCTAATGCAGCAAGTTTAAATTATGGAAAAAAAAAAGGGATCATTTTGCCGGAAAACAAACAGTAGTACCATTTTAAATACTCATCGTGAAGGGATTTTACATATCCAACACAAAGAGGCAGTGGCTGGTATTCAAGCTGTTGGAGCTGGCTTGGTACGAATAGCCGGGAAATCAAGCAGCACAATCTTGTCAATGGCTGCCGAGAAAGTTGCAGAGAATTCAACATGCTTGGGATGCCCGACAAACGCAGCATGAGCTTCCTTGTTCTCGAATGTCATCAAGAAGGCGTGCGTGAAGCCCTGTGTAAGCATCTCTGGTCCCTCTATTTCCTGTCCCCTGTTTTCACCTTAAAACGATTTGACAGCTTCGACTTCAGAGACGAGATTCTCCATGCCTTTGAGAATCTCTTCTACCGCCGCTCCTTCCTTAAACTTTACGAGCACCAAATGCT

Coding sequence (CDS)

ATGTATCGTCTAACAATATTTTTATCTAGTTGGGCTGTCTACTTGGACCACAGGTTTCTCCTACCATTTGCATCTAATCGGGCTAGGTTTTTGGGTGATCTATCAAGCCGAGAAATGGGAAAAGATGGCTTTCAAGTTCATCGATGGGTAGAGATTGACGTCTCTGCTCGTGCTGCGTGCGGCGATCCAATTACAAAACATGGATTCAACGGTACACATCTATCCTAA

Protein sequence

MYRLTIFLSSWAVYLDHRFLLPFASNRARFLGDLSSREMGKDGFQVHRWVEIDVSARAACGDPITKHGFNGTHLS
Homology
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BLAST of Carg18441 vs. NCBI nr
Match: KAG7010361.1 (hypothetical protein SDJN02_27154, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 160.6 bits (405), Expect = 5.2e-36
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MYRLTIFLSSWAVYLDHRFLLPFASNRARFLGDLSSREMGKDGFQVHRWVEIDVSARAAC 60
          MYRLTIFLSSWAVYLDHRFLLPFASNRARFLGDLSSREMGKDGFQVHRWVEIDVSARAAC
Sbjct: 1  MYRLTIFLSSWAVYLDHRFLLPFASNRARFLGDLSSREMGKDGFQVHRWVEIDVSARAAC 60

Query: 61 GDPITKHGFNGTHLS 76
          GDPITKHGFNGTHLS
Sbjct: 61 GDPITKHGFNGTHLS 75

The following BLAST results are available for this feature:
BLAST of Carg18441 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7010361.15.2e-36100.00hypothetical protein SDJN02_27154, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg18441 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg18441 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg18441 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18441-RACarg18441-RAmRNA