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Carg18418 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCCAGATCCATGTTACTTGTGTTTCTGTTCGTTATTCTCATTATCACTTCTCAATTCGAGTGGAAGCAACAACTAGTACCTGAGGTTGATACCAGGGTAAACTCCCAGAAGCAGCAACAGATATCAACGAGGGAAGAAGCAGTTAAGGAGAAGGTAATATGTCCTCTACAATTACACCATCAACCGTACCGTTTTCTTTTAAATGAACTTATGCTTTATGATGGCCTAAATTGAAATACTTGTGAATATCTGTTTGTCATTCGTTTAGGAAGGCTGAATGATTAGTTCAGGCGCACAGGGGTGTAGAGTGTGGATCGGTAGCTGTGTCTATCGTGCTACATTCAGGGTGCAGGATACTTTCTAATTATGTAATGTAGTGATTTCTTTTCCCTGGGTATAACTTTAGGATGGCATGTTAAATAGTTTGGCTGGTCGAGCAATAGAAGAAGAATGAATTAGTAATAAATTTAACTCGAGAATTCTAGGAGTTCTAGGATAGGACTAGTGAGCAAACATTGCATGATTCATGCTTCCATTATGAGTTTCAGTTTCCCCCCTAAAAAAAGAAAAAAGTGATCCTCTCTATATGATGCACTAGAAATAAAATAGTAATCAGGCTGATACTCTTGGCAAGATTTCACCAATGAACATTTTAATGATTTAGCATATACATGGCAATAAGTTTGATAATCGAGCCTTTGCTGTGGACATAGTACTGGGTTTGAAGCAGCAATTGTAACTATTGCCAAATTAACGCTTGATTTTTCTGTGGAAGTGTCTAAAAGATATGGAGATTACCCAATCTATCTGAATAGTATTAATCTTTGTTTTCAATTGTTATATTTTGATTATTAGCAAGCCACTCTTTGAGCTGAAGAAAATGTCTTAATTACCAATTTGGTTATATCTCATGTGATTTATTAAACTACTTTTTGCTGCAGATGTTACCTTAATTTTAGGACATTAAAAGCTTGCTTGTCCTAGTAGAGAAACGAAGAAAGTATAGGTCCTAAGTAGATTGTATGTCCTGGTTAGGAAAGGAGTTGCTCCACACGGTTGCTTGAAAAGTAGCGATTATTTTATGTTTTCTGCCTAAGGTTAGACTTGAATGAAAAATATTTATGTCCTGCATATGGTCAAATGAAAGCTTAAATTATATCTACCCCTGAAAAATGAGCTACATGTCACTGAATGCTGAGGCCAGTTAAATCATAAACGCATAAATTCTTAACCAGGTAGAGAATCATTATCATCCTCTTCATTCTGAGTGCTGTTTGTTGGCCTTTTTTTTTTCTATCTGCCTTTCAATTAGTGTAAGTTTCTTTTTGAATCTCTTGTGTGATCCTATAATGTGTTGTCTGAGTCACATAGATGAGCCCTTGAGATTGTATCTGTTAAATATTTCCTTCATGTTAATTTTTTTTAAGAATTCTTCTTTGAGCATGCCTTTAAAGAAATTTATAGAAGAACCATGAAATGTGTGTATCTTACAATTTTATGTTCAAACTAAATATCGTGTTGTAATTTTAAATTTTGACTACATTTTTTCGGTTTGTTATAAATTATACATTTCTGTTTCATGGAGTTATTGAAGGGGTGATATTGAGTTTATCAAAAGTTGGAAGACATCTTCAAAACTTGTTTAAGAGCAGAATTGAAAACTATTTGTTTAGGGGTTGAAAAAGTAATCTGGCCTTGAGTAAATGATAAGCATCTTTTCAGTCTAAAATCTTGTCTGTTGAATGTTATAGACTTAATAAACTACACCAATAGAAGTTAGGTTTAGCTTGACGACTCCTCCATGCTCATGTTAGATAGAACCATGGGGCGCCTTTTTGGGTAAAAAACAGAAAAATATAACTACAAAAAGAAAAAGGATGAGGGATATTGGTATCTGCACCCGGTAAGCCCATTTAACAGGGACAAAAATAATAAACCAGTTGAAAGCTGAATTTGACAGGCACAAAATTTAAAAACCAGATGAAGAGAATCCTTAAGTCTAATTTTTGTTATGATCGTTACCGTCATTATATTTTTATTTAGATTCATATCCTGACTTAGGCTGTGGCACGTTGAATTGCACCTGGCTTTACTTTCAGATTTGGTATAAACGTTGCTGGTTGCTGAGAGGATGATAAGTTACAGGAATTCAAAAATCTGTCAGTTGATGTGGCAGAACTAATGAATTAATAGAAGTTCATAGAGAAACATCATATCAATCCCAAATTTCAATTGCTTGAGCATTGCCTACGAGCCGCCATTTTAGATGGAATGTATAACATGACATCAAGGGGGATCGTGGGGTTCTTGGAAGTGCTGGTACTTATTTATTACCTGAGGAATAGACAGTTTCTTGCCACCTTTTCAGATAGACAACTTATCCTGCCGTTTAGTTCCCATTTTTGTCTGAGCTTTGTTTTCTACATCGTGATATTCTACTACGTTTTCTATTCTAGTATAATCATTTTACACCTATTCTATTGAATTGGTGCAGATATTGTTGTCACAAGAAAGGAATATCCAGAGGCTCAATGAAGTTGTGCGAAGCCTCCGGGAACAGTTGCAGCAGTGCAGAGGCAGGAACATTACGAATGGGACAGCCCTTCTGAGTGGACATATTCTTGAGCTCGAACGACTTCATGTATTAGAGGACTGATGCAAGAACTTCATGGCCAACCACTGATTGCTCGTCTGTTCACTGGTTTTGGTATGGCTTTTTCTTGTGTAGATATATCTCCTATGTTCATAATTGTTTGGCATGTTATTGGCCGTGGATAAAAATATTCCACCAAGCATGAAATTTAATTCTCCTACCAAGGTAGGTTTTTCTGTTCCTCGAAGATGAGAGGTATGTACGATTTAAATTTAATGATAATCATGGTTTATCATTCATTTCTCCTAGTAACTATCGGCACTATTTAGGCTCAATTTACAACCTTAGTCCTCAAGTTTATTCATTACTTATAAACTCATGATCATCCCCTTAATTAGCCAATGTCAGACTCCCTCCCAACAATCCTCAACAATCATTCCCTTGAACAAAGTACACCACAAAGCCTCTCCTGAGGCCTATGTAGCCCTCAAACGACCTCCTCTTAATCGAGGTTCGACCTCTTTCTTTGGAACCCTCGAACAAAATACACCATTTGTTCGATACTTGAATCATTTTTTACTACACTTTCGAGGCTACCAACTTATTTGTCCGACACTTGAGGATTCAATTAGCATGACTAAGTTAAGGGCATGACTCTGTACCATATTAGGAACCACGACTCTCCACAGTTGTATGATATTGTCTACTTTGAGAATAGACTTTCATGGTTTTGCTTTTGGTTTCCTCAGAAGGTCTCATACCAATGGAGATGTATTCCTTACTTATAAACCCATGATCATCTCCTTAACTTGTCAATGTTGGACTCCTTCCCAACAATCCTAAAAAATATGTACTATCGACTAAGAAGTCGAAAGTTTGAATGTCTACCCTACACATTCTTGAACACATTCTTGAACAAGAAAGCATGAAGAATGAACCAATTATGGTCAGCAACTGTAAATTTCATTTTCTTCCAATTTTAGGGCCTAAAGGCATATATTTCTGTTCGTAGGCTTACAAGTATGATACCTTTATCTATGTTTCCATTAAAATGCCGTTATTTCTTGGTGAGACATTCATTTCTATACCATTTTGTCAAAGTAAAATTATTGTACCCTCCTATTTTACTAGCCTTGTGTGTCTTCCTTCTAGTAACATATTCTGGTCTTTTTTTTTTTTTTTTTTTTCATCTTTTAACTGTTGAAGATGAATTTATGTCTTATTATTCTTTTTATCAAATGTCTACTCTCACTAAATGTTTTGAGAAAACTAATATGTGAATTGAACTGGGTATGTTTTTTTGGGTGCCAATTGTTAGTAGAATATCTTTCTTAAGGGATCCATCACCTATGCAACCGAGTCATTTGGTGTCGGGTAAGTTAATCTACCTCATGTCATATAAAATGGATTATGTTCAATTTTATAGGTCGGAATATCTGATAGTTCAAGTAATTAG ATGTCCAGATCCATGTTACTTGTGTTTCTGTTCGTTATTCTCATTATCACTTCTCAATTCGAGTGGAAGCAACAACTAGTACCTGAGGTTGATACCAGGGTAAACTCCCAGAAGCAGCAACAGATATCAACGAGGGAAGAAGCAGTTAAGGAGAAGATATTGTTGTCACAAGAAAGGAATATCCAGAGGCTCAATGAAGTTGTGCGAAGCCTCCGGGAACAGTTGCAGCAGTGCAGAGGCAGGAACATTACGAATGGGACAGCCCTTCTGAGTGGACATATTCTTGAGCTCGAACGACTTCATGTCGGAATATCTGATAGTTCAAGTAATTAG ATGTCCAGATCCATGTTACTTGTGTTTCTGTTCGTTATTCTCATTATCACTTCTCAATTCGAGTGGAAGCAACAACTAGTACCTGAGGTTGATACCAGGGTAAACTCCCAGAAGCAGCAACAGATATCAACGAGGGAAGAAGCAGTTAAGGAGAAGATATTGTTGTCACAAGAAAGGAATATCCAGAGGCTCAATGAAGTTGTGCGAAGCCTCCGGGAACAGTTGCAGCAGTGCAGAGGCAGGAACATTACGAATGGGACAGCCCTTCTGAGTGGACATATTCTTGAGCTCGAACGACTTCATGTCGGAATATCTGATAGTTCAAGTAATTAG MSRSMLLVFLFVILIITSQFEWKQQLVPEVDTRVNSQKQQQISTREEAVKEKILLSQERNIQRLNEVVRSLREQLQQCRGRNITNGTALLSGHILELERLHVGISDSSSN Homology
BLAST of Carg18418 vs. NCBI nr
Match: KAG7010338.1 (hypothetical protein SDJN02_27131, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 199.5 bits (506), Expect = 1.5e-47 Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0
BLAST of Carg18418 vs. NCBI nr
Match: XP_022944563.1 (uncharacterized protein LOC111448980 [Cucurbita moschata] >XP_022985896.1 uncharacterized protein LOC111483810 [Cucurbita maxima]) HSP 1 Score: 185.3 bits (469), Expect = 2.9e-43 Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0
BLAST of Carg18418 vs. NCBI nr
Match: XP_023512164.1 (uncharacterized protein LOC111776968 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 182.6 bits (462), Expect = 1.9e-42 Identity = 101/102 (99.02%), Postives = 101/102 (99.02%), Query Frame = 0
BLAST of Carg18418 vs. NCBI nr
Match: XP_016900731.1 (PREDICTED: NAC domain-containing protein 40 [Cucumis melo] >KAA0061724.1 NAC domain-containing protein 40 [Cucumis melo var. makuwa]) HSP 1 Score: 174.9 bits (442), Expect = 3.9e-40 Identity = 98/103 (95.15%), Postives = 101/103 (98.06%), Query Frame = 0
BLAST of Carg18418 vs. NCBI nr
Match: XP_038902642.1 (uncharacterized protein LOC120089290 [Benincasa hispida]) HSP 1 Score: 173.7 bits (439), Expect = 8.7e-40 Identity = 98/104 (94.23%), Postives = 100/104 (96.15%), Query Frame = 0
BLAST of Carg18418 vs. ExPASy TrEMBL
Match: A0A6J1J9H8 (uncharacterized protein LOC111483810 OS=Cucurbita maxima OX=3661 GN=LOC111483810 PE=4 SV=1) HSP 1 Score: 185.3 bits (469), Expect = 1.4e-43 Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0
BLAST of Carg18418 vs. ExPASy TrEMBL
Match: A0A6J1FY60 (uncharacterized protein LOC111448980 OS=Cucurbita moschata OX=3662 GN=LOC111448980 PE=4 SV=1) HSP 1 Score: 185.3 bits (469), Expect = 1.4e-43 Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0
BLAST of Carg18418 vs. ExPASy TrEMBL
Match: A0A5A7V382 (NAC domain-containing protein 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold212G00990 PE=4 SV=1) HSP 1 Score: 174.9 bits (442), Expect = 1.9e-40 Identity = 98/103 (95.15%), Postives = 101/103 (98.06%), Query Frame = 0
BLAST of Carg18418 vs. ExPASy TrEMBL
Match: A0A1S4DXM3 (NAC domain-containing protein 40 OS=Cucumis melo OX=3656 GN=LOC103491667 PE=4 SV=1) HSP 1 Score: 174.9 bits (442), Expect = 1.9e-40 Identity = 98/103 (95.15%), Postives = 101/103 (98.06%), Query Frame = 0
BLAST of Carg18418 vs. ExPASy TrEMBL
Match: A0A0A0KEF2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G425770 PE=4 SV=1) HSP 1 Score: 172.2 bits (435), Expect = 1.2e-39 Identity = 97/103 (94.17%), Postives = 100/103 (97.09%), Query Frame = 0
BLAST of Carg18418 vs. TAIR 10
Match: AT5G22280.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44280.1); Has 82 Blast hits to 82 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 101.3 bits (251), Expect = 5.1e-22 Identity = 63/106 (59.43%), Postives = 82/106 (77.36%), Query Frame = 0
BLAST of Carg18418 vs. TAIR 10
Match: AT3G44280.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22280.1); Has 82 Blast hits to 82 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 100.1 bits (248), Expect = 1.1e-21 Identity = 67/107 (62.62%), Postives = 82/107 (76.64%), Query Frame = 0
BLAST of Carg18418 vs. TAIR 10
Match: AT5G22280.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44280.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 80.5 bits (197), Expect = 9.4e-16 Identity = 51/96 (53.12%), Postives = 68/96 (70.83%), Query Frame = 0
BLAST of Carg18418 vs. TAIR 10
Match: AT5G06265.1 (hyaluronan mediated motility receptor-related ) HSP 1 Score: 65.5 bits (158), Expect = 3.1e-11 Identity = 40/94 (42.55%), Postives = 62/94 (65.96%), Query Frame = 0
BLAST of Carg18418 vs. TAIR 10
Match: AT5G06265.2 (hyaluronan mediated motility receptor-related ) HSP 1 Score: 65.5 bits (158), Expect = 3.1e-11 Identity = 40/94 (42.55%), Postives = 62/94 (65.96%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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