Carg18418 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg18418
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPeptidyl-prolyl cis-trans isomerase G
LocationCarg_Chr20: 758081 .. 762132 (-)
RNA-Seq ExpressionCarg18418
SyntenyCarg18418
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCAGATCCATGTTACTTGTGTTTCTGTTCGTTATTCTCATTATCACTTCTCAATTCGAGTGGAAGCAACAACTAGTACCTGAGGTTGATACCAGGGTAAACTCCCAGAAGCAGCAACAGATATCAACGAGGGAAGAAGCAGTTAAGGAGAAGGTAATATGTCCTCTACAATTACACCATCAACCGTACCGTTTTCTTTTAAATGAACTTATGCTTTATGATGGCCTAAATTGAAATACTTGTGAATATCTGTTTGTCATTCGTTTAGGAAGGCTGAATGATTAGTTCAGGCGCACAGGGGTGTAGAGTGTGGATCGGTAGCTGTGTCTATCGTGCTACATTCAGGGTGCAGGATACTTTCTAATTATGTAATGTAGTGATTTCTTTTCCCTGGGTATAACTTTAGGATGGCATGTTAAATAGTTTGGCTGGTCGAGCAATAGAAGAAGAATGAATTAGTAATAAATTTAACTCGAGAATTCTAGGAGTTCTAGGATAGGACTAGTGAGCAAACATTGCATGATTCATGCTTCCATTATGAGTTTCAGTTTCCCCCCTAAAAAAAGAAAAAAGTGATCCTCTCTATATGATGCACTAGAAATAAAATAGTAATCAGGCTGATACTCTTGGCAAGATTTCACCAATGAACATTTTAATGATTTAGCATATACATGGCAATAAGTTTGATAATCGAGCCTTTGCTGTGGACATAGTACTGGGTTTGAAGCAGCAATTGTAACTATTGCCAAATTAACGCTTGATTTTTCTGTGGAAGTGTCTAAAAGATATGGAGATTACCCAATCTATCTGAATAGTATTAATCTTTGTTTTCAATTGTTATATTTTGATTATTAGCAAGCCACTCTTTGAGCTGAAGAAAATGTCTTAATTACCAATTTGGTTATATCTCATGTGATTTATTAAACTACTTTTTGCTGCAGATGTTACCTTAATTTTAGGACATTAAAAGCTTGCTTGTCCTAGTAGAGAAACGAAGAAAGTATAGGTCCTAAGTAGATTGTATGTCCTGGTTAGGAAAGGAGTTGCTCCACACGGTTGCTTGAAAAGTAGCGATTATTTTATGTTTTCTGCCTAAGGTTAGACTTGAATGAAAAATATTTATGTCCTGCATATGGTCAAATGAAAGCTTAAATTATATCTACCCCTGAAAAATGAGCTACATGTCACTGAATGCTGAGGCCAGTTAAATCATAAACGCATAAATTCTTAACCAGGTAGAGAATCATTATCATCCTCTTCATTCTGAGTGCTGTTTGTTGGCCTTTTTTTTTTCTATCTGCCTTTCAATTAGTGTAAGTTTCTTTTTGAATCTCTTGTGTGATCCTATAATGTGTTGTCTGAGTCACATAGATGAGCCCTTGAGATTGTATCTGTTAAATATTTCCTTCATGTTAATTTTTTTTAAGAATTCTTCTTTGAGCATGCCTTTAAAGAAATTTATAGAAGAACCATGAAATGTGTGTATCTTACAATTTTATGTTCAAACTAAATATCGTGTTGTAATTTTAAATTTTGACTACATTTTTTCGGTTTGTTATAAATTATACATTTCTGTTTCATGGAGTTATTGAAGGGGTGATATTGAGTTTATCAAAAGTTGGAAGACATCTTCAAAACTTGTTTAAGAGCAGAATTGAAAACTATTTGTTTAGGGGTTGAAAAAGTAATCTGGCCTTGAGTAAATGATAAGCATCTTTTCAGTCTAAAATCTTGTCTGTTGAATGTTATAGACTTAATAAACTACACCAATAGAAGTTAGGTTTAGCTTGACGACTCCTCCATGCTCATGTTAGATAGAACCATGGGGCGCCTTTTTGGGTAAAAAACAGAAAAATATAACTACAAAAAGAAAAAGGATGAGGGATATTGGTATCTGCACCCGGTAAGCCCATTTAACAGGGACAAAAATAATAAACCAGTTGAAAGCTGAATTTGACAGGCACAAAATTTAAAAACCAGATGAAGAGAATCCTTAAGTCTAATTTTTGTTATGATCGTTACCGTCATTATATTTTTATTTAGATTCATATCCTGACTTAGGCTGTGGCACGTTGAATTGCACCTGGCTTTACTTTCAGATTTGGTATAAACGTTGCTGGTTGCTGAGAGGATGATAAGTTACAGGAATTCAAAAATCTGTCAGTTGATGTGGCAGAACTAATGAATTAATAGAAGTTCATAGAGAAACATCATATCAATCCCAAATTTCAATTGCTTGAGCATTGCCTACGAGCCGCCATTTTAGATGGAATGTATAACATGACATCAAGGGGGATCGTGGGGTTCTTGGAAGTGCTGGTACTTATTTATTACCTGAGGAATAGACAGTTTCTTGCCACCTTTTCAGATAGACAACTTATCCTGCCGTTTAGTTCCCATTTTTGTCTGAGCTTTGTTTTCTACATCGTGATATTCTACTACGTTTTCTATTCTAGTATAATCATTTTACACCTATTCTATTGAATTGGTGCAGATATTGTTGTCACAAGAAAGGAATATCCAGAGGCTCAATGAAGTTGTGCGAAGCCTCCGGGAACAGTTGCAGCAGTGCAGAGGCAGGAACATTACGAATGGGACAGCCCTTCTGAGTGGACATATTCTTGAGCTCGAACGACTTCATGTATTAGAGGACTGATGCAAGAACTTCATGGCCAACCACTGATTGCTCGTCTGTTCACTGGTTTTGGTATGGCTTTTTCTTGTGTAGATATATCTCCTATGTTCATAATTGTTTGGCATGTTATTGGCCGTGGATAAAAATATTCCACCAAGCATGAAATTTAATTCTCCTACCAAGGTAGGTTTTTCTGTTCCTCGAAGATGAGAGGTATGTACGATTTAAATTTAATGATAATCATGGTTTATCATTCATTTCTCCTAGTAACTATCGGCACTATTTAGGCTCAATTTACAACCTTAGTCCTCAAGTTTATTCATTACTTATAAACTCATGATCATCCCCTTAATTAGCCAATGTCAGACTCCCTCCCAACAATCCTCAACAATCATTCCCTTGAACAAAGTACACCACAAAGCCTCTCCTGAGGCCTATGTAGCCCTCAAACGACCTCCTCTTAATCGAGGTTCGACCTCTTTCTTTGGAACCCTCGAACAAAATACACCATTTGTTCGATACTTGAATCATTTTTTACTACACTTTCGAGGCTACCAACTTATTTGTCCGACACTTGAGGATTCAATTAGCATGACTAAGTTAAGGGCATGACTCTGTACCATATTAGGAACCACGACTCTCCACAGTTGTATGATATTGTCTACTTTGAGAATAGACTTTCATGGTTTTGCTTTTGGTTTCCTCAGAAGGTCTCATACCAATGGAGATGTATTCCTTACTTATAAACCCATGATCATCTCCTTAACTTGTCAATGTTGGACTCCTTCCCAACAATCCTAAAAAATATGTACTATCGACTAAGAAGTCGAAAGTTTGAATGTCTACCCTACACATTCTTGAACACATTCTTGAACAAGAAAGCATGAAGAATGAACCAATTATGGTCAGCAACTGTAAATTTCATTTTCTTCCAATTTTAGGGCCTAAAGGCATATATTTCTGTTCGTAGGCTTACAAGTATGATACCTTTATCTATGTTTCCATTAAAATGCCGTTATTTCTTGGTGAGACATTCATTTCTATACCATTTTGTCAAAGTAAAATTATTGTACCCTCCTATTTTACTAGCCTTGTGTGTCTTCCTTCTAGTAACATATTCTGGTCTTTTTTTTTTTTTTTTTTTTCATCTTTTAACTGTTGAAGATGAATTTATGTCTTATTATTCTTTTTATCAAATGTCTACTCTCACTAAATGTTTTGAGAAAACTAATATGTGAATTGAACTGGGTATGTTTTTTTGGGTGCCAATTGTTAGTAGAATATCTTTCTTAAGGGATCCATCACCTATGCAACCGAGTCATTTGGTGTCGGGTAAGTTAATCTACCTCATGTCATATAAAATGGATTATGTTCAATTTTATAGGTCGGAATATCTGATAGTTCAAGTAATTAG

mRNA sequence

ATGTCCAGATCCATGTTACTTGTGTTTCTGTTCGTTATTCTCATTATCACTTCTCAATTCGAGTGGAAGCAACAACTAGTACCTGAGGTTGATACCAGGGTAAACTCCCAGAAGCAGCAACAGATATCAACGAGGGAAGAAGCAGTTAAGGAGAAGATATTGTTGTCACAAGAAAGGAATATCCAGAGGCTCAATGAAGTTGTGCGAAGCCTCCGGGAACAGTTGCAGCAGTGCAGAGGCAGGAACATTACGAATGGGACAGCCCTTCTGAGTGGACATATTCTTGAGCTCGAACGACTTCATGTCGGAATATCTGATAGTTCAAGTAATTAG

Coding sequence (CDS)

ATGTCCAGATCCATGTTACTTGTGTTTCTGTTCGTTATTCTCATTATCACTTCTCAATTCGAGTGGAAGCAACAACTAGTACCTGAGGTTGATACCAGGGTAAACTCCCAGAAGCAGCAACAGATATCAACGAGGGAAGAAGCAGTTAAGGAGAAGATATTGTTGTCACAAGAAAGGAATATCCAGAGGCTCAATGAAGTTGTGCGAAGCCTCCGGGAACAGTTGCAGCAGTGCAGAGGCAGGAACATTACGAATGGGACAGCCCTTCTGAGTGGACATATTCTTGAGCTCGAACGACTTCATGTCGGAATATCTGATAGTTCAAGTAATTAG

Protein sequence

MSRSMLLVFLFVILIITSQFEWKQQLVPEVDTRVNSQKQQQISTREEAVKEKILLSQERNIQRLNEVVRSLREQLQQCRGRNITNGTALLSGHILELERLHVGISDSSSN
Homology
[Close]
BLAST of Carg18418 vs. NCBI nr
Match: KAG7010338.1 (hypothetical protein SDJN02_27131, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 199.5 bits (506), Expect = 1.5e-47
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MSRSMLLVFLFVILIITSQFEWKQQLVPEVDTRVNSQKQQQISTREEAVKEKILLSQERN 60
           MSRSMLLVFLFVILIITSQFEWKQQLVPEVDTRVNSQKQQQISTREEAVKEKILLSQERN
Sbjct: 1   MSRSMLLVFLFVILIITSQFEWKQQLVPEVDTRVNSQKQQQISTREEAVKEKILLSQERN 60

Query: 61  IQRLNEVVRSLREQLQQCRGRNITNGTALLSGHILELERLHVGISDSSSN 111
           IQRLNEVVRSLREQLQQCRGRNITNGTALLSGHILELERLHVGISDSSSN
Sbjct: 61  IQRLNEVVRSLREQLQQCRGRNITNGTALLSGHILELERLHVGISDSSSN 110

[Close]
BLAST of Carg18418 vs. NCBI nr
Match: XP_022944563.1 (uncharacterized protein LOC111448980 [Cucurbita moschata] >XP_022985896.1 uncharacterized protein LOC111483810 [Cucurbita maxima])

HSP 1 Score: 185.3 bits (469), Expect = 2.9e-43
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 1   MSRSMLLVFLFVILIITSQFEWKQQLVPEVDTRVNSQKQQQISTREEAVKEKILLSQERN 60
           MSRSMLLVFLFVILIITSQFEWKQQLVPEVDTRVNSQKQQQISTREEAVKEKILLSQERN
Sbjct: 1   MSRSMLLVFLFVILIITSQFEWKQQLVPEVDTRVNSQKQQQISTREEAVKEKILLSQERN 60

Query: 61  IQRLNEVVRSLREQLQQCRGRNITNGTALLSGHILELERLHV 103
           IQRLNEVVRSLREQLQQCRGRNITNGTALLSGHILELERLHV
Sbjct: 61  IQRLNEVVRSLREQLQQCRGRNITNGTALLSGHILELERLHV 102

[Close]
BLAST of Carg18418 vs. NCBI nr
Match: XP_023512164.1 (uncharacterized protein LOC111776968 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 182.6 bits (462), Expect = 1.9e-42
Identity = 101/102 (99.02%), Postives = 101/102 (99.02%), Query Frame = 0 

Query: 1   MSRSMLLVFLFVILIITSQFEWKQQLVPEVDTRVNSQKQQQISTREEAVKEKILLSQERN 60
           MSRSMLLVFLFVILIITSQFEWKQQLVPEV TRVNSQKQQQISTREEAVKEKILLSQERN
Sbjct: 1   MSRSMLLVFLFVILIITSQFEWKQQLVPEVHTRVNSQKQQQISTREEAVKEKILLSQERN 60

Query: 61  IQRLNEVVRSLREQLQQCRGRNITNGTALLSGHILELERLHV 103
           IQRLNEVVRSLREQLQQCRGRNITNGTALLSGHILELERLHV
Sbjct: 61  IQRLNEVVRSLREQLQQCRGRNITNGTALLSGHILELERLHV 102

[Close]
BLAST of Carg18418 vs. NCBI nr
Match: XP_016900731.1 (PREDICTED: NAC domain-containing protein 40 [Cucumis melo] >KAA0061724.1 NAC domain-containing protein 40 [Cucumis melo var. makuwa])

HSP 1 Score: 174.9 bits (442), Expect = 3.9e-40
Identity = 98/103 (95.15%), Postives = 101/103 (98.06%), Query Frame = 0 

Query: 1   MSRSMLLVFLFVILIITSQFEWKQQLVPEVDTRVNSQK-QQQISTREEAVKEKILLSQER 60
           MSRSMLLVFLFVILIITSQFEW+QQLVPEVDT VNSQK QQQISTREEAVKEKILLSQER
Sbjct: 335 MSRSMLLVFLFVILIITSQFEWRQQLVPEVDTTVNSQKQQQQISTREEAVKEKILLSQER 394

Query: 61  NIQRLNEVVRSLREQLQQCRGRNITNGTALLSGHILELERLHV 103
           NIQRLNEVVRSLR+QLQQCRGRNITNGTALL+GHILELERLHV
Sbjct: 395 NIQRLNEVVRSLRQQLQQCRGRNITNGTALLTGHILELERLHV 437

[Close]
BLAST of Carg18418 vs. NCBI nr
Match: XP_038902642.1 (uncharacterized protein LOC120089290 [Benincasa hispida])

HSP 1 Score: 173.7 bits (439), Expect = 8.7e-40
Identity = 98/104 (94.23%), Postives = 100/104 (96.15%), Query Frame = 0 

Query: 1   MSRSMLLVFLFVILIITSQFEWKQQLVPEVDTRVNSQKQQQISTREEAVKEKILLSQERN 60
           MSRSMLLVFLFVILIITSQFEW+QQLVPEVD  +NSQKQQQISTREEAVKEKILLSQERN
Sbjct: 2   MSRSMLLVFLFVILIITSQFEWRQQLVPEVDNTLNSQKQQQISTREEAVKEKILLSQERN 61

Query: 61  IQRLNEVVRSLREQLQQCRGRNITNGTALLS--GHILELERLHV 103
           IQRLNEVVRSLREQLQQCRGRNITNGTALLS  GHILELERLHV
Sbjct: 62  IQRLNEVVRSLREQLQQCRGRNITNGTALLSGQGHILELERLHV 105

[Close]
BLAST of Carg18418 vs. ExPASy TrEMBL
Match: A0A6J1J9H8 (uncharacterized protein LOC111483810 OS=Cucurbita maxima OX=3661 GN=LOC111483810 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.4e-43
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 1   MSRSMLLVFLFVILIITSQFEWKQQLVPEVDTRVNSQKQQQISTREEAVKEKILLSQERN 60
           MSRSMLLVFLFVILIITSQFEWKQQLVPEVDTRVNSQKQQQISTREEAVKEKILLSQERN
Sbjct: 1   MSRSMLLVFLFVILIITSQFEWKQQLVPEVDTRVNSQKQQQISTREEAVKEKILLSQERN 60

Query: 61  IQRLNEVVRSLREQLQQCRGRNITNGTALLSGHILELERLHV 103
           IQRLNEVVRSLREQLQQCRGRNITNGTALLSGHILELERLHV
Sbjct: 61  IQRLNEVVRSLREQLQQCRGRNITNGTALLSGHILELERLHV 102

[Close]
BLAST of Carg18418 vs. ExPASy TrEMBL
Match: A0A6J1FY60 (uncharacterized protein LOC111448980 OS=Cucurbita moschata OX=3662 GN=LOC111448980 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.4e-43
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 1   MSRSMLLVFLFVILIITSQFEWKQQLVPEVDTRVNSQKQQQISTREEAVKEKILLSQERN 60
           MSRSMLLVFLFVILIITSQFEWKQQLVPEVDTRVNSQKQQQISTREEAVKEKILLSQERN
Sbjct: 1   MSRSMLLVFLFVILIITSQFEWKQQLVPEVDTRVNSQKQQQISTREEAVKEKILLSQERN 60

Query: 61  IQRLNEVVRSLREQLQQCRGRNITNGTALLSGHILELERLHV 103
           IQRLNEVVRSLREQLQQCRGRNITNGTALLSGHILELERLHV
Sbjct: 61  IQRLNEVVRSLREQLQQCRGRNITNGTALLSGHILELERLHV 102

[Close]
BLAST of Carg18418 vs. ExPASy TrEMBL
Match: A0A5A7V382 (NAC domain-containing protein 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold212G00990 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.9e-40
Identity = 98/103 (95.15%), Postives = 101/103 (98.06%), Query Frame = 0 

Query: 1   MSRSMLLVFLFVILIITSQFEWKQQLVPEVDTRVNSQK-QQQISTREEAVKEKILLSQER 60
           MSRSMLLVFLFVILIITSQFEW+QQLVPEVDT VNSQK QQQISTREEAVKEKILLSQER
Sbjct: 335 MSRSMLLVFLFVILIITSQFEWRQQLVPEVDTTVNSQKQQQQISTREEAVKEKILLSQER 394

Query: 61  NIQRLNEVVRSLREQLQQCRGRNITNGTALLSGHILELERLHV 103
           NIQRLNEVVRSLR+QLQQCRGRNITNGTALL+GHILELERLHV
Sbjct: 395 NIQRLNEVVRSLRQQLQQCRGRNITNGTALLTGHILELERLHV 437

[Close]
BLAST of Carg18418 vs. ExPASy TrEMBL
Match: A0A1S4DXM3 (NAC domain-containing protein 40 OS=Cucumis melo OX=3656 GN=LOC103491667 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.9e-40
Identity = 98/103 (95.15%), Postives = 101/103 (98.06%), Query Frame = 0 

Query: 1   MSRSMLLVFLFVILIITSQFEWKQQLVPEVDTRVNSQK-QQQISTREEAVKEKILLSQER 60
           MSRSMLLVFLFVILIITSQFEW+QQLVPEVDT VNSQK QQQISTREEAVKEKILLSQER
Sbjct: 335 MSRSMLLVFLFVILIITSQFEWRQQLVPEVDTTVNSQKQQQQISTREEAVKEKILLSQER 394

Query: 61  NIQRLNEVVRSLREQLQQCRGRNITNGTALLSGHILELERLHV 103
           NIQRLNEVVRSLR+QLQQCRGRNITNGTALL+GHILELERLHV
Sbjct: 395 NIQRLNEVVRSLRQQLQQCRGRNITNGTALLTGHILELERLHV 437

[Close]
BLAST of Carg18418 vs. ExPASy TrEMBL
Match: A0A0A0KEF2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G425770 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.2e-39
Identity = 97/103 (94.17%), Postives = 100/103 (97.09%), Query Frame = 0 

Query: 1   MSRSMLLVFLFVILIITSQFEWKQQLVPEVDTRVNSQK-QQQISTREEAVKEKILLSQER 60
           MSRSMLLVFLFVILIITSQFEW+QQLVPEVD+ VNSQK QQQISTREEAVKEKILLSQER
Sbjct: 2   MSRSMLLVFLFVILIITSQFEWRQQLVPEVDSTVNSQKQQQQISTREEAVKEKILLSQER 61

Query: 61  NIQRLNEVVRSLREQLQQCRGRNITNGTALLSGHILELERLHV 103
           NIQRLNEVVRSLR+QLQQCRGRNITNGTALLS HILELERLHV
Sbjct: 62  NIQRLNEVVRSLRQQLQQCRGRNITNGTALLSAHILELERLHV 104

[Close]
BLAST of Carg18418 vs. TAIR 10
Match: AT5G22280.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44280.1); Has 82 Blast hits to 82 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 101.3 bits (251), Expect = 5.1e-22
Identity = 63/106 (59.43%), Postives = 82/106 (77.36%), Query Frame = 0 

Query: 1   MSRSMLLVFLFVILIITSQFEWKQQLVPEVDTRVN-SQKQQQISTREEAVKEKILLSQER 60
           MSR ++LVFL VILI+TSQFEW+Q L+ E+D   + SQK QQI+ REEAVKEKI+LSQER
Sbjct: 1   MSRPIMLVFLLVILIVTSQFEWRQPLL-ELDAAPSLSQKHQQIAKREEAVKEKIILSQER 60

Query: 61  NIQRLNEVVRSLREQLQQCRGRNITNG---TALLSGHILELERLHV 103
           +IQRLN++VRSL+ QLQ+C+G N T     T+  +   +ELER H+
Sbjct: 61  HIQRLNDLVRSLQMQLQRCKGENETRNATETSHNNKQFIELERKHI 105

[Close]
BLAST of Carg18418 vs. TAIR 10
Match: AT3G44280.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22280.1); Has 82 Blast hits to 82 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-21
Identity = 67/107 (62.62%), Postives = 82/107 (76.64%), Query Frame = 0 

Query: 1   MSRSMLLVFLFVILIITSQFEWKQQLVPEVDTRV-NSQKQQQISTREEAVKEKILLSQER 60
           MS+ +LLV L VILI+TSQFEW+Q LV E+DT   +SQKQQQIS REEAVKEKI++SQER
Sbjct: 1   MSKPVLLVCLLVILIVTSQFEWRQPLV-ELDTATSSSQKQQQISDREEAVKEKIIISQER 60

Query: 61  NIQRLNEVVRSLREQLQQCRGRNITNGTALLSGHI----LELERLHV 103
           +IQRLNE+VRSL+ QL QC+G N T   A  S HI    +E+ER  +
Sbjct: 61  HIQRLNELVRSLQLQLLQCKGENETQ-NATKSYHINKQFIEVERKQI 105

[Close]
BLAST of Carg18418 vs. TAIR 10
Match: AT5G22280.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44280.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 80.5 bits (197), Expect = 9.4e-16
Identity = 51/96 (53.12%), Postives = 68/96 (70.83%), Query Frame = 0 

Query: 11  FVILIITSQFEWKQQLVPEVDTRVN-SQKQQQISTREEAVKEKILLSQERNIQRLNEVVR 70
           F   +I   FEW+Q L+ E+D   + SQK QQI+ REEAVKEKI+LSQER+IQRLN++VR
Sbjct: 3   FDFTVINRSFEWRQPLL-ELDAAPSLSQKHQQIAKREEAVKEKIILSQERHIQRLNDLVR 62

Query: 71  SLREQLQQCRGRNITNG---TALLSGHILELERLHV 103
           SL+ QLQ+C+G N T     T+  +   +ELER H+
Sbjct: 63  SLQMQLQRCKGENETRNATETSHNNKQFIELERKHI 97

[Close]
BLAST of Carg18418 vs. TAIR 10
Match: AT5G06265.1 (hyaluronan mediated motility receptor-related )

HSP 1 Score: 65.5 bits (158), Expect = 3.1e-11
Identity = 40/94 (42.55%), Postives = 62/94 (65.96%), Query Frame = 0 

Query: 1  MSRSMLLVFLFVILIITSQFEWKQQLVPEVDTR-----VNSQKQQQISTREEAVKEKILL 60
          M+RS +L+F+ + +++TSQFEW +Q+  E +T      ++ ++QQ I   +E+V+ K +L
Sbjct: 1  MTRSWVLLFVLMFIVLTSQFEWNEQVENESETSSRPLILSDKEQQHIPQGKESVQVKKIL 60

Query: 61 SQERNIQRLNEVVRSLREQLQQCRGRNITNGTAL 90
           QE+ IQ+LNE+VR LR QL QCR  N    T L
Sbjct: 61 FQEKKIQKLNELVRDLRRQLLQCRNENQVELTEL 94

[Close]
BLAST of Carg18418 vs. TAIR 10
Match: AT5G06265.2 (hyaluronan mediated motility receptor-related )

HSP 1 Score: 65.5 bits (158), Expect = 3.1e-11
Identity = 40/94 (42.55%), Postives = 62/94 (65.96%), Query Frame = 0 

Query: 1  MSRSMLLVFLFVILIITSQFEWKQQLVPEVDTR-----VNSQKQQQISTREEAVKEKILL 60
          M+RS +L+F+ + +++TSQFEW +Q+  E +T      ++ ++QQ I   +E+V+ K +L
Sbjct: 1  MTRSWVLLFVLMFIVLTSQFEWNEQVENESETSSRPLILSDKEQQHIPQGKESVQVKKIL 60

Query: 61 SQERNIQRLNEVVRSLREQLQQCRGRNITNGTAL 90
           QE+ IQ+LNE+VR LR QL QCR  N    T L
Sbjct: 61 FQEKKIQKLNELVRDLRRQLLQCRNENQVELTEL 94

The following BLAST results are available for this feature:
BLAST of Carg18418 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7010338.11.5e-47100.00hypothetical protein SDJN02_27131, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022944563.12.9e-43100.00uncharacterized protein LOC111448980 [Cucurbita moschata] >XP_022985896.1 unchar... [more]
XP_023512164.11.9e-4299.02uncharacterized protein LOC111776968 [Cucurbita pepo subsp. pepo][more]
XP_016900731.13.9e-4095.15PREDICTED: NAC domain-containing protein 40 [Cucumis melo] >KAA0061724.1 NAC dom... [more]
XP_038902642.18.7e-4094.23uncharacterized protein LOC120089290 [Benincasa hispida][more]
BLAST of Carg18418 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg18418 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1J9H81.4e-43100.00uncharacterized protein LOC111483810 OS=Cucurbita maxima OX=3661 GN=LOC111483810... [more]
A0A6J1FY601.4e-43100.00uncharacterized protein LOC111448980 OS=Cucurbita moschata OX=3662 GN=LOC1114489... [more]
A0A5A7V3821.9e-4095.15NAC domain-containing protein 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... [more]
A0A1S4DXM31.9e-4095.15NAC domain-containing protein 40 OS=Cucumis melo OX=3656 GN=LOC103491667 PE=4 SV... [more]
A0A0A0KEF21.2e-3994.17Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G425770 PE=4 SV=1[more]
BLAST of Carg18418 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G22280.15.1e-2259.43unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G44280.11.1e-2162.62unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G22280.29.4e-1653.13unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G06265.13.1e-1142.55hyaluronan mediated motility receptor-related [more]
AT5G06265.23.1e-1142.55hyaluronan mediated motility receptor-related [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 54..81
NoneNo IPR availablePANTHERPTHR34564PEPTIDYL-PROLYL CIS-TRANS ISOMERASE Gcoord: 1..102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18418-RACarg18418-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003677 DNA binding
molecular_function GO:0016853 isomerase activity