Carg18414 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg18414
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr20: 741818 .. 742054 (+)
RNA-Seq ExpressionCarg18414
SyntenyCarg18414
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAACAAACCCGCGAAGCAATCAGGAGGAAGGGATGAAATGTTGAAGATAGTGCCTCCTTTGGACCAAGCATATATTAGGTGGCTCGCACGGGATCTCGAGAGGATTCATGGCTTCACCCCAAGAAACCCTCGTGCCGTGAAGCCTCCCGATCACTACATAGAGTTCATGCGCTTGAATGGATGGTTGGACGTGAGTTTAGACGATCCTGATCTTGCACGGTTACTCAAATAG

mRNA sequence

ATGGGAAACAAACCCGCGAAGCAATCAGGAGGAAGGGATGAAATGTTGAAGATAGTGCCTCCTTTGGACCAAGCATATATTAGGTGGCTCGCACGGGATCTCGAGAGGATTCATGGCTTCACCCCAAGAAACCCTCGTGCCGTGAAGCCTCCCGATCACTACATAGAGTTCATGCGCTTGAATGGATGGTTGGACGTGAGTTTAGACGATCCTGATCTTGCACGGTTACTCAAATAG

Coding sequence (CDS)

ATGGGAAACAAACCCGCGAAGCAATCAGGAGGAAGGGATGAAATGTTGAAGATAGTGCCTCCTTTGGACCAAGCATATATTAGGTGGCTCGCACGGGATCTCGAGAGGATTCATGGCTTCACCCCAAGAAACCCTCGTGCCGTGAAGCCTCCCGATCACTACATAGAGTTCATGCGCTTGAATGGATGGTTGGACGTGAGTTTAGACGATCCTGATCTTGCACGGTTACTCAAATAG

Protein sequence

MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRLNGWLDVSLDDPDLARLLK
Homology
[Close]
BLAST of Carg18414 vs. NCBI nr
Match: XP_022943341.1 (uncharacterized protein LOC111448136 [Cucurbita moschata] >XP_022943342.1 uncharacterized protein LOC111448136 [Cucurbita moschata] >XP_023511908.1 uncharacterized protein LOC111776780 [Cucurbita pepo subsp. pepo] >XP_023511909.1 uncharacterized protein LOC111776780 [Cucurbita pepo subsp. pepo] >KAG7010334.1 hypothetical protein SDJN02_27127, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 171.0 bits (432), Expect = 4.0e-39
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL 60
          MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL
Sbjct: 1  MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL 60

Query: 61 NGWLDVSLDDPDLARLLK 79
          NGWLDVSLDDPDLARLLK
Sbjct: 61 NGWLDVSLDDPDLARLLK 78

[Close]
BLAST of Carg18414 vs. NCBI nr
Match: XP_022986677.1 (uncharacterized protein LOC111484357 [Cucurbita maxima] >XP_022986678.1 uncharacterized protein LOC111484357 [Cucurbita maxima])

HSP 1 Score: 169.9 bits (429), Expect = 8.9e-39
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL 60
          MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARD+ERIHGFTPRNPRAVKPPDHYIEFMRL
Sbjct: 1  MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDVERIHGFTPRNPRAVKPPDHYIEFMRL 60

Query: 61 NGWLDVSLDDPDLARLLK 79
          NGWLDVSLDDPDLARLLK
Sbjct: 61 NGWLDVSLDDPDLARLLK 78

[Close]
BLAST of Carg18414 vs. NCBI nr
Match: KAG6570469.1 (hypothetical protein SDJN03_29384, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 166.0 bits (419), Expect = 1.3e-37
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL 60
          MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL
Sbjct: 1  MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL 60

Query: 61 NGWLDVSLDDPDLAR 76
          NGWLDVSLDDPDLAR
Sbjct: 61 NGWLDVSLDDPDLAR 75

[Close]
BLAST of Carg18414 vs. NCBI nr
Match: XP_021278844.1 (uncharacterized protein LOC110412594 [Herrania umbratica] >EOY33333.1 Uncharacterized protein TCM_041290 isoform 1 [Theobroma cacao] >EOY33334.1 Uncharacterized protein TCM_041290 isoform 1 [Theobroma cacao])

HSP 1 Score: 146.7 bits (369), Expect = 8.1e-32
Identity = 64/78 (82.05%), Postives = 69/78 (88.46%), Query Frame = 0 

Query: 1  MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL 60
          MGNKP KQ    + +LKIVPPLDQAY+RWLARD+ERIHGFTPRNPRAVKPPDHYIE+MRL
Sbjct: 1  MGNKPVKQEQREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEYMRL 60

Query: 61 NGWLDVSLDDPDLARLLK 79
          NGWLDV LDDPDLA L K
Sbjct: 61 NGWLDVDLDDPDLAHLFK 78

[Close]
BLAST of Carg18414 vs. NCBI nr
Match: KAA0061729.1 (uncharacterized protein E6C27_scaffold212G001040 [Cucumis melo var. makuwa])

HSP 1 Score: 146.4 bits (368), Expect = 1.1e-31
Identity = 67/78 (85.90%), Postives = 70/78 (89.74%), Query Frame = 0 

Query: 1  MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL 60
          MGN+P KQ    +  LKIVPPLDQ Y+RWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL
Sbjct: 1  MGNRPVKQP-QEEVFLKIVPPLDQTYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL 60

Query: 61 NGWLDVSLDDPDLARLLK 79
          NGWLDVSLDDPDLARLLK
Sbjct: 61 NGWLDVSLDDPDLARLLK 77

[Close]
BLAST of Carg18414 vs. ExPASy TrEMBL
Match: A0A6J1FRG2 (uncharacterized protein LOC111448136 OS=Cucurbita moschata OX=3662 GN=LOC111448136 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.9e-39
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL 60
          MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL
Sbjct: 1  MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL 60

Query: 61 NGWLDVSLDDPDLARLLK 79
          NGWLDVSLDDPDLARLLK
Sbjct: 61 NGWLDVSLDDPDLARLLK 78

[Close]
BLAST of Carg18414 vs. ExPASy TrEMBL
Match: A0A6J1JH88 (uncharacterized protein LOC111484357 OS=Cucurbita maxima OX=3661 GN=LOC111484357 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 4.3e-39
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL 60
          MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARD+ERIHGFTPRNPRAVKPPDHYIEFMRL
Sbjct: 1  MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDVERIHGFTPRNPRAVKPPDHYIEFMRL 60

Query: 61 NGWLDVSLDDPDLARLLK 79
          NGWLDVSLDDPDLARLLK
Sbjct: 61 NGWLDVSLDDPDLARLLK 78

[Close]
BLAST of Carg18414 vs. ExPASy TrEMBL
Match: A0A061GZN3 (Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_041290 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.9e-32
Identity = 64/78 (82.05%), Postives = 69/78 (88.46%), Query Frame = 0 

Query: 1  MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL 60
          MGNKP KQ    + +LKIVPPLDQAY+RWLARD+ERIHGFTPRNPRAVKPPDHYIE+MRL
Sbjct: 1  MGNKPVKQEQREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEYMRL 60

Query: 61 NGWLDVSLDDPDLARLLK 79
          NGWLDV LDDPDLA L K
Sbjct: 61 NGWLDVDLDDPDLAHLFK 78

[Close]
BLAST of Carg18414 vs. ExPASy TrEMBL
Match: A0A6J0ZWT3 (uncharacterized protein LOC110412594 OS=Herrania umbratica OX=108875 GN=LOC110412594 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.9e-32
Identity = 64/78 (82.05%), Postives = 69/78 (88.46%), Query Frame = 0 

Query: 1  MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL 60
          MGNKP KQ    + +LKIVPPLDQAY+RWLARD+ERIHGFTPRNPRAVKPPDHYIE+MRL
Sbjct: 1  MGNKPVKQEQREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEYMRL 60

Query: 61 NGWLDVSLDDPDLARLLK 79
          NGWLDV LDDPDLA L K
Sbjct: 61 NGWLDVDLDDPDLAHLFK 78

[Close]
BLAST of Carg18414 vs. ExPASy TrEMBL
Match: A0A5A7V7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold212G001040 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 5.1e-32
Identity = 67/78 (85.90%), Postives = 70/78 (89.74%), Query Frame = 0 

Query: 1  MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL 60
          MGN+P KQ    +  LKIVPPLDQ Y+RWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL
Sbjct: 1  MGNRPVKQP-QEEVFLKIVPPLDQTYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL 60

Query: 61 NGWLDVSLDDPDLARLLK 79
          NGWLDVSLDDPDLARLLK
Sbjct: 61 NGWLDVSLDDPDLARLLK 77

[Close]
BLAST of Carg18414 vs. TAIR 10
Match: AT5G22210.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 111.3 bits (277), Expect = 3.5e-25
Identity = 53/80 (66.25%), Postives = 62/80 (77.50%), Query Frame = 0 

Query: 1  MGNKPAKQSGGRDEM-LKIVPPLDQAYIRWLARDLERIHGFTPR-NPRAVKPPDHYIEFM 60
          MGNK       R+E+ LKIVPPLD+ ++RWLARDL+R+HGF P+ N RA+ PPD YIEFM
Sbjct: 1  MGNKATTVKEEREEIHLKIVPPLDKVFLRWLARDLQRVHGFKPKNNTRAITPPDSYIEFM 60

Query: 61 RLNGWLDVSLDDPDLARLLK 79
          RLNG LDV LDDPDLA L K
Sbjct: 61 RLNGSLDVDLDDPDLAHLFK 80

[Close]
BLAST of Carg18414 vs. TAIR 10
Match: AT5G22210.2 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 111.3 bits (277), Expect = 3.5e-25
Identity = 53/80 (66.25%), Postives = 62/80 (77.50%), Query Frame = 0 

Query: 1  MGNKPAKQSGGRDEM-LKIVPPLDQAYIRWLARDLERIHGFTPR-NPRAVKPPDHYIEFM 60
          MGNK       R+E+ LKIVPPLD+ ++RWLARDL+R+HGF P+ N RA+ PPD YIEFM
Sbjct: 1  MGNKATTVKEEREEIHLKIVPPLDKVFLRWLARDLQRVHGFKPKNNTRAITPPDSYIEFM 60

Query: 61 RLNGWLDVSLDDPDLARLLK 79
          RLNG LDV LDDPDLA L K
Sbjct: 61 RLNGSLDVDLDDPDLAHLFK 80

The following BLAST results are available for this feature:
BLAST of Carg18414 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022943341.14.0e-39100.00uncharacterized protein LOC111448136 [Cucurbita moschata] >XP_022943342.1 unchar... [more]
XP_022986677.18.9e-3998.72uncharacterized protein LOC111484357 [Cucurbita maxima] >XP_022986678.1 uncharac... [more]
KAG6570469.11.3e-37100.00hypothetical protein SDJN03_29384, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_021278844.18.1e-3282.05uncharacterized protein LOC110412594 [Herrania umbratica] >EOY33333.1 Uncharacte... [more]
KAA0061729.11.1e-3185.90uncharacterized protein E6C27_scaffold212G001040 [Cucumis melo var. makuwa][more]
BLAST of Carg18414 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg18414 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FRG21.9e-39100.00uncharacterized protein LOC111448136 OS=Cucurbita moschata OX=3662 GN=LOC1114481... [more]
A0A6J1JH884.3e-3998.72uncharacterized protein LOC111484357 OS=Cucurbita maxima OX=3661 GN=LOC111484357... [more]
A0A061GZN33.9e-3282.05Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_041290 PE=4 ... [more]
A0A6J0ZWT33.9e-3282.05uncharacterized protein LOC110412594 OS=Herrania umbratica OX=108875 GN=LOC11041... [more]
A0A5A7V7T45.1e-3285.90Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of Carg18414 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G22210.13.5e-2566.25unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin... [more]
AT5G22210.23.5e-2566.25unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18414-RACarg18414-RAmRNA