Carg18361 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18361
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	60S acidic ribosomal protein P0
Location	Carg_Chr04: 849571 .. 851491 (+)
RNA-Seq Expression	Carg18361
Synteny	Carg18361

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTGAATCTAATGGGCTTGGGCCGATTCGCCATTCTGCTATTCTTGATGGGCCTATCTTATTGGGCTCTTAAAGCGTATGGCCCATATTGGACATTGACCATATAAAACCGAACCAGCCTCCATTGTCATCTTCCACCAGTCTGTTAAGCTCCCCAGGAGTTGTCCAAAACCCTAAATTAACTGAGGTTAAAGAGACGGCATAGCTTCGCTGTCCGCCTTGACAGAGCCCTCGGCTTCGTCTTGGCCCTCGGTTTTGCTTTGTTCTTTATTCCATTAACCTTTTTTGTTTTACAGTCAGGTCTTGATTGTGGCTGCTGACAATGTCGGATCAAACCAGCTCCAGAACATTAGGAAGGGTCTCCGTGGTAACTCTATTGTGCTCATGGGAAAAAACACCATGATGAAGCGTTCTGTGAGGATTCACTCTGAGAAGACTGGAAACAAGGCTTACCTCAGTCTTCTTCCCCTTCTTGTGGTAAGTAAAATTTTGGGTTTTGTATTTTGATTCGAATTTCCATTTTTCTGTTGTCATATTGAAGTGTTTGACATGGCACGTTGGTAATTGATTGTATTAGGGAAATGTTGGGTTGATCTTCACAAAGGGTGATTTGAAGGAAGTCACTGAAGAGGTGGCCAAATACAAGGTGTGTAGACTACTACTTGCTGTTCTTTTCGGTGTTTACATTGGATAGATACTCTGTTAGTGTTCCATATAGATACTACCAAAATGGGATAACCACATTAAGTTTGAAATTTTAAGCGGCATTTTCTTTACGCTGAATGATTGATTATTATTGTGAATCTTTCACATCATGTATTTATTCAATCATTTTGTTTTTGTTAATTTGCTTCAAATTCAACACATTCTATCCTTGAAGTTACTGTTTTGTTTTTGTATTGTCGCAGATTATTAGATTGTTATTGTAGAATATGTCATCGTTAATGGTTTTGAAAAATCTGTCTCGTCACTTAAGTGTTTGGGCGGGCATTGATTTGATTGAGATCATGTACGATCCATTCTCTTCTATTTGCAGTTTTGTAATTTTTTCAAAATTTTCCATGAATTAGATGTTTAGTCTGTTGTGATATATCATTGAGGCTTAAGTGTTTTCCCATGCGTATGCTTTGTAAATTATGTAGGTTGGAGCCCCTGCTCGTGTTGGTTTGGTTGCTCCCATTGATGTCATTATTCCACCAGGCAACACAGGCCTTGATCCATCACAGACCTCCTTCTTCCAGGTTTGTAAATTTGATTACAAAGTAACCCACCAGTTTCCATGAATGATGTCTGAGTTTTTCTAATTCTTCTTCATACAGGTTCCAGGTTCTTAACATTCCTACCAAGATTAACAAGGGTACTGTTGAAATTATCACTCCCGTGGAGCTTATTAAGAAGGGTGAGAAGGTTGGATCGTCTGAGGCTGCTCTCCTTGCCAAGCTAGGAATTAGGCCATTCTCATATGGTCTGGTCGTTCTATCTGCTTATGACAATGGTTTAGTATTCAGCCCTGAGGTGCTTGATCTGACCGAGGACGATCTCCTCGAGAAGTTTGCCTTGGGTGTTTCCATGGTTACATCATTGTCATTGGCCGTTTCATACAAAAATCTTCTTGCTGTTGCAGTTGCCACCGACTACTCGTTCCCACAAGCCGAGAAAGTTAAGGAGTATCTCGAGGTACTATGTCACATCTTTACAAAGTTCTTGCCTTTCTTTGAATCTATCTTGTTTGCTTTAGCTGATACCTAGTTGTTGCTGTGATGTTTCTGTGCAGGATCCAAGCAAGTTTGCGGCGGCTGTGTCCGTTTCTGCTGTTGCTGATTCTATCTCTGCTACGGCAGCTGCTGCAGCAGAAGAGAAGAAGGAAGAGCCAGCAGAAGAGTCTGATGATGACATTGGTTTCAGCTTGTTCGATTAA

mRNA sequence

ATGGGTCAGGTCTTGATTGTGGCTGCTGACAATGTCGGATCAAACCAGCTCCAGAACATTAGGAAGGGTCTCCGTGGTAACTCTATTGTGCTCATGGGAAAAAACACCATGATGAAGCGTTCTGTGAGGATTCACTCTGAGAAGACTGGAAACAAGGCTTACCTCAGTCTTCTTCCCCTTCTTGTGGGAAATGTTGGGTTGATCTTCACAAAGGGTGATTTGAAGGAAGTCACTGAAGAGGTGGCCAAATACAAGGTTGGAGCCCCTGCTCGTGTTGGTTTGGTTGCTCCCATTGATGTCATTATTCCACCAGGCAACACAGGCCTTGATCCATCACAGACCTCCTTCTTCCAGGTTCTTAACATTCCTACCAAGATTAACAAGGGTACTGTTGAAATTATCACTCCCGTGGAGCTTATTAAGAAGGGTGAGAAGGTTGGATCGTCTGAGGCTGCTCTCCTTGCCAAGCTAGGAATTAGGCCATTCTCATATGGTCTGGTCGTTCTATCTGCTTATGACAATGGTTTAGTATTCAGCCCTGAGGTGCTTGATCTGACCGAGGACGATCTCCTCGAGAAGTTTGCCTTGGGTGTTTCCATGGTTACATCATTGTCATTGGCCGTTTCATACAAAAATCTTCTTGCTGTTGCAGTTGCCACCGACTACTCGTTCCCACAAGCCGAGAAAGTTAAGGAGTATCTCGAGGATCCAAGCAAGTTTGCGGCGGCTGTGTCCGTTTCTGCTGTTGCTGATTCTATCTCTGCTACGGCAGCTGCTGCAGCAGAAGAGAAGAAGGAAGAGCCAGCAGAAGAGTCTGATGATGACATTGGTTTCAGCTTGTTCGATTAA

Coding sequence (CDS)

ATGGGTCAGGTCTTGATTGTGGCTGCTGACAATGTCGGATCAAACCAGCTCCAGAACATTAGGAAGGGTCTCCGTGGTAACTCTATTGTGCTCATGGGAAAAAACACCATGATGAAGCGTTCTGTGAGGATTCACTCTGAGAAGACTGGAAACAAGGCTTACCTCAGTCTTCTTCCCCTTCTTGTGGGAAATGTTGGGTTGATCTTCACAAAGGGTGATTTGAAGGAAGTCACTGAAGAGGTGGCCAAATACAAGGTTGGAGCCCCTGCTCGTGTTGGTTTGGTTGCTCCCATTGATGTCATTATTCCACCAGGCAACACAGGCCTTGATCCATCACAGACCTCCTTCTTCCAGGTTCTTAACATTCCTACCAAGATTAACAAGGGTACTGTTGAAATTATCACTCCCGTGGAGCTTATTAAGAAGGGTGAGAAGGTTGGATCGTCTGAGGCTGCTCTCCTTGCCAAGCTAGGAATTAGGCCATTCTCATATGGTCTGGTCGTTCTATCTGCTTATGACAATGGTTTAGTATTCAGCCCTGAGGTGCTTGATCTGACCGAGGACGATCTCCTCGAGAAGTTTGCCTTGGGTGTTTCCATGGTTACATCATTGTCATTGGCCGTTTCATACAAAAATCTTCTTGCTGTTGCAGTTGCCACCGACTACTCGTTCCCACAAGCCGAGAAAGTTAAGGAGTATCTCGAGGATCCAAGCAAGTTTGCGGCGGCTGTGTCCGTTTCTGCTGTTGCTGATTCTATCTCTGCTACGGCAGCTGCTGCAGCAGAAGAGAAGAAGGAAGAGCCAGCAGAAGAGTCTGATGATGACATTGGTTTCAGCTTGTTCGATTAA

Protein sequence

MGQVLIVAADNVGSNQLQNIRKGLRGNSIVLMGKNTMMKRSVRIHSEKTGNKAYLSLLPLLVGNVGLIFTKGDLKEVTEEVAKYKVGAPARVGLVAPIDVIIPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAYDNGLVFSPEVLDLTEDDLLEKFALGVSMVTSLSLAVSYKNLLAVAVATDYSFPQAEKVKEYLEDPSKFAAAVSVSAVADSISATAAAAAEEKKEEPAEESDDDIGFSLFD

Homology

[Close]

BLAST of Carg18361 vs. NCBI nr
Match: KAG7030679.1 (hypothetical protein SDJN02_04716, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 521.9 bits (1343), Expect = 3.3e-144
Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 0


Query: 1   MGQVLIVAADNVGSNQLQNIRKGLRGNSIVLMGKNTMMKRSVRIHSEKTGNKAYLSLLPL 60
           MGQVLIVAADNVGSNQLQNIRKGLRGNSIVLMGKNTMMKRSVRIHSEKTGNKAYLSLLPL
Sbjct: 1   MGQVLIVAADNVGSNQLQNIRKGLRGNSIVLMGKNTMMKRSVRIHSEKTGNKAYLSLLPL 60

Query: 61  LVGNVGLIFTKGDLKEVTEEVAKYKVGAPARVGLVAPIDVIIPPGNTGLDPSQTSFFQVL 120
           LVGNVGLIFTKGDLKEVTEEVAKYKVGAPARVGLVAPIDVIIPPGNTGLDPSQTSFFQVL
Sbjct: 61  LVGNVGLIFTKGDLKEVTEEVAKYKVGAPARVGLVAPIDVIIPPGNTGLDPSQTSFFQVL 120

Query: 121 NIPTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAYDNGLVFSP 180
           NIPTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAYDNGLVFSP
Sbjct: 121 NIPTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAYDNGLVFSP 180

Query: 181 EVLDLTEDDLLEKFALGVSMVTSLSLAVSYKNLLAVAVATDYSFPQAEKVKEYLEDPSKF 240
           EVLDLTEDDLLEKFALGVSMVTSLSLAVSYKNLLAVAVATDYSFPQAEKVKEYLEDPSKF
Sbjct: 181 EVLDLTEDDLLEKFALGVSMVTSLSLAVSYKNLLAVAVATDYSFPQAEKVKEYLEDPSKF 240

Query: 241 AAAVSVSAVADSISATAAAAAEEKKEEPAEESDDDIGFSLFD 283
           AAAVSVSAVADSISATAAAAAEEKKEEPAEESDDDIGFSLFD
Sbjct: 241 AAAVSVSAVADSISATAAAAAEEKKEEPAEESDDDIGFSLFD 282

[Close]

BLAST of Carg18361 vs. NCBI nr
Match: XP_022996175.1 (60S acidic ribosomal protein P0-like [Cucurbita maxima])

HSP 1 Score: 489.2 bits (1258), Expect = 2.4e-134
Identity = 271/295 (91.86%), Postives = 276/295 (93.56%), Query Frame = 0


Query: 3   QVLIVAADNVGSNQLQNIRKGLRGNSIVLMGKNTMMKRSVRIHSEKTGNKAYLSLLPLLV 62
           QVLIVAADNVGSNQLQNIRKGLRG+S VLMGKNTMMKRSVRIHSEKTGNKAYLSLLPLLV
Sbjct: 26  QVLIVAADNVGSNQLQNIRKGLRGDSTVLMGKNTMMKRSVRIHSEKTGNKAYLSLLPLLV 85

Query: 63  GNVGLIFTKGDLKEVTEEVAKYKVGAPARVGLVAPIDVIIPPGNTGLDPSQTSFFQVLNI 122
           GNVGLIFTKGDLKEV+EEVAKYKVGAPARVGLVAPIDVI+PPGNTGLDPSQTSFFQVLNI
Sbjct: 86  GNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVIVPPGNTGLDPSQTSFFQVLNI 145

Query: 123 PTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAYDNGLVFSPEV 182
           PTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAYDNG VFSPEV
Sbjct: 146 PTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAYDNGSVFSPEV 205

Query: 183 LDLTEDDLLEKFALGVSMVTSLSLAVS--------------YKNLLAVAVATDYSFPQAE 242
           LDLTEDDLLEKFALGVSMVTSLSLAVS              YKNLLAVAVATDYSFPQAE
Sbjct: 206 LDLTEDDLLEKFALGVSMVTSLSLAVSYPTLAAAPHMLINAYKNLLAVAVATDYSFPQAE 265

Query: 243 KVKEYLEDPSKFAAAVSVSAVADSISATAAAAA-EEKKEEPAEESDDDIGFSLFD 283
           KVKEYLEDPSKF AAV+VSAVADS SATAAAAA EEKKEEPAEESDDD+GFSLFD
Sbjct: 266 KVKEYLEDPSKFVAAVAVSAVADSSSATAAAAAVEEKKEEPAEESDDDMGFSLFD 320

[Close]

BLAST of Carg18361 vs. NCBI nr
Match: XP_022941971.1 (60S acidic ribosomal protein P0-like, partial [Cucurbita moschata])

HSP 1 Score: 483.4 bits (1243), Expect = 1.3e-132
Identity = 272/295 (92.20%), Postives = 276/295 (93.56%), Query Frame = 0


Query: 3   QVLIVAADNVGSNQLQNIRKGLRGNSIVLMGKNTMMKRSVRIHSEKTGNKAYLSLLPLLV 62
           QVLIVAADNVGSNQLQNI KGLRG+SIVLMGKNTMMKRSVRI+SEKTGNKAYLSLLP LV
Sbjct: 59  QVLIVAADNVGSNQLQNIWKGLRGDSIVLMGKNTMMKRSVRIYSEKTGNKAYLSLLP-LV 118

Query: 63  GNVGLIFTKGDLKEVTEEVAKYKVGAPARVGLVAPIDVIIPPGNTGLDPSQTSFFQVLNI 122
           GNVGLIFTKGDLKEV+EEVAKYKVGAPARVGLVAPIDVI+PPGNTGLDPSQTSFFQVLNI
Sbjct: 119 GNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVIVPPGNTGLDPSQTSFFQVLNI 178

Query: 123 PTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAYDNGLVFSPEV 182
           PTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAYDNG VFSPEV
Sbjct: 179 PTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAYDNGSVFSPEV 238

Query: 183 LDLTEDDLLEKFALGVSMVTSLSLAVS--------------YKNLLAVAVATDYSFPQAE 242
           LDLTEDDLLEKFALGVSMVTSLSLAVS              YKNLLAVAVATDYSFPQAE
Sbjct: 239 LDLTEDDLLEKFALGVSMVTSLSLAVSYPTLAAAPHMLINAYKNLLAVAVATDYSFPQAE 298

Query: 243 KVKEYLEDPSKFAAAVSVSAVADSISATAAAAA-EEKKEEPAEESDDDIGFSLFD 283
           KVKEYLEDPSKFAAAVSVSAVADS SATAAAAA EEKKEEPAEESDDDIGFSLFD
Sbjct: 299 KVKEYLEDPSKFAAAVSVSAVADSSSATAAAAAVEEKKEEPAEESDDDIGFSLFD 352

[Close]

BLAST of Carg18361 vs. NCBI nr
Match: XP_038892643.1 (60S acidic ribosomal protein P0 [Benincasa hispida])

HSP 1 Score: 478.8 bits (1231), Expect = 3.3e-131
Identity = 262/295 (88.81%), Postives = 274/295 (92.88%), Query Frame = 0


Query: 3   QVLIVAADNVGSNQLQNIRKGLRGNSIVLMGKNTMMKRSVRIHSEKTGNKAYLSLLPLLV 62
           QVL+VAADNVGSNQLQNIRKGLRG+S+VLMGKNTMMKRSVRIHSE+TGNKAYL+LLPLLV
Sbjct: 27  QVLVVAADNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSEQTGNKAYLNLLPLLV 86

Query: 63  GNVGLIFTKGDLKEVTEEVAKYKVGAPARVGLVAPIDVIIPPGNTGLDPSQTSFFQVLNI 122
           GNVGLIFTKGDLKEV+EEVAKYKVGAPARVGLVAPIDVI+PPGNTGLDPSQTSFFQVLNI
Sbjct: 87  GNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVIVPPGNTGLDPSQTSFFQVLNI 146

Query: 123 PTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAYDNGLVFSPEV 182
           PTKINKGTVEIITPVELIKKG+KVGSSEAALLAKLGIRPFSYGLVVLS YDNG VFSPEV
Sbjct: 147 PTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEV 206

Query: 183 LDLTEDDLLEKFALGVSMVTSLSLAVS--------------YKNLLAVAVATDYSFPQAE 242
           LDLTEDDLLEKFALGVSMVTSLSLA+S              YKNLLAVAVATDYSFPQAE
Sbjct: 207 LDLTEDDLLEKFALGVSMVTSLSLAISYPTLAAAPHMLINAYKNLLAVAVATDYSFPQAE 266

Query: 243 KVKEYLEDPSKFAAAVSVSAVADSISATAAAAA-EEKKEEPAEESDDDIGFSLFD 283
           KVKEYLEDPSKFA AV+VSA ADS +A AAAAA EEKKEEPAEESDDD+GFSLFD
Sbjct: 267 KVKEYLEDPSKFAVAVAVSAAADSGAAPAAAAAVEEKKEEPAEESDDDMGFSLFD 321

[Close]

BLAST of Carg18361 vs. NCBI nr
Match: XP_022987157.1 (60S acidic ribosomal protein P0 [Cucurbita maxima])

HSP 1 Score: 475.7 bits (1223), Expect = 2.8e-130
Identity = 259/294 (88.10%), Postives = 268/294 (91.16%), Query Frame = 0


Query: 3   QVLIVAADNVGSNQLQNIRKGLRGNSIVLMGKNTMMKRSVRIHSEKTGNKAYLSLLPLLV 62
           QVLIVAADNVGSNQLQNIRKGLRG+S+VLMGKNTMMKRSVRIH+E TGNKAYL+LLPLLV
Sbjct: 27  QVLIVAADNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHAENTGNKAYLNLLPLLV 86

Query: 63  GNVGLIFTKGDLKEVTEEVAKYKVGAPARVGLVAPIDVIIPPGNTGLDPSQTSFFQVLNI 122
           GNVGLIFTKGDLKEV+EEVAKYKVGAPARVGLVAPIDVI+PPGNTGLDPSQTSFFQVLNI
Sbjct: 87  GNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVIVPPGNTGLDPSQTSFFQVLNI 146

Query: 123 PTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAYDNGLVFSPEV 182
           PTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLS YDNG VFSPEV
Sbjct: 147 PTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEV 206

Query: 183 LDLTEDDLLEKFALGVSMVTSLSLAVS--------------YKNLLAVAVATDYSFPQAE 242
           LDLTEDDLLEKFALGVSMVTSLSLAVS              YKNLLAVAVATDYSFPQAE
Sbjct: 207 LDLTEDDLLEKFALGVSMVTSLSLAVSYPTLAAAPHMLINAYKNLLAVAVATDYSFPQAE 266

Query: 243 KVKEYLEDPSKFAAAVSVSAVADSISATAAAAAEEKKEEPAEESDDDIGFSLFD 283
           KVKEYLEDPSKFA AV+VSA     +  AAAA EEKKEEPAEESDDD+GFSLFD
Sbjct: 267 KVKEYLEDPSKFAVAVAVSAADSGAAPAAAAAVEEKKEEPAEESDDDMGFSLFD 320

[Close]

BLAST of Carg18361 vs. ExPASy Swiss-Prot
Match: P50346 (60S acidic ribosomal protein P0 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 448.7 bits (1153), Expect = 4.7e-125
Identity = 239/295 (81.02%), Postives = 262/295 (88.81%), Query Frame = 0


Query: 2   GQVLIVAADNVGSNQLQNIRKGLRGNSIVLMGKNTMMKRSVRIHSEKTGNKAYLSLLPLL 61
           GQ+L+V +DNVGSNQLQNIRKGLRG+S+VLMGKNTMMKRSVR+H+EKTGN AYL+L+PLL
Sbjct: 26  GQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRSVRMHAEKTGNNAYLNLIPLL 85

Query: 62  VGNVGLIFTKGDLKEVTEEVAKYKVGAPARVGLVAPIDVIIPPGNTGLDPSQTSFFQVLN 121
           VGNVGLIFTKGDLKEV+EEVAKYKVGAPARVGLVAPIDV++PPGNTGLDPSQTSFFQVLN
Sbjct: 86  VGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLN 145

Query: 122 IPTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAYDNGLVFSPE 181
           IPTKINKGTVEIITPVELI+KG+KVGSSEAALLAKLGIRPFSYGLVVLS YDNG VFSPE
Sbjct: 146 IPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPE 205

Query: 182 VLDLTEDDLLEKFALGVSMVTSLSLAVS--------------YKNLLAVAVATDYSFPQA 241
           VLDLTEDDL+ KFA GVSMVTSLSLA+S              YKN+LAVAV TDYSFP+A
Sbjct: 206 VLDLTEDDLIGKFAAGVSMVTSLSLAISYPTLAAAPHMFVNAYKNVLAVAVETDYSFPEA 265

Query: 242 EKVKEYLEDPSKFAAAVSVSAVADSISATAAAAAEEKKEEPAEESDDDIGFSLFD 283
           +KVKEYL+DPSKFA A   +  A S +  AAA  EEKKEEPAEESDDD+GFSLFD
Sbjct: 266 DKVKEYLKDPSKFAVAAVAAPAAASGAPAAAAKEEEKKEEPAEESDDDMGFSLFD 320

[Close]

BLAST of Carg18361 vs. ExPASy Swiss-Prot
Match: P50345 (60S acidic ribosomal protein P0 OS=Lupinus luteus OX=3873 PE=2 SV=1)

HSP 1 Score: 421.4 bits (1082), Expect = 8.1e-117
Identity = 229/295 (77.63%), Postives = 259/295 (87.80%), Query Frame = 0


Query: 3   QVLIVAADNVGSNQLQNIRKGLRGNSIVLMGKNTMMKRSVRIHSEKTGNKAYLSLLPLLV 62
           Q+L+V ADNVGS QLQNIR+GLRG+S+VLMGKNTMMKRSVRIH+EKTGN+A+L+L+PLL+
Sbjct: 27  QILVVNADNVGSKQLQNIRQGLRGDSVVLMGKNTMMKRSVRIHAEKTGNQAFLNLIPLLI 86

Query: 63  GNVGLIFTKGDLKEVTEEVAKYKVGAPARVGLVAPIDVIIPPGNTGLDPSQTSFFQVLNI 122
           GNVGLIFTKG LKEV+EEVAKYKVGAPA VGLVAPIDV++PPGNTGLDPSQTSFFQVLNI
Sbjct: 87  GNVGLIFTKGYLKEVSEEVAKYKVGAPACVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNI 146

Query: 123 PTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAYDNGLVFSPEV 182
           PTKINKGTVEIITPVELIKKG+KVGSSEAALLAKLGIRPFSYGLVVLS YDNG VF PEV
Sbjct: 147 PTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFKPEV 206

Query: 183 LDLTEDDLLEKFALGVS---------MVTSLSLAV-----SYKNLLAVAVATDYSFPQAE 242
           LDLTEDDLLEKFA+GVS          + + S A      +YKN+LAVAVAT+YSFPQA+
Sbjct: 207 LDLTEDDLLEKFAIGVSQCYFSDTSHFIPNPSAAPHVFINAYKNVLAVAVATEYSFPQAD 266

Query: 243 KVKEYLEDPSKFAAAVSVSA-VADSISATAAAAAEEKKEEPAEESDDDIGFSLFD 283
           +VKEYL+DPSKFAA  + +A  ADS +A AAAA  EK+EEPAEESDD++GF LFD
Sbjct: 267 EVKEYLKDPSKFAAVAAAAAPAADSGAAPAAAAKAEKEEEPAEESDDEMGFGLFD 321

[Close]

BLAST of Carg18361 vs. ExPASy Swiss-Prot
Match: O04204 (60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana OX=3702 GN=RPP0A PE=1 SV=1)

HSP 1 Score: 418.3 bits (1074), Expect = 6.8e-116
Identity = 226/293 (77.13%), Postives = 253/293 (86.35%), Query Frame = 0


Query: 3   QVLIVAADNVGSNQLQNIRKGLRGNSIVLMGKNTMMKRSVRIHSEKTGNKAYLSLLPLLV 62
           Q+L+VAADNVGS QLQNIRKGLRG+S+VLMGKNTMMKRSVRIH++KTGN+A+LSLLPLL 
Sbjct: 27  QILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHADKTGNQAFLSLLPLLQ 86

Query: 63  GNVGLIFTKGDLKEVTEEVAKYKVGAPARVGLVAPIDVIIPPGNTGLDPSQTSFFQVLNI 122
           GNVGLIFTKGDLKEV+EEVAKYKVGAPARVGLVAPIDV++ PGNTGLDPSQTSFFQVLNI
Sbjct: 87  GNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNI 146

Query: 123 PTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAYDNGLVFSPEV 182
           PTKINKGTVEIITPVELIKKG+KVGSSEAALLAKLGIRPFSYGLVV S YDNG VF+PEV
Sbjct: 147 PTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVESVYDNGSVFNPEV 206

Query: 183 LDLTEDDLLEKFALGVSMVTSLSLAVS--------------YKNLLAVAVATDYSFPQAE 242
           L+LTEDDL+EKFA GVSM+T+LSLA+S              YKN+LAVA+AT+YSFPQAE
Sbjct: 207 LNLTEDDLVEKFAAGVSMITALSLAISYPTVAAAPHMFLNAYKNVLAVALATEYSFPQAE 266

Query: 243 KVKEYLEDPSKFAAAVSVSAVADSISATAAAAAEEKKEEPAEESDDDIGFSLF 282
            VKE+L+DP+KFA AV+     +S  A  A A E   EE AEESD D+GF LF
Sbjct: 267 NVKEFLKDPTKFAVAVAAPVSGESGGAVVAVAVE---EEAAEESDGDMGFDLF 316

[Close]

BLAST of Carg18361 vs. ExPASy Swiss-Prot
Match: P57691 (60S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana OX=3702 GN=RPP0C PE=1 SV=1)

HSP 1 Score: 416.4 bits (1069), Expect = 2.6e-115
Identity = 232/297 (78.11%), Postives = 253/297 (85.19%), Query Frame = 0


Query: 3   QVLIVAADNVGSNQLQNIRKGLRGNSIVLMGKNTMMKRSVRIHSEKTGNKAYLSLLPLLV 62
           Q+L+VAADNVGS QLQNIRKGLRG+S+VLMGKNTMMKRSVRIHSE +GN A L+LLPLL 
Sbjct: 26  QILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENSGNTAILNLLPLLQ 85

Query: 63  GNVGLIFTKGDLKEVTEEVAKYKVGAPARVGLVAPIDVIIPPGNTGLDPSQTSFFQVLNI 122
           GNVGLIFTKGDLKEV+EEVAKYKVGAPARVGLVAPIDV++ PGNTGLDPSQTSFFQVLNI
Sbjct: 86  GNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNI 145

Query: 123 PTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAYDNGLVFSPEV 182
           PTKINKGTVEIITPVELIK+G+KVGSSEAALLAKLGIRPFSYGLVV S YDNG VFSPEV
Sbjct: 146 PTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEV 205

Query: 183 LDLTEDDLLEKFALGVSMVTSLSLAVS--------------YKNLLAVAVATDYSFPQAE 242
           LDLTED L+EKFA G+SMVTSL+LAVS              YKN LA+AVATDY+FPQAE
Sbjct: 206 LDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATDYTFPQAE 265

Query: 243 KVKEYLEDPSKF---AAAVSVSAVADSISATAAAAAEEKKEEPAEESDDDIGFSLFD 283
           KVKE+L+DPSKF   AAAVS  A   S  A AAA  EEKKEE ++E D + GF LFD
Sbjct: 266 KVKEFLKDPSKFVVAAAAVSADAGGGSAQAGAAAKVEEKKEE-SDEEDYEGGFGLFD 321

[Close]

BLAST of Carg18361 vs. ExPASy Swiss-Prot
Match: P41095 (60S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica OX=39947 GN=60SP0 PE=1 SV=3)

HSP 1 Score: 412.9 bits (1060), Expect = 2.9e-114
Identity = 218/294 (74.15%), Postives = 253/294 (86.05%), Query Frame = 0


Query: 3   QVLIVAADNVGSNQLQNIRKGLRGNSIVLMGKNTMMKRSVRIHSEKTGNKAYLSLLPLLV 62
           +VLI  ADNVGSNQLQ IRKGLRG+SIVLMGKNT+++R +++H++ TGNK +L L+PLLV
Sbjct: 27  KVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKEFLELMPLLV 86

Query: 63  GNVGLIFTKGDLKEVTEEVAKYKVGAPARVGLVAPIDVIIPPGNTGLDPSQTSFFQVLNI 122
           GNVGLIFTKGDLKEV EEVAKYKVGAPARVGLVAP+DV++PPGNTGLDPSQTSFFQVLNI
Sbjct: 87  GNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNI 146

Query: 123 PTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAYDNGLVFSPEV 182
           PTKINKGTVEIITPVELIKKG+KVGSSE+ALLAKLGIRPFSYGLV+ + YD+G VFSPEV
Sbjct: 147 PTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFSPEV 206

Query: 183 LDLTEDDLLEKFALGVSMVTSLSLAVS--------------YKNLLAVAVATDYSFPQAE 242
           LDLTEDDL+EKFA GVSMV S+SLA+S              YKN+LAVAV T+YS+P A+
Sbjct: 207 LDLTEDDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHAD 266

Query: 243 KVKEYLEDPSKFAAAVSVSAVADSISATAAAAAEEKKEEPAEESDDDIGFSLFD 283
           K+KEYL+DPSKFA A  V+A + + +A +AA  EEKKEEP EESD D+G SLFD
Sbjct: 267 KIKEYLKDPSKFAVAAPVAADSGA-AAPSAAKEEEKKEEPEEESDGDLGMSLFD 319

[Close]

BLAST of Carg18361 vs. ExPASy TrEMBL
Match: A0A6J1K610 (60S acidic ribosomal protein P0 OS=Cucurbita maxima OX=3661 GN=LOC111491481 PE=3 SV=1)

HSP 1 Score: 489.2 bits (1258), Expect = 1.2e-134
Identity = 271/295 (91.86%), Postives = 276/295 (93.56%), Query Frame = 0


Query: 3   QVLIVAADNVGSNQLQNIRKGLRGNSIVLMGKNTMMKRSVRIHSEKTGNKAYLSLLPLLV 62
           QVLIVAADNVGSNQLQNIRKGLRG+S VLMGKNTMMKRSVRIHSEKTGNKAYLSLLPLLV
Sbjct: 26  QVLIVAADNVGSNQLQNIRKGLRGDSTVLMGKNTMMKRSVRIHSEKTGNKAYLSLLPLLV 85

Query: 63  GNVGLIFTKGDLKEVTEEVAKYKVGAPARVGLVAPIDVIIPPGNTGLDPSQTSFFQVLNI 122
           GNVGLIFTKGDLKEV+EEVAKYKVGAPARVGLVAPIDVI+PPGNTGLDPSQTSFFQVLNI
Sbjct: 86  GNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVIVPPGNTGLDPSQTSFFQVLNI 145

Query: 123 PTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAYDNGLVFSPEV 182
           PTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAYDNG VFSPEV
Sbjct: 146 PTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAYDNGSVFSPEV 205

Query: 183 LDLTEDDLLEKFALGVSMVTSLSLAVS--------------YKNLLAVAVATDYSFPQAE 242
           LDLTEDDLLEKFALGVSMVTSLSLAVS              YKNLLAVAVATDYSFPQAE
Sbjct: 206 LDLTEDDLLEKFALGVSMVTSLSLAVSYPTLAAAPHMLINAYKNLLAVAVATDYSFPQAE 265

Query: 243 KVKEYLEDPSKFAAAVSVSAVADSISATAAAAA-EEKKEEPAEESDDDIGFSLFD 283
           KVKEYLEDPSKF AAV+VSAVADS SATAAAAA EEKKEEPAEESDDD+GFSLFD
Sbjct: 266 KVKEYLEDPSKFVAAVAVSAVADSSSATAAAAAVEEKKEEPAEESDDDMGFSLFD 320

[Close]

BLAST of Carg18361 vs. ExPASy TrEMBL
Match: A0A6J1FMK2 (60S acidic ribosomal protein P0-like OS=Cucurbita moschata OX=3662 GN=LOC111447179 PE=3 SV=1)

HSP 1 Score: 483.4 bits (1243), Expect = 6.4e-133
Identity = 272/295 (92.20%), Postives = 276/295 (93.56%), Query Frame = 0


Query: 3   QVLIVAADNVGSNQLQNIRKGLRGNSIVLMGKNTMMKRSVRIHSEKTGNKAYLSLLPLLV 62
           QVLIVAADNVGSNQLQNI KGLRG+SIVLMGKNTMMKRSVRI+SEKTGNKAYLSLLP LV
Sbjct: 59  QVLIVAADNVGSNQLQNIWKGLRGDSIVLMGKNTMMKRSVRIYSEKTGNKAYLSLLP-LV 118

Query: 63  GNVGLIFTKGDLKEVTEEVAKYKVGAPARVGLVAPIDVIIPPGNTGLDPSQTSFFQVLNI 122
           GNVGLIFTKGDLKEV+EEVAKYKVGAPARVGLVAPIDVI+PPGNTGLDPSQTSFFQVLNI
Sbjct: 119 GNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVIVPPGNTGLDPSQTSFFQVLNI 178

Query: 123 PTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAYDNGLVFSPEV 182
           PTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAYDNG VFSPEV
Sbjct: 179 PTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAYDNGSVFSPEV 238

Query: 183 LDLTEDDLLEKFALGVSMVTSLSLAVS--------------YKNLLAVAVATDYSFPQAE 242
           LDLTEDDLLEKFALGVSMVTSLSLAVS              YKNLLAVAVATDYSFPQAE
Sbjct: 239 LDLTEDDLLEKFALGVSMVTSLSLAVSYPTLAAAPHMLINAYKNLLAVAVATDYSFPQAE 298

Query: 243 KVKEYLEDPSKFAAAVSVSAVADSISATAAAAA-EEKKEEPAEESDDDIGFSLFD 283
           KVKEYLEDPSKFAAAVSVSAVADS SATAAAAA EEKKEEPAEESDDDIGFSLFD
Sbjct: 299 KVKEYLEDPSKFAAAVSVSAVADSSSATAAAAAVEEKKEEPAEESDDDIGFSLFD 352

[Close]

BLAST of Carg18361 vs. ExPASy TrEMBL
Match: A0A6J1J9L0 (60S acidic ribosomal protein P0 OS=Cucurbita maxima OX=3661 GN=LOC111484789 PE=3 SV=1)

HSP 1 Score: 475.7 bits (1223), Expect = 1.3e-130
Identity = 259/294 (88.10%), Postives = 268/294 (91.16%), Query Frame = 0


Query: 3   QVLIVAADNVGSNQLQNIRKGLRGNSIVLMGKNTMMKRSVRIHSEKTGNKAYLSLLPLLV 62
           QVLIVAADNVGSNQLQNIRKGLRG+S+VLMGKNTMMKRSVRIH+E TGNKAYL+LLPLLV
Sbjct: 27  QVLIVAADNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHAENTGNKAYLNLLPLLV 86

Query: 63  GNVGLIFTKGDLKEVTEEVAKYKVGAPARVGLVAPIDVIIPPGNTGLDPSQTSFFQVLNI 122
           GNVGLIFTKGDLKEV+EEVAKYKVGAPARVGLVAPIDVI+PPGNTGLDPSQTSFFQVLNI
Sbjct: 87  GNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVIVPPGNTGLDPSQTSFFQVLNI 146

Query: 123 PTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAYDNGLVFSPEV 182
           PTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLS YDNG VFSPEV
Sbjct: 147 PTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEV 206

Query: 183 LDLTEDDLLEKFALGVSMVTSLSLAVS--------------YKNLLAVAVATDYSFPQAE 242
           LDLTEDDLLEKFALGVSMVTSLSLAVS              YKNLLAVAVATDYSFPQAE
Sbjct: 207 LDLTEDDLLEKFALGVSMVTSLSLAVSYPTLAAAPHMLINAYKNLLAVAVATDYSFPQAE 266

Query: 243 KVKEYLEDPSKFAAAVSVSAVADSISATAAAAAEEKKEEPAEESDDDIGFSLFD 283
           KVKEYLEDPSKFA AV+VSA     +  AAAA EEKKEEPAEESDDD+GFSLFD
Sbjct: 267 KVKEYLEDPSKFAVAVAVSAADSGAAPAAAAAVEEKKEEPAEESDDDMGFSLFD 320

[Close]

BLAST of Carg18361 vs. ExPASy TrEMBL
Match: A0A6J1H1U9 (60S acidic ribosomal protein P0 OS=Cucurbita moschata OX=3662 GN=LOC111458814 PE=3 SV=1)

HSP 1 Score: 474.9 bits (1221), Expect = 2.3e-130
Identity = 258/294 (87.76%), Postives = 268/294 (91.16%), Query Frame = 0


Query: 3   QVLIVAADNVGSNQLQNIRKGLRGNSIVLMGKNTMMKRSVRIHSEKTGNKAYLSLLPLLV 62
           QVLIVAADNVGSNQLQNIRKGLRG+S+VLMGKNTMMKRSVRIH+E TGNKAYL+LLPLLV
Sbjct: 27  QVLIVAADNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHAENTGNKAYLNLLPLLV 86

Query: 63  GNVGLIFTKGDLKEVTEEVAKYKVGAPARVGLVAPIDVIIPPGNTGLDPSQTSFFQVLNI 122
           GNVGLIFTKGDLKEV+EEVAKYKVGAPARVGLVAPIDVI+PPGNTGLDPSQTSFFQVLNI
Sbjct: 87  GNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVIVPPGNTGLDPSQTSFFQVLNI 146

Query: 123 PTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAYDNGLVFSPEV 182
           PTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLS YDNG VFSPEV
Sbjct: 147 PTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEV 206

Query: 183 LDLTEDDLLEKFALGVSMVTSLSLAVS--------------YKNLLAVAVATDYSFPQAE 242
           LDLTEDDLLEKFA+GVSMVTSLSLAVS              YKNLLAVAVATDYSFPQAE
Sbjct: 207 LDLTEDDLLEKFAMGVSMVTSLSLAVSYPTLAAAPHMLINAYKNLLAVAVATDYSFPQAE 266

Query: 243 KVKEYLEDPSKFAAAVSVSAVADSISATAAAAAEEKKEEPAEESDDDIGFSLFD 283
           KVKEYLEDPSKFA AV+VSA     +  AAAA EEKKEEPAEESDDD+GFSLFD
Sbjct: 267 KVKEYLEDPSKFAVAVAVSAADSGAAPAAAAAVEEKKEEPAEESDDDMGFSLFD 320

[Close]

BLAST of Carg18361 vs. ExPASy TrEMBL
Match: A0A6J1DWE3 (60S acidic ribosomal protein P0 OS=Momordica charantia OX=3673 GN=LOC111023743 PE=3 SV=1)

HSP 1 Score: 471.5 bits (1212), Expect = 2.5e-129
Identity = 255/294 (86.73%), Postives = 268/294 (91.16%), Query Frame = 0


Query: 3   QVLIVAADNVGSNQLQNIRKGLRGNSIVLMGKNTMMKRSVRIHSEKTGNKAYLSLLPLLV 62
           QVLIVAADNVGSNQLQNIRKGLRG+S+VLMGKNTMMKRSVR+HSEKTGNKAYL+LLPLLV
Sbjct: 27  QVLIVAADNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRSVRMHSEKTGNKAYLNLLPLLV 86

Query: 63  GNVGLIFTKGDLKEVTEEVAKYKVGAPARVGLVAPIDVIIPPGNTGLDPSQTSFFQVLNI 122
           GNVGLIFTKGDLKEV+EEVAKYKVGAPARVGLVAPIDVI+PPGNTGLDPSQTSFFQVLNI
Sbjct: 87  GNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVIVPPGNTGLDPSQTSFFQVLNI 146

Query: 123 PTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAYDNGLVFSPEV 182
           PTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVV + YDNG VFSPEV
Sbjct: 147 PTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVQTVYDNGSVFSPEV 206

Query: 183 LDLTEDDLLEKFALGVSMVTSLSLAVS--------------YKNLLAVAVATDYSFPQAE 242
           LD+TEDDLLEKFALGVSMVTSL+LA+S              YKNLLAVAVATDYSFPQAE
Sbjct: 207 LDMTEDDLLEKFALGVSMVTSLALAISFPTLAAAPHMLINAYKNLLAVAVATDYSFPQAE 266

Query: 243 KVKEYLEDPSKFAAAVSVSAVADSISATAAAAAEEKKEEPAEESDDDIGFSLFD 283
           KVKEYLEDPSKFA AV+VSA     +  AAAA EEKKEEPAEESDDD+GFSLFD
Sbjct: 267 KVKEYLEDPSKFAVAVAVSAADTGSAPAAAAAVEEKKEEPAEESDDDLGFSLFD 320

[Close]

BLAST of Carg18361 vs. TAIR 10
Match: AT2G40010.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 418.3 bits (1074), Expect = 4.9e-117
Identity = 226/293 (77.13%), Postives = 253/293 (86.35%), Query Frame = 0


Query: 3   QVLIVAADNVGSNQLQNIRKGLRGNSIVLMGKNTMMKRSVRIHSEKTGNKAYLSLLPLLV 62
           Q+L+VAADNVGS QLQNIRKGLRG+S+VLMGKNTMMKRSVRIH++KTGN+A+LSLLPLL 
Sbjct: 27  QILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHADKTGNQAFLSLLPLLQ 86

Query: 63  GNVGLIFTKGDLKEVTEEVAKYKVGAPARVGLVAPIDVIIPPGNTGLDPSQTSFFQVLNI 122
           GNVGLIFTKGDLKEV+EEVAKYKVGAPARVGLVAPIDV++ PGNTGLDPSQTSFFQVLNI
Sbjct: 87  GNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNI 146

Query: 123 PTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAYDNGLVFSPEV 182
           PTKINKGTVEIITPVELIKKG+KVGSSEAALLAKLGIRPFSYGLVV S YDNG VF+PEV
Sbjct: 147 PTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVESVYDNGSVFNPEV 206

Query: 183 LDLTEDDLLEKFALGVSMVTSLSLAVS--------------YKNLLAVAVATDYSFPQAE 242
           L+LTEDDL+EKFA GVSM+T+LSLA+S              YKN+LAVA+AT+YSFPQAE
Sbjct: 207 LNLTEDDLVEKFAAGVSMITALSLAISYPTVAAAPHMFLNAYKNVLAVALATEYSFPQAE 266

Query: 243 KVKEYLEDPSKFAAAVSVSAVADSISATAAAAAEEKKEEPAEESDDDIGFSLF 282
            VKE+L+DP+KFA AV+     +S  A  A A E   EE AEESD D+GF LF
Sbjct: 267 NVKEFLKDPTKFAVAVAAPVSGESGGAVVAVAVE---EEAAEESDGDMGFDLF 316

[Close]

BLAST of Carg18361 vs. TAIR 10
Match: AT3G11250.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 416.4 bits (1069), Expect = 1.8e-116
Identity = 232/297 (78.11%), Postives = 253/297 (85.19%), Query Frame = 0


Query: 3   QVLIVAADNVGSNQLQNIRKGLRGNSIVLMGKNTMMKRSVRIHSEKTGNKAYLSLLPLLV 62
           Q+L+VAADNVGS QLQNIRKGLRG+S+VLMGKNTMMKRSVRIHSE +GN A L+LLPLL 
Sbjct: 26  QILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENSGNTAILNLLPLLQ 85

Query: 63  GNVGLIFTKGDLKEVTEEVAKYKVGAPARVGLVAPIDVIIPPGNTGLDPSQTSFFQVLNI 122
           GNVGLIFTKGDLKEV+EEVAKYKVGAPARVGLVAPIDV++ PGNTGLDPSQTSFFQVLNI
Sbjct: 86  GNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNI 145

Query: 123 PTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAYDNGLVFSPEV 182
           PTKINKGTVEIITPVELIK+G+KVGSSEAALLAKLGIRPFSYGLVV S YDNG VFSPEV
Sbjct: 146 PTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEV 205

Query: 183 LDLTEDDLLEKFALGVSMVTSLSLAVS--------------YKNLLAVAVATDYSFPQAE 242
           LDLTED L+EKFA G+SMVTSL+LAVS              YKN LA+AVATDY+FPQAE
Sbjct: 206 LDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATDYTFPQAE 265

Query: 243 KVKEYLEDPSKF---AAAVSVSAVADSISATAAAAAEEKKEEPAEESDDDIGFSLFD 283
           KVKE+L+DPSKF   AAAVS  A   S  A AAA  EEKKEE ++E D + GF LFD
Sbjct: 266 KVKEFLKDPSKFVVAAAAVSADAGGGSAQAGAAAKVEEKKEE-SDEEDYEGGFGLFD 321

[Close]

BLAST of Carg18361 vs. TAIR 10
Match: AT3G09200.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 410.2 bits (1053), Expect = 1.3e-114
Identity = 226/294 (76.87%), Postives = 251/294 (85.37%), Query Frame = 0


Query: 3   QVLIVAADNVGSNQLQNIRKGLRGNSIVLMGKNTMMKRSVRIHSEKTGNKAYLSLLPLLV 62
           Q+L+VAADNVGS QLQNIRKGLRG+S+VLMGKNTMMKRSVRIHSE TGN A L+LLPLL 
Sbjct: 26  QILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENTGNTAILNLLPLLQ 85

Query: 63  GNVGLIFTKGDLKEVTEEVAKYKVGAPARVGLVAPIDVIIPPGNTGLDPSQTSFFQVLNI 122
           GNVGLIFTKGDLKEV+EEVAKYKVGAPARVGLVAPIDV++ PGNTGLDPSQTSFFQVLNI
Sbjct: 86  GNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNI 145

Query: 123 PTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAYDNGLVFSPEV 182
           PTKINKGTVEIITPVELIK+G+KVGSSEAALLAKLGIRPFSYGLVV S YDNG VFSPEV
Sbjct: 146 PTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEV 205

Query: 183 LDLTEDDLLEKFALGVSMVTSLSLAVS--------------YKNLLAVAVATDYSFPQAE 242
           LDLTED L+EKFA G+SMVTSL+LAVS              YKN LA+AVAT+Y+FPQAE
Sbjct: 206 LDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATEYTFPQAE 265

Query: 243 KVKEYLEDPSKFAAAVSVSAVADSISATAAAAAEEKKEEPAEESDDDIGFSLFD 283
           KVKEYL+DPSKFA A SV+AV+      A AAA+ +++E ++E D    F LFD
Sbjct: 266 KVKEYLKDPSKFAVA-SVAAVSADAGGGAPAAAKVEEKEESDEEDYGGDFGLFD 318

[Close]

BLAST of Carg18361 vs. TAIR 10
Match: AT3G09200.2 (Ribosomal protein L10 family protein )

HSP 1 Score: 348.2 bits (892), Expect = 6.2e-96
Identity = 194/260 (74.62%), Postives = 217/260 (83.46%), Query Frame = 0


Query: 37  MMKRSVRIHSEKTGNKAYLSLLPLLVGNVGLIFTKGDLKEVTEEVAKYKVGAPARVGLVA 96
           ++ RSVRIHSE TGN A L+LLPLL GNVGLIFTKGDLKEV+EEVAKYKVGAPARVGLVA
Sbjct: 27  ILVRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 86

Query: 97  PIDVIIPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGEKVGSSEAALLAK 156
           PIDV++ PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIK+G+KVGSSEAALLAK
Sbjct: 87  PIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAK 146

Query: 157 LGIRPFSYGLVVLSAYDNGLVFSPEVLDLTEDDLLEKFALGVSMVTSLSLAVS------- 216
           LGIRPFSYGLVV S YDNG VFSPEVLDLTED L+EKFA G+SMVTSL+LAVS       
Sbjct: 147 LGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAA 206

Query: 217 -------YKNLLAVAVATDYSFPQAEKVKEYLEDPSKFAAAVSVSAVADSISATAAAAAE 276
                  YKN LA+AVAT+Y+FPQAEKVKEYL+DPSKFA A SV+AV+      A AAA+
Sbjct: 207 PHMFINAYKNALAIAVATEYTFPQAEKVKEYLKDPSKFAVA-SVAAVSADAGGGAPAAAK 266

Query: 277 EKKEEPAEESDDDIGFSLFD 283
            +++E ++E D    F LFD
Sbjct: 267 VEEKEESDEEDYGGDFGLFD 285

[Close]

BLAST of Carg18361 vs. TAIR 10
Match: AT1G25260.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 51.6 bits (122), Expect = 1.2e-06
Identity = 45/199 (22.61%), Postives = 90/199 (45.23%), Query Frame = 0


Query: 4   VLIVAADNVGSNQLQNIRKGLRGNSIVLMGKNTMMKRSVRIHSEKTGNKAYLSLLPLLVG 63
           V + + +N+ + + +  R+  R N    +G N +M+ ++   +E         +  LL G
Sbjct: 40  VYVFSFENMRNIKFKEFRQQFRHNGKFFLGSNKVMQVALGRSAEDELRSGIYKVSKLLRG 99

Query: 64  NVGLIFTKGDLKEVTEEVAKYKVGAPARVGLVAPIDVIIPPGN-TGLDPSQTSFFQVLNI 123
           + GL+ T    +EV      Y+    +R G +A   V +  G             + L +
Sbjct: 100 DTGLLVTDMPKEEVESLFNAYEDSDFSRTGSIAVETVELKEGPLEQFTHEMEPLLRKLEM 159

Query: 124 PTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAYDNGLVFSPEV 183
           P ++NKGTVE++    + ++G+++    A +L  L ++  ++ L +L  +      SP  
Sbjct: 160 PVRLNKGTVELVADFVVCEEGKQLSPKSAHILRLLRMKMATFKLNLLCRW------SPSD 219

Query: 184 LDLTEDDLLEKFALGVSMV 202
            +L  +DL E +   +S V
Sbjct: 220 FELYREDLSELYREDLSDV 232

The following BLAST results are available for this feature:

BLAST of Carg18361 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7030679.1	3.3e-144	100.00	hypothetical protein SDJN02_04716, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022996175.1	2.4e-134	91.86	60S acidic ribosomal protein P0-like [Cucurbita maxima]	[more]
XP_022941971.1	1.3e-132	92.20	60S acidic ribosomal protein P0-like, partial [Cucurbita moschata]	[more]
XP_038892643.1	3.3e-131	88.81	60S acidic ribosomal protein P0 [Benincasa hispida]	[more]
XP_022987157.1	2.8e-130	88.10	60S acidic ribosomal protein P0 [Cucurbita maxima]	[more]

BLAST of Carg18361 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P50346	4.7e-125	81.02	60S acidic ribosomal protein P0 OS=Glycine max OX=3847 PE=2 SV=1	[more]
P50345	8.1e-117	77.63	60S acidic ribosomal protein P0 OS=Lupinus luteus OX=3873 PE=2 SV=1	[more]
O04204	6.8e-116	77.13	60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana OX=3702 GN=RPP0A PE=1 ...	[more]
P57691	2.6e-115	78.11	60S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana OX=3702 GN=RPP0C PE=1 ...	[more]
P41095	2.9e-114	74.15	60S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica OX=39947 GN=60SP...	[more]

BLAST of Carg18361 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K610	1.2e-134	91.86	60S acidic ribosomal protein P0 OS=Cucurbita maxima OX=3661 GN=LOC111491481 PE=3...	[more]
A0A6J1FMK2	6.4e-133	92.20	60S acidic ribosomal protein P0-like OS=Cucurbita moschata OX=3662 GN=LOC1114471...	[more]
A0A6J1J9L0	1.3e-130	88.10	60S acidic ribosomal protein P0 OS=Cucurbita maxima OX=3661 GN=LOC111484789 PE=3...	[more]
A0A6J1H1U9	2.3e-130	87.76	60S acidic ribosomal protein P0 OS=Cucurbita moschata OX=3662 GN=LOC111458814 PE...	[more]
A0A6J1DWE3	2.5e-129	86.73	60S acidic ribosomal protein P0 OS=Momordica charantia OX=3673 GN=LOC111023743 P...	[more]

BLAST of Carg18361 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40010.1	4.9e-117	77.13	Ribosomal protein L10 family protein	[more]
AT3G11250.1	1.8e-116	78.11	Ribosomal protein L10 family protein	[more]
AT3G09200.1	1.3e-114	76.87	Ribosomal protein L10 family protein	[more]
AT3G09200.2	6.2e-96	74.62	Ribosomal protein L10 family protein	[more]
AT1G25260.1	1.2e-06	22.61	Ribosomal protein L10 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043164	50S ribosomal protein L10, insertion domain superfamily	GENE3D	3.90.105.20		coord: 86..164 e-value: 3.1E-74 score: 250.7
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 209..281 e-value: 5.0E-15 score: 55.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 267..282
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 260..282
None	No IPR available	PANTHER	PTHR45699	60S ACIDIC RIBOSOMAL PROTEIN P0	coord: 2..282
None	No IPR available	PANTHER	PTHR45699:SF18	60S ACIDIC RIBOSOMAL PROTEIN P0-1	coord: 2..282
None	No IPR available	CDD	cd05795	Ribosomal_P0_L10e	coord: 3..161 e-value: 2.15156E-79 score: 235.931
IPR043141	Ribosomal protein L10-like domain superfamily	GENE3D	3.30.70.1730		coord: 3..188 e-value: 3.1E-74 score: 250.7
IPR043141	Ribosomal protein L10-like domain superfamily	SUPERFAMILY	160369	Ribosomal protein L10-like	coord: 4..110
IPR030670	60S acidic ribosomal protein P0	PIRSF	PIRSF039087	L10E	coord: 1..282 e-value: 1.9E-107 score: 356.8
IPR001790	Ribosomal protein L10P	PFAM	PF00466	Ribosomal_L10	coord: 3..84 e-value: 7.6E-15 score: 54.9
IPR040637	60S ribosomal protein L10P, insertion domain	PFAM	PF17777	RL10P_insert	coord: 90..159 e-value: 4.4E-21 score: 74.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18361-RA	Carg18361-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0000027	ribosomal large subunit assembly
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0070180	large ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome