Carg18306 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18306
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	nucleolin-like
Location	Carg_Chr04: 17721472 .. 17722050 (-)
RNA-Seq Expression	Carg18306
Synteny	Carg18306

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAAACTACTAACACAGAGGAGCCTGTATTTGATGCGAAGCGCAAAGTTGATACCTGCTCTGAAGAGAAACAGGAGCGTTCGAACAAAATTCAGAAGCTCGAAGTGGTTGAGGGCGATTCCTGCAATGCTGTGAAGAATGGTGTGAGTGGTGGAGGGATTGATGGCGATTCTTTGGTTGAGGGAGGGAAAGATGGTGGAGTTTGTGTGGATGTGGGAGAAGCAGAAGATGAGGATTATCAGGAGGTGGACAGCGACGAGGATGAGGAGGAAGATGACAGCGACGATGGTGGAAAGTTGAGTGGGAAAATGGATGAGGATCGTAAGGGGAAGGGTATCATGAAGGACGACAAAGGAAAAGGGAAATTTATTGAGGAGGAGGAAGACGACGACGACGACGATGATGGAAGTGAGTTAGGCTCTGAAGAGAGCGATTTGTCGGATGATCCGCTTACGGAGGTCGATTTGGACAACATACTTCCTTCAAGAACGCGAAGGCGGACTGTTCATCCTGGAGTTTATTTTGCTACGGATCTGGGGAACGACAACGATGATAGCAGCGATAGCGATGCTTGA

mRNA sequence

ATGGCGGAAACTACTAACACAGAGGAGCCTGTATTTGATGCGAAGCGCAAAGTTGATACCTGCTCTGAAGAGAAACAGGAGCGTTCGAACAAAATTCAGAAGCTCGAAGTGGTTGAGGGCGATTCCTGCAATGCTGTGAAGAATGGTGTGAGTGGTGGAGGGATTGATGGCGATTCTTTGGTTGAGGGAGGGAAAGATGGTGGAGTTTGTGTGGATGTGGGAGAAGCAGAAGATGAGGATTATCAGGAGGTGGACAGCGACGAGGATGAGGAGGAAGATGACAGCGACGATGGTGGAAAGTTGAGTGGGAAAATGGATGAGGATCGTAAGGGGAAGGGTATCATGAAGGACGACAAAGGAAAAGGGAAATTTATTGAGGAGGAGGAAGACGACGACGACGACGATGATGGAAGTGAGTTAGGCTCTGAAGAGAGCGATTTGTCGGATGATCCGCTTACGGAGGTCGATTTGGACAACATACTTCCTTCAAGAACGCGAAGGCGGACTGTTCATCCTGGAGTTTATTTTGCTACGGATCTGGGGAACGACAACGATGATAGCAGCGATAGCGATGCTTGA

Coding sequence (CDS)

ATGGCGGAAACTACTAACACAGAGGAGCCTGTATTTGATGCGAAGCGCAAAGTTGATACCTGCTCTGAAGAGAAACAGGAGCGTTCGAACAAAATTCAGAAGCTCGAAGTGGTTGAGGGCGATTCCTGCAATGCTGTGAAGAATGGTGTGAGTGGTGGAGGGATTGATGGCGATTCTTTGGTTGAGGGAGGGAAAGATGGTGGAGTTTGTGTGGATGTGGGAGAAGCAGAAGATGAGGATTATCAGGAGGTGGACAGCGACGAGGATGAGGAGGAAGATGACAGCGACGATGGTGGAAAGTTGAGTGGGAAAATGGATGAGGATCGTAAGGGGAAGGGTATCATGAAGGACGACAAAGGAAAAGGGAAATTTATTGAGGAGGAGGAAGACGACGACGACGACGATGATGGAAGTGAGTTAGGCTCTGAAGAGAGCGATTTGTCGGATGATCCGCTTACGGAGGTCGATTTGGACAACATACTTCCTTCAAGAACGCGAAGGCGGACTGTTCATCCTGGAGTTTATTTTGCTACGGATCTGGGGAACGACAACGATGATAGCAGCGATAGCGATGCTTGA

Protein sequence

MAETTNTEEPVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDYQEVDSDEDEEEDDSDDGGKLSGKMDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA

Homology

[Close]

BLAST of Carg18306 vs. NCBI nr
Match: KAG6601992.1 (B3 domain-containing transcription factor FUS3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 351.3 bits (900), Expect = 5.3e-93
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   MAETTNTEEPVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSL 60
           MAETTNTEEPVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSL
Sbjct: 275 MAETTNTEEPVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSL 334

Query: 61  VEGGKDGGVCVDVGEAEDEDYQEVDSDEDEEEDDSDDGGKLSGKMDEDRKGKGIMKDDKG 120
           VEGGKDGGVCVDVGEAEDEDYQEVDSDEDEEEDDSDDGGKLSGKMDEDRKGKGIMKDDKG
Sbjct: 335 VEGGKDGGVCVDVGEAEDEDYQEVDSDEDEEEDDSDDGGKLSGKMDEDRKGKGIMKDDKG 394

Query: 121 KGKFIEEEEDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDL 180
           KGKFIEEEEDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDL
Sbjct: 395 KGKFIEEEEDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDL 454

Query: 181 GNDNDDSSDSDA 193
           GNDNDDSSDSDA
Sbjct: 455 GNDNDDSSDSDA 466

[Close]

BLAST of Carg18306 vs. NCBI nr
Match: KAG7032689.1 (hypothetical protein SDJN02_06739, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 351.3 bits (900), Expect = 5.3e-93
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   MAETTNTEEPVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSL 60
           MAETTNTEEPVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSL
Sbjct: 1   MAETTNTEEPVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSL 60

Query: 61  VEGGKDGGVCVDVGEAEDEDYQEVDSDEDEEEDDSDDGGKLSGKMDEDRKGKGIMKDDKG 120
           VEGGKDGGVCVDVGEAEDEDYQEVDSDEDEEEDDSDDGGKLSGKMDEDRKGKGIMKDDKG
Sbjct: 61  VEGGKDGGVCVDVGEAEDEDYQEVDSDEDEEEDDSDDGGKLSGKMDEDRKGKGIMKDDKG 120

Query: 121 KGKFIEEEEDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDL 180
           KGKFIEEEEDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDL
Sbjct: 121 KGKFIEEEEDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDL 180

Query: 181 GNDNDDSSDSDA 193
           GNDNDDSSDSDA
Sbjct: 181 GNDNDDSSDSDA 192

[Close]

BLAST of Carg18306 vs. NCBI nr
Match: XP_023551987.1 (nuclear polyadenylated RNA-binding protein 3-like [Cucurbita pepo subsp. pepo] >XP_023551995.1 nuclear polyadenylated RNA-binding protein 3-like [Cucurbita pepo subsp. pepo] >XP_023552002.1 nuclear polyadenylated RNA-binding protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 341.7 bits (875), Expect = 4.2e-90
Identity = 187/192 (97.40%), Postives = 189/192 (98.44%), Query Frame = 0


Query: 1   MAETTNTEEPVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSL 60
           MAETTNTEEPVFD KRKVD CSEEKQERSNKIQKLEVVEGDSCNAVKNGVSG GIDGDSL
Sbjct: 1   MAETTNTEEPVFDVKRKVDPCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGEGIDGDSL 60

Query: 61  VEGGKDGGVCVDVGEAEDEDYQEVDSDEDEEEDDSDDGGKLSGKMDEDRKGKGIMKDDKG 120
           VEGGKDGGVCVDVGEAEDEDY+EVDSDEDEEEDDSDDGGKLSGK+DEDRKGKGIMKDDKG
Sbjct: 61  VEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEEDDSDDGGKLSGKVDEDRKGKGIMKDDKG 120

Query: 121 KGKFIEEEEDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDL 180
           KGKFIEEEEDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDL
Sbjct: 121 KGKFIEEEEDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDL 180

Query: 181 GNDNDDSSDSDA 193
           GNDNDDSSDSDA
Sbjct: 181 GNDNDDSSDSDA 192

[Close]

BLAST of Carg18306 vs. NCBI nr
Match: XP_022921946.1 (nucleolin-like [Cucurbita moschata] >XP_022921954.1 nucleolin-like [Cucurbita moschata] >XP_022921963.1 nucleolin-like [Cucurbita moschata] >XP_022921972.1 nucleolin-like [Cucurbita moschata])

HSP 1 Score: 337.8 bits (865), Expect = 6.1e-89
Identity = 188/194 (96.91%), Postives = 190/194 (97.94%), Query Frame = 0


Query: 1   MAETTNTEEPVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSL 60
           MAETTNTEE VFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSL
Sbjct: 1   MAETTNTEESVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSL 60

Query: 61  VEGGKDGGVCVDVGEAEDEDYQEVDSDEDEEEDDSDDGGKLSGKMDEDRKGKGIMKDDKG 120
           VEGGKDGGVCVDVGEAEDEDY+EVDSDEDEEED SDDGGKLSGK+DEDRKGKGIMKDDKG
Sbjct: 61  VEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEEDGSDDGGKLSGKVDEDRKGKGIMKDDKG 120

Query: 121 KGKFIEEEE--DDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFAT 180
           KGKFIEEEE  DDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFAT
Sbjct: 121 KGKFIEEEEDDDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFAT 180

Query: 181 DLGNDNDDSSDSDA 193
           DLGNDNDDSSDSDA
Sbjct: 181 DLGNDNDDSSDSDA 194

[Close]

BLAST of Carg18306 vs. NCBI nr
Match: XP_022990828.1 (nucleolin-like [Cucurbita maxima] >XP_022990829.1 nucleolin-like [Cucurbita maxima] >XP_022990830.1 nucleolin-like [Cucurbita maxima] >XP_022990831.1 nucleolin-like [Cucurbita maxima] >XP_022990832.1 nucleolin-like [Cucurbita maxima])

HSP 1 Score: 330.9 bits (847), Expect = 7.5e-87
Identity = 183/192 (95.31%), Postives = 187/192 (97.40%), Query Frame = 0


Query: 1   MAETTNTEEPVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSL 60
           MAETTNTEEPVFDAKRKVD CSEEKQERSNKIQKLEVVEGDSCNAVKNGVSG GIDGDSL
Sbjct: 1   MAETTNTEEPVFDAKRKVDPCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGEGIDGDSL 60

Query: 61  VEGGKDGGVCVDVGEAEDEDYQEVDSDEDEEEDDSDDGGKLSGKMDEDRKGKGIMKDDKG 120
           VEGGKDGGVCVDVGEAEDEDY+EVDSDEDEEEDDSDDGGKLSGK+DEDRKGKGIMKDDKG
Sbjct: 61  VEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEEDDSDDGGKLSGKVDEDRKGKGIMKDDKG 120

Query: 121 KGKFIEEEEDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDL 180
           KGKFI+EEE   DDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDL
Sbjct: 121 KGKFIDEEE---DDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDL 180

Query: 181 GNDNDDSSDSDA 193
           GN+NDDSSDSDA
Sbjct: 181 GNENDDSSDSDA 189

[Close]

BLAST of Carg18306 vs. ExPASy TrEMBL
Match: A0A6J1E206 (nucleolin-like OS=Cucurbita moschata OX=3662 GN=LOC111430049 PE=4 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 3.0e-89
Identity = 188/194 (96.91%), Postives = 190/194 (97.94%), Query Frame = 0


Query: 1   MAETTNTEEPVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSL 60
           MAETTNTEE VFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSL
Sbjct: 1   MAETTNTEESVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSL 60

Query: 61  VEGGKDGGVCVDVGEAEDEDYQEVDSDEDEEEDDSDDGGKLSGKMDEDRKGKGIMKDDKG 120
           VEGGKDGGVCVDVGEAEDEDY+EVDSDEDEEED SDDGGKLSGK+DEDRKGKGIMKDDKG
Sbjct: 61  VEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEEDGSDDGGKLSGKVDEDRKGKGIMKDDKG 120

Query: 121 KGKFIEEEE--DDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFAT 180
           KGKFIEEEE  DDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFAT
Sbjct: 121 KGKFIEEEEDDDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFAT 180

Query: 181 DLGNDNDDSSDSDA 193
           DLGNDNDDSSDSDA
Sbjct: 181 DLGNDNDDSSDSDA 194

[Close]

BLAST of Carg18306 vs. ExPASy TrEMBL
Match: A0A6J1JJY9 (nucleolin-like OS=Cucurbita maxima OX=3661 GN=LOC111487605 PE=4 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 3.6e-87
Identity = 183/192 (95.31%), Postives = 187/192 (97.40%), Query Frame = 0


Query: 1   MAETTNTEEPVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSL 60
           MAETTNTEEPVFDAKRKVD CSEEKQERSNKIQKLEVVEGDSCNAVKNGVSG GIDGDSL
Sbjct: 1   MAETTNTEEPVFDAKRKVDPCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGEGIDGDSL 60

Query: 61  VEGGKDGGVCVDVGEAEDEDYQEVDSDEDEEEDDSDDGGKLSGKMDEDRKGKGIMKDDKG 120
           VEGGKDGGVCVDVGEAEDEDY+EVDSDEDEEEDDSDDGGKLSGK+DEDRKGKGIMKDDKG
Sbjct: 61  VEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEEDDSDDGGKLSGKVDEDRKGKGIMKDDKG 120

Query: 121 KGKFIEEEEDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDL 180
           KGKFI+EEE   DDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDL
Sbjct: 121 KGKFIDEEE---DDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDL 180

Query: 181 GNDNDDSSDSDA 193
           GN+NDDSSDSDA
Sbjct: 181 GNENDDSSDSDA 189

[Close]

BLAST of Carg18306 vs. ExPASy TrEMBL
Match: A0A6J1CKB5 (prothymosin alpha-B OS=Momordica charantia OX=3673 GN=LOC111011780 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 1.3e-49
Identity = 135/204 (66.18%), Postives = 154/204 (75.49%), Query Frame = 0


Query: 1   MAETTNTEEPVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGG------G 60
           MAETT+ EE  FDAKRK D C E K+E SNKIQKLEVV+ +SC+ VK   +G        
Sbjct: 1   MAETTSREETTFDAKRKPDPCCEAKEEHSNKIQKLEVVKDESCHDVKKSENGDHKRSDEH 60

Query: 61  IDGDSLVEGGKDG--GVCVDVGEAEDEDYQEVD-SDEDEEEDDSDDGGKLSGKMDEDRKG 120
           ID DSL   GKDG  G  VD GEA+DE+  E D  DE++E D+ +D    + +  EDRKG
Sbjct: 61  IDDDSLAAEGKDGEVGAGVDAGEADDEEDDEEDYEDENDEVDEEED----ASEAVEDRKG 120

Query: 121 KGIMKDDKGKGKFIEEEEDDDDDDD---GSELGSEESDLSDDPLTEVDLDNILPSRTRRR 180
           KGI+KDDKGKGK IEE++DDDD+D    GSELGSEESDLSDDPLTEVDLDNILPSRTRRR
Sbjct: 121 KGIVKDDKGKGKLIEEDDDDDDEDSSDGGSELGSEESDLSDDPLTEVDLDNILPSRTRRR 180

Query: 181 TVHPGVYFATDLGNDNDDSSDSDA 193
           TVHPGVYFA DLGND+DDSSDSDA
Sbjct: 181 TVHPGVYFAKDLGNDDDDSSDSDA 200

[Close]

BLAST of Carg18306 vs. ExPASy TrEMBL
Match: A0A0A0KMR8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G312330 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 1.3e-47
Identity = 137/209 (65.55%), Postives = 155/209 (74.16%), Query Frame = 0


Query: 1   MAETTNTEEPV-FDAKRK-VDTCSEEKQERSNKIQKLEVVEG-DSCNAVKNGVSGGGIDG 60
           MAE TN EE V FDAKRK  D+C + K+ERSNKIQKLEVVEG +SCN V N    G   G
Sbjct: 1   MAEITNREEEVAFDAKRKPTDSCFQPKEERSNKIQKLEVVEGEESCNYVNNNAENGDHKG 60

Query: 61  ---------DSLVEG-GKDG--GVCVDVGEAEDEDYQEVDSDEDEEEDDSDDGGKLSGKM 120
                     +++EG G DG  G  +D G+ E+EDY        E+EDDS+D  K S K+
Sbjct: 61  SDEQVDNISSTVLEGKGDDGVDGASLDAGD-EEEDY--------EDEDDSEDDEKSSAKV 120

Query: 121 DEDRKGKGIMKDDKGKGKFIEEEEDDDDD--DDGSELGSEESDLSDDPLTEVDLDNILPS 180
            EDRKGKGIMKDDKGKGK IEE++DDD+D  DDGS+L SEESDLSDDPL EVDLDNILPS
Sbjct: 121 AEDRKGKGIMKDDKGKGKLIEEDDDDDEDSSDDGSQLDSEESDLSDDPLAEVDLDNILPS 180

Query: 181 RTRRRTVHPGVYFATDLGNDNDDSSDSDA 193
           RTRRRTVHPGVYFATDLGND+DDSSDSDA
Sbjct: 181 RTRRRTVHPGVYFATDLGNDDDDSSDSDA 200

[Close]

BLAST of Carg18306 vs. ExPASy TrEMBL
Match: A0A6J1K0H1 (nucleolin-like OS=Cucurbita maxima OX=3661 GN=LOC111489076 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 8.1e-47
Identity = 135/209 (64.59%), Postives = 151/209 (72.25%), Query Frame = 0


Query: 1   MAETTNT-EEPVFDAKRK-VDTCSEEKQERSNKIQKLEVVEGDSCNAV-KNGVSGGGIDG 60
           MAET ++ EE  FDAKRK  D C E K+ERSNKIQKLEVVEG+ CN V KNG +G    G
Sbjct: 1   MAETASSREETAFDAKRKPADPCCEAKEERSNKIQKLEVVEGEPCNDVKKNGDNGDHKQG 60

Query: 61  DSLVEG------GKDGGVC---VDVGEAEDEDYQEVDSDEDEEEDDSDDGGKLSGKMDED 120
           D  ++       GKD GV    VD G  E EDY         +EDD ++G K SGK  +D
Sbjct: 61  DEQIDSISSAAEGKDDGVFAADVDAGN-EGEDY--------NDEDDCENGEKSSGKAAKD 120

Query: 121 RKGKGIMKDDKGKGKFIEEEEDDDDD-----DDGSELGSEESDLSDDPLTEVDLDNILPS 180
           RKGKGIMKDDKGKGK IEE++DDDDD     DDGSE  +EESDLSDDPL EVDLDNILPS
Sbjct: 121 RKGKGIMKDDKGKGKLIEEDDDDDDDDEDSSDDGSEFDNEESDLSDDPLAEVDLDNILPS 180

Query: 181 RTRRRTVHPGVYFATDLGNDNDDSSDSDA 193
           RTRRRTVHPGVYFATDLGN++DDSSDSDA
Sbjct: 181 RTRRRTVHPGVYFATDLGNEDDDSSDSDA 200

[Close]

BLAST of Carg18306 vs. TAIR 10
Match: AT1G12830.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 39778 Blast hits to 22088 proteins in 1060 species: Archae - 152; Bacteria - 6161; Metazoa - 14109; Fungi - 6144; Plants - 2156; Viruses - 601; Other Eukaryotes - 10455 (source: NCBI BLink). )

HSP 1 Score: 99.4 bits (246), Expect = 3.4e-21
Identity = 87/221 (39.37%), Postives = 121/221 (54.75%), Query Frame = 0


Query: 1   MAETTNTEEPVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGG------ 60
           MA+  N ++  F  KRK D   +++   +NK QKL      + +  K+G + G       
Sbjct: 1   MADVENQQDSSFPVKRKSDLFCQDQDNVTNKAQKLNPSLNSADSESKDGETNGSGQIENL 60

Query: 61  -------IDGDSLVEGGK-----DGGVCVDVGEAEDEDYQEVDSDEDEEEDDSDDGGKLS 120
                  I  +S V   K     + GV  DVG  E+++ +E + ++DEEE++ ++     
Sbjct: 61  NSSTEETIGAESSVLSEKAAEEVESGVIGDVGAEEEQEDEEDEEEDDEEEEEEEE----- 120

Query: 121 GKMDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDDGSELGSE------ESDLSDDPLTEVD 180
                DRKGKGI ++DKGKGK IE EE DD+DD   +   E      ESD SDDPL EVD
Sbjct: 121 ---VVDRKGKGISREDKGKGKMIEVEESDDEDDSDDDEDDEGFDEDDESDFSDDPLAEVD 180

Query: 181 LDNILPSRTRRRTVHPGVYFATDLGN-----DNDDSSDSDA 193
           LDNILPSRTRRR+  PGV+   +  N     ++D+SSDSDA
Sbjct: 181 LDNILPSRTRRRSSQPGVFIPNEFSNRHVNDEDDESSDSDA 213

The following BLAST results are available for this feature:

BLAST of Carg18306 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601992.1	5.3e-93	100.00	B3 domain-containing transcription factor FUS3, partial [Cucurbita argyrosperma ...	[more]
KAG7032689.1	5.3e-93	100.00	hypothetical protein SDJN02_06739, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023551987.1	4.2e-90	97.40	nuclear polyadenylated RNA-binding protein 3-like [Cucurbita pepo subsp. pepo] >...	[more]
XP_022921946.1	6.1e-89	96.91	nucleolin-like [Cucurbita moschata] >XP_022921954.1 nucleolin-like [Cucurbita mo...	[more]
XP_022990828.1	7.5e-87	95.31	nucleolin-like [Cucurbita maxima] >XP_022990829.1 nucleolin-like [Cucurbita maxi...	[more]

BLAST of Carg18306 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg18306 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E206	3.0e-89	96.91	nucleolin-like OS=Cucurbita moschata OX=3662 GN=LOC111430049 PE=4 SV=1	[more]
A0A6J1JJY9	3.6e-87	95.31	nucleolin-like OS=Cucurbita maxima OX=3661 GN=LOC111487605 PE=4 SV=1	[more]
A0A6J1CKB5	1.3e-49	66.18	prothymosin alpha-B OS=Momordica charantia OX=3673 GN=LOC111011780 PE=4 SV=1	[more]
A0A0A0KMR8	1.3e-47	65.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G312330 PE=4 SV=1	[more]
A0A6J1K0H1	8.1e-47	64.59	nucleolin-like OS=Cucurbita maxima OX=3661 GN=LOC111489076 PE=4 SV=1	[more]

BLAST of Carg18306 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G12830.1	3.4e-21	39.37	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..192
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..126
None	No IPR available	PANTHER	PTHR36899	OS04G0395700 PROTEIN	coord: 1..192

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18306-RA	Carg18306-RA	mRNA