Carg18290 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18290
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein REVEILLE 1-like isoform X1
Location	Carg_Chr04: 17855067 .. 17857243 (-)
RNA-Seq Expression	Carg18290
Synteny	Carg18290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGTTTATTGTTTTCGGTGTAATTAGTTTCTCAAGTTGTTGTGTTCATTTGTAGTGGGTTGTATGTTCTCTGTGTGACCAGGAGTTGTTTGATGTTCAGAATGAAGTTTGTTGTTTGTAATTTTGTTCTCTTGGTCTTCTTCGTGATCGAGTGATTAGTTGTTCTTTCTTTAGCTCTTGTACGGACGAAATCGTGCTTTGTTTTCCTGAAAGTCTACTGGCGCGAATCTGATTCTTTGTGGTTTTTGAGATTGAAGCCCTAGGAACTGTGATTCAGAGCCCGATCACTTAATTCTAGGGTTTTGAAGAATTTTATCTCGATAATGAGTTGAATTAGGACTGTTAACGCGCGTTGAAGTTGAACTAAGTCAGTTTGTTATCAAGCTGTTGAATTCAAACAGTCGAAAATACGACTGTTTAGGGATTGGTTATTCGGATTGTTGAAAATTCGTGAGGATTTATTGGTTACTGTAAATTCAACGGCAATCAACTAAGTGGAAACGAAAAGAAAAGGACACACAGGTGTTTGGCTCCGTGAAAGTAGAGGAAGATTTTGCACGGCGAGAACATCCATGGGTGCCGCAAACATGCAATCACAAGTATGAATATTCCATTCTTTTCCTCATCCTCTTCTCTCACCCTTTGAGATCGTGTTATTTATTGGTATGAGAACAGAGAATTAATAGGGAAAACGTGTTTTATTCTTCTTTTGTTCCTTATGCCCATGTGATGTATTAGATGATTTTTGGTCAGTATTGAAATTTGAACCAACAGAAATGTACAATCATGCCAAAATCTGCCTCCTAAAATTACTCTTCATAAGTTTTCCAAATATGTCTGCGAAATGTTAGGCATTGTTGGTTTGCTGATTGGTTCGATTTACTATGACAGATGCTATTCAGACATATTCCGACCGTGCACAATTTCTGCTAGTTTTCAGTGATTCTGTTTGCATCTTTTTCTCCTTTTAGTTTTTTCATTTAGGAGTTCGTACTTGCCACGAAACTGGGTAGATATTTTCTTCATGCTTCAATTAGTATATACAGGGCGTCAGGGGAGAGTGAAGAAAACATAAAATTCTACTCATCTCCTCACCATTTTTTCAGTTCTTATCGTCTGTATTGCTTCTTATAATCCATTCCTTGAATTTGGAATTTGGAATCATGCTACATGATCATCATATGCACCTTTTCTTAGATAGTTCTAGAGAATTTAATGTGGTAAGAATCCGTTCTGGCTTGAGCTCTAGTAGTTTATTTTCAATACCGGAGCTCTTTTACTTTGTTTAGGAAAAGAATCAATATCTTAACCAGAATTTTTTGTGTAAACCTTATGAACTTGTCTTCTGATTGTTCATTACTGTAGAATGCTGGTGGAGGTCTCTGTTCTGACAACACTAGTTCATCTCTTTATGAATCAACTGCGACTGCTGATCAATTGAAGGACCCTTTTTCAAGCGGGAAAGAATATTGTCCCAAGGTTTTGCTTTCGCTGCCTATTTTCTCTGTTTCAAAAATTTGGTATGTTTCATTTTCAAGCTTTTTTATTCACTTTTCTTCTATGTTTCTCACTGATTAGGCAAGGAAGCCCTACACAATCACAAAGCAAAGAGAAAGATGGAAGGAGGAAGAACATGAAAAGTTTATTGAAGCTCTGAAACTGTATGGTCGTGATTGGCGACAAATAGAAGGTATAGTTGAATAGAAAGAGCATAATGGGTTCCTAAACAAACAGAGGATATAGCCATCTTTATTGCATTTTTTTCTCATTCTCTTAATTGATTTTGCCTAACAGAGCATGTGGGCACGAAGACTGCAGTTCAGATTCGTAGCCATGCCCAGAAGTTCTTCTCCAAGGTCTAATGCTCTTATTCCAGTTCCCATTATCTACCATAATGTACATATTCCGGTTTATGAATGTAAGTAATTGTCAAGAATCACAAGGCGTGCAAACAATCCTTGAAGGATCAATGCTTGTCCTTTATAATCTTCCAACTTCTCATTGTTTCTCTTGTTGCCTTAGGTCATGCGTAATTCAAACGGGTGTACCGCAACTCTCGGAGGATGCATCGACATTCCTCCTCCACGTCCAAAACGAAAACCAGCGCATCCATATCCCCGTAAAGAAGTACCTGGTTCGCATAAGTTGTCCTCCATTTCAGAACAGACAAGGTCTTTG

mRNA sequence

CTGTTTATTGTTTTCGGTGTAATTAGTTTCTCAAGTTGTTGTGTTCATTTGTAGTGGGTTGTATGTTCTCTGTGTGACCAGGAGTTGTTTGATGTTCAGAATGAAGTTTGTTGTTTGTAATTTTGTTCTCTTGGTCTTCTTCGTGATCGAGTGATTAGTTGTTCTTTCTTTAGCTCTTGTACGGACGAAATCGTGCTTTGTTTTCCTGAAAGTCTACTGGCGCGAATCTGATTCTTTGTGGTTTTTGAGATTGAAGCCCTAGGAACTGTGATTCAGAGCCCGATCACTTAATTCTAGGGTTTTGAAGAATTTTATCTCGATAATGAGTTGAATTAGGACTGTTAACGCGCGTTGAAGTTGAACTAAGTCAGTTTGTTATCAAGCTGTTGAATTCAAACAGTCGAAAATACGACTGTTTAGGGATTGGTTATTCGGATTGTTGAAAATTCGTGAGGATTTATTGGTTACTGTAAATTCAACGGCAATCAACTAAGTGGAAACGAAAAGAAAAGGACACACAGGTGTTTGGCTCCGTGAAAGTAGAGGAAGATTTTGCACGGCGAGAACATCCATGGGTGCCGCAAACATGCAATCACAAAATGCTGGTGGAGGTCTCTGTTCTGACAACACTAGTTCATCTCTTTATGAATCAACTGCGACTGCTGATCAATTGAAGGACCCTTTTTCAAGCGGGAAAGAATATTGTCCCAAGAGCATGTGGGCACGAAGACTGCAGTTCAGATTCGTAGCCATGCCCAGAAGTTCTTCTCCAAGGTCTAATGCTCTTATTCCAGTTCCCATTATCTACCATAATGTACATATTCCGGTTTATGAATGTCATGCGTAATTCAAACGGGTGTACCGCAACTCTCGGAGGATGCATCGACATTCCTCCTCCACGTCCAAAACGAAAACCAGCGCATCCATATCCCCGTAAAGAAGTACCTGGTTCGCATAAGTTGTCCTCCATTTCAGAACAGACAAGGTCTTTG

Coding sequence (CDS)

ATGGGTGCCGCAAACATGCAATCACAAAATGCTGGTGGAGGTCTCTGTTCTGACAACACTAGTTCATCTCTTTATGAATCAACTGCGACTGCTGATCAATTGAAGGACCCTTTTTCAAGCGGGAAAGAATATTGTCCCAAGAGCATGTGGGCACGAAGACTGCAGTTCAGATTCGTAGCCATGCCCAGAAGTTCTTCTCCAAGGTCTAATGCTCTTATTCCAGTTCCCATTATCTACCATAATGTACATATTCCGGTTTATGAATGTCATGCGTAA

Protein sequence

MGAANMQSQNAGGGLCSDNTSSSLYESTATADQLKDPFSSGKEYCPKSMWARRLQFRFVAMPRSSSPRSNALIPVPIIYHNVHIPVYECHA

Homology

[Close]

BLAST of Carg18290 vs. NCBI nr
Match: KAG7032705.1 (hypothetical protein SDJN02_06755 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 186.0 bits (471), Expect = 1.4e-43
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MGAANMQSQNAGGGLCSDNTSSSLYESTATADQLKDPFSSGKEYCPKSMWARRLQFRFVA 60
          MGAANMQSQNAGGGLCSDNTSSSLYESTATADQLKDPFSSGKEYCPKSMWARRLQFRFVA
Sbjct: 1  MGAANMQSQNAGGGLCSDNTSSSLYESTATADQLKDPFSSGKEYCPKSMWARRLQFRFVA 60

Query: 61 MPRSSSPRSNALIPVPIIYHNVHIPVYECHA 92
          MPRSSSPRSNALIPVPIIYHNVHIPVYECHA
Sbjct: 61 MPRSSSPRSNALIPVPIIYHNVHIPVYECHA 91

[Close]

BLAST of Carg18290 vs. NCBI nr
Match: KAG6602012.1 (Protein REVEILLE 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.5 bits (236), Expect = 2.5e-16
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1  MGAANMQSQNAGGGLCSDNTSSSLYESTATADQLKDPFSSGKEYCPKS 49
          MGAANMQSQNAGGGLCSDNTSSSLYESTATADQLKDPFSSGKEYCPK+
Sbjct: 1  MGAANMQSQNAGGGLCSDNTSSSLYESTATADQLKDPFSSGKEYCPKA 48

[Close]

BLAST of Carg18290 vs. NCBI nr
Match: XP_023520270.1 (protein REVEILLE 1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 95.5 bits (236), Expect = 2.5e-16
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1  MGAANMQSQNAGGGLCSDNTSSSLYESTATADQLKDPFSSGKEYCPKS 49
          MGAANMQSQNAGGGLCSDNTSSSLYESTATADQLKDPFSSGKEYCPK+
Sbjct: 1  MGAANMQSQNAGGGLCSDNTSSSLYESTATADQLKDPFSSGKEYCPKA 48

[Close]

BLAST of Carg18290 vs. NCBI nr
Match: XP_022991133.1 (protein REVEILLE 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 95.5 bits (236), Expect = 2.5e-16
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1  MGAANMQSQNAGGGLCSDNTSSSLYESTATADQLKDPFSSGKEYCPKS 49
          MGAANMQSQNAGGGLCSDNTSSSLYESTATADQLKDPFSSGKEYCPK+
Sbjct: 1  MGAANMQSQNAGGGLCSDNTSSSLYESTATADQLKDPFSSGKEYCPKA 48

[Close]

BLAST of Carg18290 vs. NCBI nr
Match: XP_022961509.1 (protein REVEILLE 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 94.0 bits (232), Expect = 7.3e-16
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 1  MGAANMQSQNAGGGLCSDNTSSSLYESTATADQLKDPFSSGKEYCPKS 49
          MGAANMQSQN GGGLCSDNTSSSLYESTATADQLKDPFSSGKEYCPK+
Sbjct: 1  MGAANMQSQNTGGGLCSDNTSSSLYESTATADQLKDPFSSGKEYCPKA 48

[Close]

BLAST of Carg18290 vs. ExPASy TrEMBL
Match: A0A6J1JVA8 (protein REVEILLE 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487820 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.2e-16
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1  MGAANMQSQNAGGGLCSDNTSSSLYESTATADQLKDPFSSGKEYCPKS 49
          MGAANMQSQNAGGGLCSDNTSSSLYESTATADQLKDPFSSGKEYCPK+
Sbjct: 1  MGAANMQSQNAGGGLCSDNTSSSLYESTATADQLKDPFSSGKEYCPKA 48

[Close]

BLAST of Carg18290 vs. ExPASy TrEMBL
Match: A0A6J1HE94 (protein REVEILLE 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462061 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.5e-16
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 1  MGAANMQSQNAGGGLCSDNTSSSLYESTATADQLKDPFSSGKEYCPKS 49
          MGAANMQSQN GGGLCSDNTSSSLYESTATADQLKDPFSSGKEYCPK+
Sbjct: 1  MGAANMQSQNTGGGLCSDNTSSSLYESTATADQLKDPFSSGKEYCPKA 48

[Close]

BLAST of Carg18290 vs. ExPASy TrEMBL
Match: A0A0A0KPX5 (HTH myb-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G341040 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.2e-05
Identity = 28/47 (59.57%), Postives = 32/47 (68.09%), Query Frame = 0


Query: 1  MGAANMQSQNAGGGLCSDNTSSSLYESTATADQLKDPFSSGKEYCPK 48
          MGA NM+ QN GGGLCSDN SS++YE T T DQ        KE+CPK
Sbjct: 1  MGAVNMELQNTGGGLCSDNISSAVYEPTVTPDQYSSANVQLKEFCPK 47

[Close]

BLAST of Carg18290 vs. ExPASy TrEMBL
Match: A0A1S3CIJ4 (protein REVEILLE 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501368 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.3e-04
Identity = 27/47 (57.45%), Postives = 32/47 (68.09%), Query Frame = 0


Query: 1  MGAANMQSQNAGGGLCSDNTSSSLYESTATADQLKDPFSSGKEYCPK 48
          MGA NM+ QN GGGLCSD+ SS+ YE T + DQ   P    KE+CPK
Sbjct: 1  MGAVNMELQNTGGGLCSDSISSAGYEPTVSPDQHSSPNVQLKEFCPK 47

The following BLAST results are available for this feature:

BLAST of Carg18290 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032705.1	1.4e-43	100.00	hypothetical protein SDJN02_06755 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6602012.1	2.5e-16	97.92	Protein REVEILLE 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023520270.1	2.5e-16	97.92	protein REVEILLE 1-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022991133.1	2.5e-16	97.92	protein REVEILLE 1-like isoform X1 [Cucurbita maxima]	[more]
XP_022961509.1	7.3e-16	95.83	protein REVEILLE 1-like isoform X1 [Cucurbita moschata]	[more]

BLAST of Carg18290 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg18290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JVA8	1.2e-16	97.92	protein REVEILLE 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487820 P...	[more]
A0A6J1HE94	3.5e-16	95.83	protein REVEILLE 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462061...	[more]
A0A0A0KPX5	6.2e-05	59.57	HTH myb-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G34104...	[more]
A0A1S3CIJ4	5.3e-04	57.45	protein REVEILLE 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501368 PE=4 ...	[more]

BLAST of Carg18290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18290-RA	Carg18290-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding