Carg18286 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18286
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Pre-mRNA-splicing factor 38
Location	Carg_Chr04: 17877822 .. 17886231 (-)
RNA-Seq Expression	Carg18286
Synteny	Carg18286

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGTGTTTGTCTTCTCCAGACTATATCTTCAGGCTTGCTGTTAAAAGTATCAAATTTTCTTTTCACATTATTTTTTAATTACTGAATTTATAATTACTGCAGGTAGATGTCTAGTTGATTTATAATGGAGATTAAGACTTGTGGCAAGGCAATTGATTCTTTGCTGGAGAAGGTTTTATGTATGAACATTCTTTCTTCTGATTACTTTAAGGAGCTTTATCGTTTGAAGACATACCATGAAGTGGTCGATGAAATTTATAACCAAGTTGATCATGTGGAGCCATGGATGACTGGGAACTGCCGTGGTCCTTCAACAGCATTCTGCCTTCTGTACAAGTTTTTCACCATGAAACTTACTGTGAAGCAAATGCATGGGCTATTAAAGCACGAGGATTCTCCTTACATCAGAGCGGTAGGTAGAATCCCTTTGACCTTTAATTATTATTAAATAATAATGAATTGACATATTATATTGTTGAACTTTTATTTTTACTCCTTTTGTGAATTCCATATTATTTATTCATTTTCTTTTGTAAATATATTATGGACATTAAGACTGAAAGCTTGCAGTTTGTATATTTTTAAAAATTAATATTCTTCATGTTGCATGTACTTTTACAATCTTTGTTGGAACTTTGATTAATAGTGTACAAATTGGGTCAAATATTGATGTTGTAAATGGTTTACTATGATAATTTAGTTTACTTAACTGGACGTAGATTTGTCAGTGTATTCTTGAAGGTTTCTGTTTCTATTGCATGAAATTTTCTTGTGGGCATTTTAGAGAATAATTAATTCTTTCTTTTCATCATATTTACGTTACAAAGCATTTGGTAGTATGTAGTGATCCATGGATCTTTGAAGAATCTGCATTGCTCTATGTTTCTGCTTTTGTTATTTTATTTTTTTAAAAAAATAACTTTCTGTTGCTTTTCTTTTCTGATTGGTAGTTGTATATATGTGCTTCTAGATATTTAGTCCTCCCTCAACTTTGGGATGTTGAAGAAGCATCGTATTTTTGTTTGAATTTTGTTATTGTCACCTAGAATCGACTACTAATCTAAACTAGTATGCTTCTTCAAAATAGATTGGAGACTAGCTCTTGGTATATTTATGCGTTAGGCTGCTCCCTTCCTAAGTTCTACCTTCATTCCATCTCAATTCTGTTCTGCCAGAACAATATTGGTTCAGGATAATTAAATAAATAATTAAAAATAACATAAAGCTGCATATGTTGTATTTTGATTTAATTATGAACATTCTTTCTTCATAATTTGCTTTCTTATCTTATTATTATGATGCCCTTAGTTGTCCGATGTTTAAGAAATTTTGGGTGTAGCTGTATGATTTGGTTCTGCTACCATTTGACGTTATTTCTTTAATTAATTTTTCCAGATTGGATTCCTCTACTTGAGATATGTTGCAGATACGAAAACTCTGTGGAATTGGTTTGAACCTTATGTTAAAGATGAAGAGGTATATGATACATATGGGTGCTTGTTTTTTGTTTTTATTATTATGAGAACTGGTGCTAAAGATAACAGTTAGCATGCATGTGTTTGGCTTAGAATTTTCCTTAATGTGACTGTAAGTTGTTTTTTGTCGTTTGTATCGTTGTTTTCTGCTGCCTTCAATGTAATTGTATTGATAATTGATTAAGCACAGACCTATTTTCAATATTATAGAGAGGCCATAAATGCTTGTGAAGTATGGTAGACATTCAAATTTAAAATTACGGCTGTTGATGCTTACTAATCCAGTTGTTACTCTGTTCTTTTAATTGACTTTCTAGTGCAACCCCCCCTCCCTTTGGAGAATGCATTGTAACCTCTCCTTTTGTACTACAACGGATGCCTTGTCCCTTTGTATGTGAGGCCATTTTGGCTTGGTTGGTGCGTTTTGAATGAAGTTTCAACTGTTTCTTATCAAGTGAAGATGAATTTTGGCTTGGTTGGTACCAACACCCACCCTAGTTGAATTCTGATTTTGTTCTTTTGCGAGTGGAAGTGAAGATGAATACTGAGGCTCCTTTCTCTTACACTTTATTAGTTATACAAGTGGATCACTTCGTAAGAAAAAGTAAAGAGAAGGTGTGGGAAGACACAGGACCTGAGTTTTGTATGTTTTTCGTTGAGTTTGAGATCACTCTAACATGTAGAAGTAAAAGAATACTATTTTTCAAAGCTGGAATGGATGAGATTGCGAAAGTTCCTTTGAGGAGTCTGCAAACAACTTCTACCAAATGACTCCCTACGAGTTATGATCTAAAAAAATTCAAAACTAGGATCAAAGCTATAACCGCCCAAGCCCAAGCCCAAGCCCACCGCTAGGAGATATTGTCCTCTTTGTGCTTTCCCTTCCAAGCTTCCCTTCAAGGTTCATCCACCAGGGAGAGGTTTCACACCCTTATAAGGAATGTTTTGTTACCCTCTCCAACTGGTGTGGGATCAATCCACCCCCCTTGGGGGCCAGCGTCCTTGCTAGCACACTGCCCGGTGTCTGGTTTGAATACCATTTGTACAGCCCAAGCCCACTGCTAGCAGATATTGTCCTTTTTAGGCTTCCCCTTCCGGGCTTCCCTCAAGGTTTTAAAACACATCCACTAGGGAGAGTTTTCCACACCCTTGTAAGGAGTGCTCTATTCCTCTGTCCAACTAACGTGGGATCTCACAAAAGCTTTCCCCTAGTTGAAAAATGGTTAATGTCCTCCCACAAAGAACACATTTGTTGTTTTAGGCAATTACCAAGATGAGTTTTATTGATCTCGTATTGGCGTTGGTTCTTATAAGACGGAGACTAGACAAATATTTGATATCTTCTTGGGCACTTTTGATTTTGAACGAAGACTAGTGAATTATTTAGCAAGGACTATACAAATTTTGCAGAGCTCCAATTGCAAGTAAATAAATGAGAGGGTTAAACTTCCACCCTCCCTTTGAATTTATTTCTTGGACCAAAATCTTTAAGGAATTCATGAAGTTCAAGAAGATATGGCCACTTGCCATCTGGTTACCTCCCTTGTTCAGCCAACTCCTAAATCTTATATACCAAAGATGATTTTGAAATTTAATACTTTGTTGGAACATATGTTGCATGTTAGAGAGGTTTGAGATCCCATTTTTTGATCTGGCTACGTTTTTTTCACTATTACTAACAAAAGTGGCTCCAAGGGAGAAGTGATTCGCTTTCCGGTTCCTAAGTTTGGGGGGGCGACCATGAGATTGAAGTCCCATCCTTCCATATGAATTTTCTTTTGGTCTAGTTGTTACTATCTCAAAGGTGAGAGCTTATGTTCAAAGTGGACAATATCATATCATTGTGGAGGTTCGTTGTTCCTAACCATTGGTATCAGAGCCCAATTTTGGAATTCTGTTGATTACTTACATCGTGGTCTGTAAAGAGTTGCCTATGATGGAGCTGTAAACCCTCGTCACTTCCTGGTACTAGCTGTAGGTCATATGATAGATTCACTGTTATTGATTTGATTGATTATAATATGTGAACAATGCATTTGTAATTTAAAATAGAGAATAATACATGCTGAATTAGGAATTTAGAATATAGTAAATGGCAGATTAGGAACCGAAAGGAAAAATGATGTCCTAACTGGTAAGAGGATGGGGAAGGAGGCAGTCGAAGTGGCCTACAAGGGCACAAAAAGACCTAGCTTTAGAAGCCCCACCCTTGACACAGTTAGTAAATGCAAATATGAATTTAGTGACAGGGGTGGACAATAGGGTGCAAACCCAAATGCTCCAAGAATGTCAGACATTGCTGCAATGATGGAAGTGATGCAACCCCTAACACAAATGACTGGACAAATGGTTCAGCTGAACCTAAATCTTGTGCAAAATGTTGGGTAGGTAGCCCAACCCAACCGTGACAATTTCGACATGATACAGGAAAGCAAGGACACTTCAGGGACTTCAAATGATGGGATCTTTGAGTGTTTGATTGGACATCTAAAGACGCAGTGGTAGCTGAACTGTGGATGTCTTTATCGACGAGATTTTTAGGTGCATGAAGTGTTCGAAAGGACATAGGTCGGGTCGAGTTGTGCCTTTCATGTTGTGTAGTGATGCTTAACTATGATGGCAATTAGCCTCCAAAGTGATTGTTGCGGGCGAAGATCACGTCAGTTTAGTTTAAAGAGGCATTCCTTTGGAAATACTTCAAATTGGTGGTGTGATACAAGAAACAATGAGAATTTTTGAGTATAGAGGAAGGAGATAGATCGATAGATGAGTATGAGCGTGTCTTGGTTGGGCTGGGCAAGGAGAATTTTTTAGTATAGAGCAAGTAGATGAGTATGAGAAAGGAGACACTTGAGAATCTCATCATTTGAAGTACTTGCTCTCTAATGTCGTGTTGACATTGCCCTGGTTGGACTAGGCCACTTGCCTAGCATTTTGCACTAAATTCGGGGTCGTTTGTGAGGATTGCATCACTCCTATCATTGTAGCAATGTTTGACCTTCCTGGAGCATTTTGGGTTTGCACCTTGTTGTCCAAAATGGGGTCCTTTTGTTACCTTGTAGGCTTTCTTCGACTACCTGTCATTCTTTGTCCTCTTTCCAGCCAGAAGATCATTTTTATTCTTAGTCTGCAATTTGTCATATAAATTCACAAGTGGATTTAACAAACATGCTTTATTCTCTATTTTAAATTACAAATGCATATCACTTCACTTATTATATTATAATTGTTGTCTAAACTGCCGTCTTTCTTATTATTTTTTTTTAGAGGATTATAGAAAAGGTAACTAAATCTAAATTAAATCTCTAGATATTGATACTAGGTCACTAAATCTAAATAATAATACCTAGGATACCAGGTAACTAAATCTAAATAAATCCAAGATAAATTGGGGAGGTCAACCACTTCCCTTATTTCCCTGAGATTACACAAATATCCTTCTGACACTCCCTTCCAGCTAAATATCCTTCGACACTCCGCCTAAGTTGAGTAATAGATATATTTTTCTCAACCCAAGGGGGAGTGACAATGAATGATATCTATTAGTAACTTGAAGGAGAGCGTCGAAGGATATTTGTGTGATCCCCAAAAGTAGTTGGTCTGCTTAATGTATCTGATTGGATTTATTTAGATTTAGTTACCTAATATTTTGTGATTATTTAGATTCATTGTTACCTAGTATCTAGGGTATTTAGATTATCTAATAATTTAGATTTATTTATCTTTCTCCTTTATAAAAGGGACATATTATTCTCTGACAACCATCTAATTTAGACGTGCAACAATAATCAATCAAAATAACTCAAACAGTGAATCATCATACATCATACGGCCTACAGCTAGGTTTATAGCTTGGTCATGGGCAACTCTCTATAGCTTGTAAGTAGTCACAACGTCTAAAAACTAAGCTATGATACCAACGGTTAGGGACAACGGATCTTCATATGAGTATGATATTGTCTACTTTATGTTCTTATTTCTTTGCTTTTGGTTCCCCATTTTAAAAAAGGTTATCTTGACTTCATTTGCATTTTAGTGCCGATGCCAGTATTTCTGAGACTCGTGTACCTTGGCTTTTTATCCATTTATGTGTACTTCTATGTTAACTTTATAGAAGAGCTTCATGTTCTTTTGTGTTGATTTACTTGAAGTTGTGGCATATTTGTGTTTCAGCCCTTGGATTCCTTCTATTTCCTCCCAAGTCAACGGGAGACTTTATTTAAGTTCCAAGTCTTCGGACCCTCTGTATAAAATTATTGCTTATCTATGCCAATTGTATCTTGGCACTTTTTTTTTAAGATACAGAAAGAGAGAAATAGATGGATTTTAAGGATAGGGATGGTGTGGGTTAAGTAGGAATTAGAAGTACCTACATATCGACTACCTGTCATGCACATACATTTCATTTTATGCCAAGTGTCAATGTCAGACATAGATACGTCTGGACACACTCAACACATGTCGACATACTATTTTACGTGTCTTATATACATATATATATTATATACATCCAATAATTTAAATTAAATGAGAGTAAATTGACTTTAACTAACTTGACTTTTTATGCATTTTAGTGGAGTATATTTACTCTTTCTATTCGCTCATTTGTTGATTTGTAATCTCTTTTTTCCCTTCCAATGAATAACAGATGAAAATAGACTTCTTCCTTACAAATCTATGATGTTAGCATTTTTTTTTTTTTTCATTTTTAATGGATTTATACAAACCTAAAGCTATAAAAAGCAGAAAAGGAACTAACAGACTGTGTTTCAGGAATTTTCACCAGAATCCCATGGACGAATGACTACAATGGGTGCTTATGTGCGTGATTTGCTCCTTGGACAGGTCAGGTTATATACCAACTTTTCCCTTCAAATATCATGTTGTTGAGTTATATTTTTCTTGTTTCTTTTTAACGTCTTTGCCTCAAAAACTTGATAAATTGTGTGTATATGTACAGTTGGTTTGTGAATCTTGTGACAACCTGCTGTTGACATTGCTCTATTATCTAACCATGGAATGAAAATGCTTCATTGTTGGAGCTTTTTTTTTTGTTGTTTTTGGGAACTGATATCCTGTATAAGCTCTGTGCACATTGCAGATCCCGGAGGTTACTCTGTCGGATTGGAAGATTAAGAATTATATATATATATACAGTATAATAGAGTCGAAGACTCTCACTAAGAGATGAGGAGGTGCAAAAAAGATCAGGAAAAGAAGAACTACAGGATAACGTAACCTCCTCCCTCCCCCTTTCAACTTATTAGGAGATTCTTTTTGTCCATTAAAACATCTCGTTTATTATCGGTTTATCATGGTGACTCGATGCCATGTTCTCTGTTTTAGAAGGTACTTCTTAGCTTTGAAGGCATGCACGTGCAATGTGCCTTGGGTGTCTTGTTCAGTCAGTAGTATGGTCCATTTTTTTGTTTATTTTGATTTGAGGGGACCTTTGACCTAAAGTATTGGTTGTGTTACCTTTTACCTGTCAAAAGAGATACCTATTAGAGCTGCCCCTTCATGAACTTTCATAACTATTCATTCTTGTCACATTATTTCAAGGAATGTTCTTGAAATAATTGAATAAATTCGTTGTTTGGATTTAATCGTTTCTGTTATAGTGGTGAAAAGAGATGAATCAAGTGTATAAGATGGATAGAATGCGTGTAATTAGTGACTTCACTAAATTTGATGATTGCGGAGAGGAATGGAGACTAAATTTGGAGGTGGAAGTGATTTAAATCATGTGAAGAACACTCTCTCTGTTCACAACGAATGGAGACTAGAGGGAACAAACTAAAATGGTTTGTGTATTAATGCTTTATCAGTACAAAGCTGATTAGATCTTGATATCATATCTATATATAGGTTTGCATTTGGCTAGAGAGGATTTCACTTTTGGTTGGCAGTCTTTGTGTTTCAAATGTTCTATATTGGTATTAAGTGATTGTATTGTGTTAGCCATTGAATCCTTGTATTTGTAGTTTTGAAAATACCCTCATTTTGTTTTCCCATTGCAGTATTACTTCGATACCCTTTTCCCTCGTATTCCAGTTTCTGTCTTGCGGCAAGTTGCAGCTAATCTCGAAAAGTTGAAGCTTCCCAGCAAACATTCTGGTGTGACAGGGGAAACCCATCGAATAGGGTCTGAAGATACCGCACGGCGGCCACCTTCTGTAAAAGCGTCGCTTTCAGTTTCCTTTGGACAACGAGCCCCACATCGTGCCTCAACTAGGGACTCATCCCCAGTTCGTTGTACACTACCACCATCAGTTAGTGACAGAGATAACAGGGATGATCTACAAAGATCTCCAAGCAGTCGCCATCCTGATAACGGGGAGAGGAGCAGGGATAGAGATCATGACAGGGAGAGGAGCTCGGATAGAGATCACGGTAGGAAGATGAGCAAGGATAGAGACCACAACAGGGATAGTAGGAGAAAGGATAGGGACAGAGATCGTGATCGAGACAGAGAGAGGTCTAGAAATCGGGAGAGGGATAGAGATAGAGATAGAGATAGAGAAAGAGAGAAAGGTAGGGGTAGAGATAGGGAGAGGGAGCGAGACAGAGACAGAGAACGAAGTTATGATTATGATCGGAGGACTCATCATGCTGATAGTAGAAGGGACTACAAAAGGAGTAGTCGTGATAGTGTCGCCCGGCATTACCGAAGGAGTCGTAGCCGAAGTAGGAGCAGGAGCAGGAGCAGGAGCAGAAGTCAAAGTTTACAAACAGGGAATGATGGCTACCACAAGCGAGAGGCAAGTCCTGTAAGAGGTGGGACTACAGAGAAGACGTCTATGAACCTGGCAAAACTCAAAGATATTTATGGCGATGTGAGGGAGGAGAAAGGGGATTTGAGCAAAGAAAGGTTTAATAATAGAAGGGATAGCAGTGGTGAAGAGGTGATTAGATTGGGAGGTTCCTGGAAATAG

mRNA sequence

TTGTGTTTGTCTTCTCCAGACTATATCTTCAGGCTTGCTGTTAAAAGTATCAAATTTTCTTTTCACATTATTTTTTAATTACTGAATTTATAATTACTGCAGGTAGATGTCTAGTTGATTTATAATGGAGATTAAGACTTGTGGCAAGGCAATTGATTCTTTGCTGGAGAAGGTTTTATGTATGAACATTCTTTCTTCTGATTACTTTAAGGAGCTTTATCGTTTGAAGACATACCATGAAGTGGTCGATGAAATTTATAACCAAGTTGATCATGTGGAGCCATGGATGACTGGGAACTGCCGTGGTCCTTCAACAGCATTCTGCCTTCTGTACAAGTTTTTCACCATGAAACTTACTGTGAAGCAAATGCATGGGCTATTAAAGCACGAGGATTCTCCTTACATCAGAGCGATTGGATTCCTCTACTTGAGATATGTTGCAGATACGAAAACTCTGTGGAATTGGTTTGAACCTTATGTTAAAGATGAAGAGGAATTTTCACCAGAATCCCATGGACGAATGACTACAATGGGTGCTTATGTGCGTGATTTGCTCCTTGGACAGTATTACTTCGATACCCTTTTCCCTCGTATTCCAGTTTCTGTCTTGCGGCAAGTTGCAGCTAATCTCGAAAAGTTGAAGCTTCCCAGCAAACATTCTGGTGTGACAGGGGAAACCCATCGAATAGGGTCTGAAGATACCGCACGGCGGCCACCTTCTGTAAAAGCGTCGCTTTCAGTTTCCTTTGGACAACGAGCCCCACATCGTGCCTCAACTAGGGACTCATCCCCAGTTCGTTGTACACTACCACCATCAGTTAGTGACAGAGATAACAGGGATGATCTACAAAGATCTCCAAGCAGTCGCCATCCTGATAACGGGGAGAGGAGCAGGGATAGAGATCATGACAGGGAGAGGAGCTCGGATAGAGATCACGGTAGGAAGATGAGCAAGGATAGAGACCACAACAGGGATAGTAGGAGAAAGGATAGGGACAGAGATCGTGATCGAGACAGAGAGAGGTCTAGAAATCGGGAGAGGGATAGAGATAGAGATAGAGATAGAGAAAGAGAGAAAGGTAGGGGTAGAGATAGGGAGAGGGAGCGAGACAGAGACAGAGAACGAAGTTATGATTATGATCGGAGGACTCATCATGCTGATAGTAGAAGGGACTACAAAAGGAGTAGTCGTGATAGTGTCGCCCGGCATTACCGAAGGAGTCGTAGCCGAAGTAGGAGCAGGAGCAGGAGCAGGAGCAGAAGTCAAAGTTTACAAACAGGGAATGATGGCTACCACAAGCGAGAGGCAAGTCCTGTAAGAGGTGGGACTACAGAGAAGACGTCTATGAACCTGGCAAAACTCAAAGATATTTATGGCGATGTGAGGGAGGAGAAAGGGGATTTGAGCAAAGAAAGGTTTAATAATAGAAGGGATAGCAGTGGTGAAGAGGTGATTAGATTGGGAGGTTCCTGGAAATAG

Coding sequence (CDS)

ATGGAGATTAAGACTTGTGGCAAGGCAATTGATTCTTTGCTGGAGAAGGTTTTATGTATGAACATTCTTTCTTCTGATTACTTTAAGGAGCTTTATCGTTTGAAGACATACCATGAAGTGGTCGATGAAATTTATAACCAAGTTGATCATGTGGAGCCATGGATGACTGGGAACTGCCGTGGTCCTTCAACAGCATTCTGCCTTCTGTACAAGTTTTTCACCATGAAACTTACTGTGAAGCAAATGCATGGGCTATTAAAGCACGAGGATTCTCCTTACATCAGAGCGATTGGATTCCTCTACTTGAGATATGTTGCAGATACGAAAACTCTGTGGAATTGGTTTGAACCTTATGTTAAAGATGAAGAGGAATTTTCACCAGAATCCCATGGACGAATGACTACAATGGGTGCTTATGTGCGTGATTTGCTCCTTGGACAGTATTACTTCGATACCCTTTTCCCTCGTATTCCAGTTTCTGTCTTGCGGCAAGTTGCAGCTAATCTCGAAAAGTTGAAGCTTCCCAGCAAACATTCTGGTGTGACAGGGGAAACCCATCGAATAGGGTCTGAAGATACCGCACGGCGGCCACCTTCTGTAAAAGCGTCGCTTTCAGTTTCCTTTGGACAACGAGCCCCACATCGTGCCTCAACTAGGGACTCATCCCCAGTTCGTTGTACACTACCACCATCAGTTAGTGACAGAGATAACAGGGATGATCTACAAAGATCTCCAAGCAGTCGCCATCCTGATAACGGGGAGAGGAGCAGGGATAGAGATCATGACAGGGAGAGGAGCTCGGATAGAGATCACGGTAGGAAGATGAGCAAGGATAGAGACCACAACAGGGATAGTAGGAGAAAGGATAGGGACAGAGATCGTGATCGAGACAGAGAGAGGTCTAGAAATCGGGAGAGGGATAGAGATAGAGATAGAGATAGAGAAAGAGAGAAAGGTAGGGGTAGAGATAGGGAGAGGGAGCGAGACAGAGACAGAGAACGAAGTTATGATTATGATCGGAGGACTCATCATGCTGATAGTAGAAGGGACTACAAAAGGAGTAGTCGTGATAGTGTCGCCCGGCATTACCGAAGGAGTCGTAGCCGAAGTAGGAGCAGGAGCAGGAGCAGGAGCAGAAGTCAAAGTTTACAAACAGGGAATGATGGCTACCACAAGCGAGAGGCAAGTCCTGTAAGAGGTGGGACTACAGAGAAGACGTCTATGAACCTGGCAAAACTCAAAGATATTTATGGCGATGTGAGGGAGGAGAAAGGGGATTTGAGCAAAGAAAGGTTTAATAATAGAAGGGATAGCAGTGGTGAAGAGGTGATTAGATTGGGAGGTTCCTGGAAATAG

Protein sequence

MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVKDEEEFSPESHGRMTTMGAYVRDLLLGQYYFDTLFPRIPVSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDNRDDLQRSPSSRHPDNGERSRDRDHDRERSSDRDHGRKMSKDRDHNRDSRRKDRDRDRDRDRERSRNRERDRDRDRDREREKGRGRDRERERDRDRERSYDYDRRTHHADSRRDYKRSSRDSVARHYRRSRSRSRSRSRSRSRSQSLQTGNDGYHKREASPVRGGTTEKTSMNLAKLKDIYGDVREEKGDLSKERFNNRRDSSGEEVIRLGGSWK

Homology

[Close]

BLAST of Carg18286 vs. NCBI nr
Match: KAG7032708.1 (Pre-mRNA splicing factor SR-like 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 848.2 bits (2190), Expect = 3.3e-242
Identity = 451/451 (100.00%), Postives = 451/451 (100.00%), Query Frame = 0


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120

Query: 121 DEEEFSPESHGRMTTMGAYVRDLLLGQYYFDTLFPRIPVSVLRQVAANLEKLKLPSKHSG 180
           DEEEFSPESHGRMTTMGAYVRDLLLGQYYFDTLFPRIPVSVLRQVAANLEKLKLPSKHSG
Sbjct: 121 DEEEFSPESHGRMTTMGAYVRDLLLGQYYFDTLFPRIPVSVLRQVAANLEKLKLPSKHSG 180

Query: 181 VTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDNRDD 240
           VTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDNRDD
Sbjct: 181 VTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDNRDD 240

Query: 241 LQRSPSSRHPDNGERSRDRDHDRERSSDRDHGRKMSKDRDHNRDSRRKDRDRDRDRDRER 300
           LQRSPSSRHPDNGERSRDRDHDRERSSDRDHGRKMSKDRDHNRDSRRKDRDRDRDRDRER
Sbjct: 241 LQRSPSSRHPDNGERSRDRDHDRERSSDRDHGRKMSKDRDHNRDSRRKDRDRDRDRDRER 300

Query: 301 SRNRERDRDRDRDREREKGRGRDRERERDRDRERSYDYDRRTHHADSRRDYKRSSRDSVA 360
           SRNRERDRDRDRDREREKGRGRDRERERDRDRERSYDYDRRTHHADSRRDYKRSSRDSVA
Sbjct: 301 SRNRERDRDRDRDREREKGRGRDRERERDRDRERSYDYDRRTHHADSRRDYKRSSRDSVA 360

Query: 361 RHYRRSRSRSRSRSRSRSRSQSLQTGNDGYHKREASPVRGGTTEKTSMNLAKLKDIYGDV 420
           RHYRRSRSRSRSRSRSRSRSQSLQTGNDGYHKREASPVRGGTTEKTSMNLAKLKDIYGDV
Sbjct: 361 RHYRRSRSRSRSRSRSRSRSQSLQTGNDGYHKREASPVRGGTTEKTSMNLAKLKDIYGDV 420

Query: 421 REEKGDLSKERFNNRRDSSGEEVIRLGGSWK 452
           REEKGDLSKERFNNRRDSSGEEVIRLGGSWK
Sbjct: 421 REEKGDLSKERFNNRRDSSGEEVIRLGGSWK 451

[Close]

BLAST of Carg18286 vs. NCBI nr
Match: XP_022955756.1 (pre-mRNA splicing factor SR-like 1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 804.7 bits (2077), Expect = 4.1e-229
Identity = 430/451 (95.34%), Postives = 440/451 (97.56%), Query Frame = 0


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120

Query: 121 DEEEFSPESHGRMTTMGAYVRDLLLGQYYFDTLFPRIPVSVLRQVAANLEKLKLPSKHSG 180
           DEEEFSPESHGRMTTMGAYVRDLLLGQYYFDTLFPRIPVSVLRQVAANLEKLKLPSKHSG
Sbjct: 121 DEEEFSPESHGRMTTMGAYVRDLLLGQYYFDTLFPRIPVSVLRQVAANLEKLKLPSKHSG 180

Query: 181 VTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDNRDD 240
           VTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDNRDD
Sbjct: 181 VTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDNRDD 240

Query: 241 LQRSPSSRHPDNGERSRDRDHDRERSSDRDHGRKMSKDRDHNRDSRRKDRDRDRDRDRER 300
           LQRSPSSRHPDNGERSRDRDHDRERSSDRDHGRK S+DRDHNRDSRRKDRDRDRDRDRER
Sbjct: 241 LQRSPSSRHPDNGERSRDRDHDRERSSDRDHGRKRSRDRDHNRDSRRKDRDRDRDRDRER 300

Query: 301 SRNRERDRDRDRDREREKGRGRDRERERDRDRERSYDYDRRTHHADSRRDYKRSSRDSVA 360
            RNRERDRDRD +RE+ +GR  +RER+RDRDRERSYDYDRRTH+ADSRRDYKRSSRDSVA
Sbjct: 301 YRNRERDRDRDGEREKGRGRDMERERDRDRDRERSYDYDRRTHYADSRRDYKRSSRDSVA 360

Query: 361 RHYRRSRSRSRSRSRSRSRSQSLQTGNDGYHKREASPVRGGTTEKTSMNLAKLKDIYGDV 420
           +HY+    RS SRSRSRSRSQSLQTGNDGYHKREASPVRGGTTEKTSMNLAKLKDIYGDV
Sbjct: 361 QHYQ----RSFSRSRSRSRSQSLQTGNDGYHKREASPVRGGTTEKTSMNLAKLKDIYGDV 420

Query: 421 REEKGDLSKERFNNRRDSSGEEVIRLGGSWK 452
           REEKGDLSKERF+NRRDSSGEEVIRLGGSWK
Sbjct: 421 REEKGDLSKERFDNRRDSSGEEVIRLGGSWK 447

[Close]

BLAST of Carg18286 vs. NCBI nr
Match: XP_023548529.1 (pre-mRNA splicing factor SR-like 1 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 782.7 bits (2020), Expect = 1.7e-222
Identity = 426/451 (94.46%), Postives = 431/451 (95.57%), Query Frame = 0


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKT+HEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTFHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120

Query: 121 DEEEFSPESHGRMTTMGAYVRDLLLGQYYFDTLFPRIPVSVLRQVAANLEKLKLPSKHSG 180
           DEEEFSPESHGRMTTMG YVRDLLLGQYYFDTLFPRIPVSVLRQVAANLEKLKLPSKHSG
Sbjct: 121 DEEEFSPESHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVSVLRQVAANLEKLKLPSKHSG 180

Query: 181 VTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDNRDD 240
           VTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDN+DD
Sbjct: 181 VTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDNKDD 240

Query: 241 LQRSPSSRHPDNGERSRDRDHDRERSSDRDHGRKMSKDRDHNRDSRRKDRDRDRDRDRER 300
           LQRSPSSRHPDN ERSRDRDHDRERSSDRDHGRK S      RDSR KDRDRDRDRDRER
Sbjct: 241 LQRSPSSRHPDNRERSRDRDHDRERSSDRDHGRKRS------RDSRGKDRDRDRDRDRER 300

Query: 301 SRNRERDRDRDRDREREKGRGRDRERERDRDRERSYDYDRRTHHADSRRDYKRSSRDSVA 360
            RNRE  RDRDRDREREKGRGRDRERE  RDRERSYDYDRRTH+ADSRRDYKRSSRDSV 
Sbjct: 301 YRNRE--RDRDRDREREKGRGRDRERE--RDRERSYDYDRRTHYADSRRDYKRSSRDSVT 360

Query: 361 RHYRRSRSRSRSRSRSRSRSQSLQTGNDGYHKREASPVRGGTTEKTSMNLAKLKDIYGDV 420
           RHYRRSRSRSRSRSRS+S    LQTGNDGYHKREASPVRGGTTEKTS+NLAKLKDIYGDV
Sbjct: 361 RHYRRSRSRSRSRSRSQS---LLQTGNDGYHKREASPVRGGTTEKTSINLAKLKDIYGDV 420

Query: 421 REEKGDLSKERFNNRRDSSGEEVIRLGGSWK 452
           REEKGDLSKERFNNRRDSSGEEVIRLGGSWK
Sbjct: 421 REEKGDLSKERFNNRRDSSGEEVIRLGGSWK 438

[Close]

BLAST of Carg18286 vs. NCBI nr
Match: XP_038875168.1 (pre-mRNA splicing factor SR-like 1 isoform X1 [Benincasa hispida] >XP_038875169.1 pre-mRNA splicing factor SR-like 1 isoform X1 [Benincasa hispida])

HSP 1 Score: 688.7 bits (1776), Expect = 3.3e-194
Identity = 388/462 (83.98%), Postives = 411/462 (88.96%), Query Frame = 0


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGK IDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVAD KTLW WFEPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWTWFEPYVK 120

Query: 121 DEEEFSPESHGRMTTMGAYVRDLLLGQYYFDTLFPRIPVSVLRQVAANLEKLKLPSKHSG 180
           DEEEFSP SHGRMTTMG YVRDLLLGQYYFDTLFPRIPV VLRQV ANLEKLKLPSKHSG
Sbjct: 121 DEEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVANLEKLKLPSKHSG 180

Query: 181 VTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDNRDD 240
           VTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVR TLPPS +DRDN DD
Sbjct: 181 VTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPPSANDRDNSDD 240

Query: 241 LQRSPSSR------HPDNGERSRDRDHDRERSSDRDHGRKMSKDRDHNRDSRRKDRDRDR 300
           L+RSPSSR      HPD+ ERSRDRD+DRERS DRD+ R+ S+DRDH+RD   +DR RDR
Sbjct: 241 LRRSPSSRRSQSREHPDSRERSRDRDYDRERSRDRDYDRERSRDRDHDRD---RDRGRDR 300

Query: 301 DRDRERSRNRERDRDRDRDREREKGRGRDRERERDRDRERSYDYDRRTHHAD--SRRDYK 360
           DRDRE  R+RE+ RDR+RDR+RE+ R RDRER+R+RDRERSYDYDRRTH+ D  SRRD++
Sbjct: 301 DRDREYDRDREKYRDRERDRDRERERARDRERDRERDRERSYDYDRRTHYNDRESRRDFE 360

Query: 361 RSSRDSVARHYRRSRSRSRSRSRSRSRSQSLQTGNDGYHKREASPVRGGTTEKT---SMN 420
           RSSRD  +RHYRRSRSRSRSRSRSR    SLQTGN  +H+RE SP RGGTTEKT   S N
Sbjct: 361 RSSRDGGSRHYRRSRSRSRSRSRSR----SLQTGN-AHHEREPSPARGGTTEKTSSISSN 420

Query: 421 LAKLKDIYGDVREEKGDLSKERFNNRRDSSGEEVIRLGGSWK 452
           LAKLKDIYGDV E+KGD SKER  NRRDSSGEEVIRLGG WK
Sbjct: 421 LAKLKDIYGDVSEQKGDSSKERV-NRRDSSGEEVIRLGGYWK 453

[Close]

BLAST of Carg18286 vs. NCBI nr
Match: XP_022141497.1 (pre-mRNA splicing factor SR-like 1 isoform X1 [Momordica charantia] >XP_022141498.1 pre-mRNA splicing factor SR-like 1 isoform X1 [Momordica charantia])

HSP 1 Score: 679.9 bits (1753), Expect = 1.5e-191
Identity = 389/468 (83.12%), Postives = 411/468 (87.82%), Query Frame = 0


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGK IDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVAD KTLWNWFEPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWFEPYVK 120

Query: 121 DEEEFSPESHGRMTTMGAYVRDLLLGQYYFDTLFPRIPVSVLRQVAANLEKLKLPSKHSG 180
           DEEEFSP SHGRMTTMG YVRDLLLGQYYFDTLFPRIPV VLRQV ANLEKLKLPSKHSG
Sbjct: 121 DEEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVANLEKLKLPSKHSG 180

Query: 181 VTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDNRDD 240
           VTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVR TLPPS +D+DN DD
Sbjct: 181 VTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPPSANDKDNGDD 240

Query: 241 LQRSPSSR------HPDNGERSRDRDHDRERSSDRDHGRKMSKDRDHNRD-SRRKDRDRD 300
           ++RSPSSR      HPDNGERSRDRD+DRERS DRDH R  S+DRDH+RD  R +DRDRD
Sbjct: 241 VRRSPSSRRSQSREHPDNGERSRDRDYDRERSRDRDHDRDRSRDRDHDRDRGRDRDRDRD 300

Query: 301 RD----RDRERSRNRERDRDRDRDREREKGRGRDRERERDRDRERSYDYDRRTHHA--DS 360
           RD    RDRER R+R+RDRDRDRDRERE+ R R RERERDRDRERSYDYDRR+H+A  DS
Sbjct: 301 RDREKYRDRERDRDRDRDRDRDRDRERERERERVRERERDRDRERSYDYDRRSHYADRDS 360

Query: 361 RRDYKRSSRDSVARHYRRSRSRSRSRSRSRSRSQSLQTGNDGYHKREASPVRGGTTEKT- 420
           RRDY++SSRD  +RHYRRSRSRSRSRSRSR    SLQT N  +H+R  SPVR G T+KT 
Sbjct: 361 RRDYEKSSRDDGSRHYRRSRSRSRSRSRSR----SLQTVN-AHHERVPSPVRDGNTDKTS 420

Query: 421 --SMNLAKLKDIYGDVREEKGDLSKERFNNRRDSSGEEVIRL-GGSWK 452
             S NLAKLKDIYGDV ++KGD SKER   +RD SGEEV RL GGSWK
Sbjct: 421 NISSNLAKLKDIYGDVSDQKGDCSKERV-PKRDGSGEEVFRLGGGSWK 462

[Close]

BLAST of Carg18286 vs. ExPASy Swiss-Prot
Match: Q8RWB1 (Pre-mRNA splicing factor SR-like 1 OS=Arabidopsis thaliana OX=3702 GN=SRL1 PE=1 SV=1)

HSP 1 Score: 442.6 bits (1137), Expect = 5.4e-123
Identity = 278/452 (61.50%), Postives = 319/452 (70.58%), Query Frame = 0


Query: 2   EIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRG 61
           EI++ G+A +SLLEKVL MNILSSDYFKELY LKTYHEV+DEIYNQV+HVEPWM GNCRG
Sbjct: 3   EIQSNGRAYESLLEKVLSMNILSSDYFKELYGLKTYHEVIDEIYNQVNHVEPWMGGNCRG 62

Query: 62  PSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVKD 121
           PSTA+CLLYKFFTMKLTVKQMHGLLKH DSPYIRA+GFLYLRYVAD KTLW W+EPY+KD
Sbjct: 63  PSTAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAVGFLYLRYVADAKTLWTWYEPYIKD 122

Query: 122 EEEFSPESHGRMTTMGAYVRDLLLGQYYFDTLFPRIPVSVLRQVAANLEKLKLPSKHSGV 181
           +EEFSP S+GRMTTMG YVRDLLLG YYFDTLFPRIPV V+RQ+ +NLEK+ LP+K SG 
Sbjct: 123 DEEFSPGSNGRMTTMGVYVRDLLLGLYYFDTLFPRIPVPVMRQIVSNLEKMNLPTKPSGS 182

Query: 182 TGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDNRDDL 241
           TG+  R GSEDTARRPPSVKASLSVSFGQRAPHRASTR SSPVR   PP+  DR+  D++
Sbjct: 183 TGDMTR-GSEDTARRPPSVKASLSVSFGQRAPHRASTRGSSPVR-RPPPTGYDRNGGDEV 242

Query: 242 -QRSPSSRHPDNGERSRDRDHDRERSSDRDHGRKMSKDRDHNRDSRRKDRDRDRDRDRER 301
            QRSP         RS+ RD+                           DRD DR R+RER
Sbjct: 243 QQRSP--------RRSQSRDY-------------------------YSDRDSDRQRERER 302

Query: 302 SRNRERDRDRDRDREREKGRGRDRERERDRDRERSYDYDRRTHHADSRRDYKRSSRDSVA 361
            ++RER+R RDR RERE+  G DR   R        DYD R+     R DY+    D  +
Sbjct: 303 EKDRERERGRDRYRERERDYGNDRRSRR--------DYDSRSR----RNDYE----DDRS 362

Query: 362 RHYRRSRSRSRSRSRSRSRSQSLQTGNDGYHKREASPVRGGTTEKTSMNLAKLKDIYGDV 421
           RH RRSRSRSRSRSR      S+Q   +   KR++S          S NLAKLKD+YGD 
Sbjct: 363 RHDRRSRSRSRSRSR------SVQIEREPTPKRDSSNKEKSAVTVNS-NLAKLKDLYGDA 393

Query: 422 REEKGDLSKERFNNRRDSSGEEVIRLGG-SWK 452
             +K D   E F  R+DSS EEVI+LGG SW+
Sbjct: 423 SSQKRD---EGFGTRKDSSSEEVIKLGGSSWR 393

[Close]

BLAST of Carg18286 vs. ExPASy Swiss-Prot
Match: Q6AXY7 (Pre-mRNA-splicing factor 38B OS=Rattus norvegicus OX=10116 GN=Prpf38b PE=1 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 6.3e-47
Identity = 180/470 (38.30%), Postives = 247/470 (52.55%), Query Frame = 0


Query: 14  LEKVLCMNILSSDYFK-ELYRLKTYHEVVDEIYNQVDHVEPW---------MTGNCRG-- 73
           L  ++  NILSS YFK +LY LKTYHEVVDEIY +V HVEPW          TG C G  
Sbjct: 58  LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVR 117

Query: 74  -------PSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNW 133
                   STAFCLLYK FT+KLT KQ+ GL+ H DSPYIRA+GF+Y+RY      LW+W
Sbjct: 118 GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDW 177

Query: 134 FEPYVKDEEEFSPESHGR-MTTMGAYVRDLLLGQYYFDTLFPRIPVSVLRQVAANLEKLK 193
           FE ++ DEE+   ++ G  + T+G  +R  L    +F TLFPRIPV V + +   ++   
Sbjct: 178 FESFLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQIKTRP 237

Query: 194 LPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRCTLPPSVS 253
              K  G  G    I      RR  S + SLS    +R+P R+ +R  S  R     S  
Sbjct: 238 RKIKKDGKEG-VEEIDRHIERRRSRSPRRSLS---PRRSPRRSRSR--SHHRDGHGSSSF 297

Query: 254 DRD-----NRDDLQRSPSSRHPD-NGERSRDRDHDRERSSDRDHGRKMSKDRDHNRDSRR 313
           DR+      R  L+R    R  +    RS DR  DR RS  R+  R  S+ RD   D  R
Sbjct: 298 DRELEREKERQRLEREAKEREKERRRSRSLDRGLDRRRSRSRERHRSRSRSRDRKGD--R 357

Query: 314 KDRDRDRDRDRERSRNRERDRDRDRDREREKGRGRDRERERDR-------DRERSYDYDR 373
           +DRDR+R+++ ER R R+RD D+DR  +RE+ R R RER +++       +++   D + 
Sbjct: 358 RDRDREREKENERGRRRDRDYDKDRGNDRERDRERSRERSKEQRSRGEGEEKKHKEDKED 417

Query: 374 RTHHADSRRDYKRSSRDSVARHYRRSRSRSRS---RSRSRSRSQSLQTGNDGYHK----- 433
           R H  D +   K+ SR        RSRSRSR+   RSRSRS+ ++ +  N+   K     
Sbjct: 418 RRHRDDKKESKKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKDKASKHKNESKEKSNKRS 477

Query: 434 REASPVRGGTTEKTSMNLAKLKDIYGDVREEKGDLSKERFNNRRDSSGEE 443
           R  S  R G+ EK     +  ++     R    D S +R ++ +D S  +
Sbjct: 478 RSGSQGRTGSVEKRKREHSPSRE-KSRKRSRSQDRSHKRDHDSKDQSDRQ 518

[Close]

BLAST of Carg18286 vs. ExPASy Swiss-Prot
Match: Q5VTL8 (Pre-mRNA-splicing factor 38B OS=Homo sapiens OX=9606 GN=PRPF38B PE=1 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 5.4e-46
Identity = 181/468 (38.68%), Postives = 245/468 (52.35%), Query Frame = 0


Query: 14  LEKVLCMNILSSDYFK-ELYRLKTYHEVVDEIYNQVDHVEPW---------MTGNCRG-- 73
           L  ++  NILSS YFK +LY LKTYHEVVDEIY +V HVEPW          TG C G  
Sbjct: 58  LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVR 117

Query: 74  -------PSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNW 133
                   STAFCLLYK FT+KLT KQ+ GL+ H DSPYIRA+GF+Y+RY      LW+W
Sbjct: 118 GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDW 177

Query: 134 FEPYVKDEEEFSPESHGR-MTTMGAYVRDLLLGQYYFDTLFPRIPVSVLRQVAANLEKLK 193
           FE ++ DEE+   ++ G  + T+G  +R  L    +F TLFPRIPV V + +   ++   
Sbjct: 178 FESFLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQIKTRP 237

Query: 194 LPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRCTLPPSVS 253
              K  G  G    I      RR  S + SLS    +R+P R+ +R  S  R     S  
Sbjct: 238 RKIKKDGKEG-AEEIDRHVERRRSRSPRRSLS---PRRSPRRSRSR--SHHREGHGSSSF 297

Query: 254 DRD-----NRDDLQRSPSSRHPD-NGERSRDRDHDRERSSDRDHGRKMSKDRDHNRDSRR 313
           DR+      R  L+R    R  +    RS DR  +R RS  R+  R  S+ RD   D  R
Sbjct: 298 DRELEREKERQRLEREAKEREKERRRSRSIDRGLERRRSRSRERHRSRSRSRDRKGD--R 357

Query: 314 KDRDRDRDRDRERSRNRERDRDRDRDREREKGRGRDRERERDR-------DRERSYDYDR 373
           +DRDR+R+++ ER R R+RD D++R  EREK R R RER +++       +++   D D 
Sbjct: 358 RDRDREREKENERGRRRDRDYDKERGNEREKERERSRERSKEQRSRGEVEEKKHKEDKDD 417

Query: 374 RTHHADSR--RDYKRSSRDSVARHYRRSRSRSRS---RSRSRSRSQSLQTGNDGYHKREA 433
           R H  D R  +  K+ SR        RSRSRSR+   RSRSRS+ +S +  N+   K   
Sbjct: 418 RRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEKSNK 477

Query: 434 SPVRGGTTEKTSMNLAKLKD-IYGDVREEKGDLSKERFNNRRDSSGEE 443
               G      S+  +K ++      +  K   SKER + R  S  ++
Sbjct: 478 RSRSGSQGRTDSVEKSKKREHSPSKEKSRKRSRSKERSHKRDHSDSKD 517

[Close]

BLAST of Carg18286 vs. ExPASy Swiss-Prot
Match: Q80SY5 (Pre-mRNA-splicing factor 38B OS=Mus musculus OX=10090 GN=Prpf38b PE=1 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 2.0e-45
Identity = 179/471 (38.00%), Postives = 247/471 (52.44%), Query Frame = 0


Query: 14  LEKVLCMNILSSDYFK-ELYRLKTYHEVVDEIYNQVDHVEPW---------MTGNCRG-- 73
           L  ++  NILSS YFK +LY LKTYHEVVDEIY +V HVEPW          TG C G  
Sbjct: 59  LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVR 118

Query: 74  -------PSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNW 133
                   STAFCLLYK FT+KLT KQ+ GL+ H DSPYIRA+GF+Y+RY      LW+W
Sbjct: 119 GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDW 178

Query: 134 FEPYVKDEEEFSPESHGR-MTTMGAYVRDLLLGQYYFDTLFPRIPVSVLRQVAANLEKLK 193
           FE ++ DEE+   ++ G  + T+G  +R  L    +F TLFPRIPV V + +   ++   
Sbjct: 179 FESFLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQIKTRP 238

Query: 194 LPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRCTLPPSVS 253
              K  G  G    I      RR  S + SLS    +R+P R+ +R  S  R     S  
Sbjct: 239 RKIKKDGKEG-IEEIDRHVERRRSRSPRRSLS---PRRSPRRSRSR--SHHREGHGSSSF 298

Query: 254 DRDNRDDLQRSPSSRHPDNGERSRDRDHDRERSSDRDHGRKMSKDRDHNRD-SRRKDRDR 313
           DR    +L+R    +  +   + R+++  R RS DR   R+ S+ R+ +R  SR +DR  
Sbjct: 299 DR----ELEREKERQRLEREAKEREKERRRSRSIDRGLDRRRSRSRERHRSRSRSRDRKG 358

Query: 314 DRDRDRERSRNRERDRDRDRDREREKGRGRDRERERDRDRERS---------------YD 373
           DR RDR+R R +E +R R RDR+ +K RG DRER+R+R RERS                D
Sbjct: 359 DR-RDRDREREKENERGRRRDRDYDKERGSDRERDRERSRERSKEQRSRGDGEEKKHKED 418

Query: 374 YDRRTHHADSRRDYKRSSRDSVARHYRRSRSRSR-SRSRSRSRSQSLQTGNDGYHK---- 433
            + R H  D +   K+ SR        RSRSR+   RSRSRS+ +S +  N+   K    
Sbjct: 419 KEDRRHRDDKKESKKKHSRSRSRERKHRSRSRNAGKRSRSRSKDKSSRHKNESKEKANKR 478

Query: 434 -REASPVRGGTTEKTSMNLAKLKDIYGDVREEKGDLSKERFNNRRDSSGEE 443
            R  S  R G+ EK     +  ++     +  K   S++R + R  +  ++
Sbjct: 479 SRSGSQGRTGSVEKRKREHSPSRE-----KSRKRSRSQDRSHKREHNDSKD 513

[Close]

BLAST of Carg18286 vs. ExPASy Swiss-Prot
Match: Q6P7Y3 (Pre-mRNA-splicing factor 38B OS=Danio rerio OX=7955 GN=prpf38b PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 8.0e-42
Identity = 169/472 (35.81%), Postives = 242/472 (51.27%), Query Frame = 0


Query: 14  LEKVLCMNILSSDYFK-ELYRLKTYHEVVDEIYNQVDHVEPW---------MTGNCRG-- 73
           L  ++  N+LSS YFK +LY LKTYHEVVDEIY +V+HVEPW          TG C G  
Sbjct: 36  LNPMILTNVLSSPYFKVQLYELKTYHEVVDEIYFKVNHVEPWEKGSRKTAGQTGMCGGVR 95

Query: 74  -------PSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNW 133
                   STAFCLLYK FT+KLT KQ+ GL+ H DSP IRA+GF+Y+RY      L +W
Sbjct: 96  GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHSDSPDIRALGFMYIRYTQPPPDLVDW 155

Query: 134 FEPYVKDEEEFSPESHGR-MTTMGAYVRDLLLGQYYFDTLFPRIPVSVLRQVAANL---- 193
           ++ ++ DEEE   ++ G  + T+G  +R  L    +F TLFPRIPV V + +  ++    
Sbjct: 156 YDEFLDDEEELDVKAGGGCVMTVGEMLRSFLTKLEWFSTLFPRIPVPVQKAIDQHMKSRP 215

Query: 194 --------------EKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHR 253
                         E    P+  +G  G+  R     T RR PS + S + S   R+ HR
Sbjct: 216 RKPPQKDEQEEEEEEATAAPAADTGRHGDKRR---SRTPRRSPSPRKSQNRS-RSRSHHR 275

Query: 254 ASTRDSSPVRCTLPPSVSDRDNRDDLQRSPSSRHPDNGERSRDRDHDRERSSDRDHGRKM 313
                S              D   + +R    +  +  +R RDRD DRER  +RD  R+ 
Sbjct: 276 ERHGASF-------------DYELERERDRQRKEREGKDRDRDRDRDRERDRERDRDRRR 335

Query: 314 SKDRDHNRDSRRKDRDRDRDRDRERSRNR---ERDRDRDRDREREKGRGRDRERERDRDR 373
           S+  D N + RR+ R R+R R R  SR++    +DRD+DR+ E E+ R R ++RE  +DR
Sbjct: 336 SRTPDRNAE-RRRSRSRERRRSRSTSRDKRTERKDRDKDREAESERERSRKKDREHHKDR 395

Query: 374 ERSYDYDRRTHHADSR-RDYKRSSRDSVARHYRRSRSRSRSRSRSRSRSQSLQTGNDGYH 433
           ERS D   +    + R +D K   +    +  +RSRSRSR R     RS   ++ +    
Sbjct: 396 ERSKDKRSKGEGEERRHKDDKEEKKHREEKRSKRSRSRSRDRKHKAERSSKKRSRSGSRS 455

Query: 434 KREASPVRGGTTEKTSMNLAKLKDIYGDVREEKGDLSKERFNNRRDSSGEEV 444
           ++EA   +    E++          +   R+ K   SKER ++RR+SS E +
Sbjct: 456 RQEAGEEKNRKRERS----------HSKDRQHKRSRSKER-SHRRESSNERI 478

[Close]

BLAST of Carg18286 vs. ExPASy TrEMBL
Match: A0A6J1GUQ9 (Pre-mRNA-splicing factor 38 OS=Cucurbita moschata OX=3662 GN=LOC111457654 PE=3 SV=1)

HSP 1 Score: 804.7 bits (2077), Expect = 2.0e-229
Identity = 430/451 (95.34%), Postives = 440/451 (97.56%), Query Frame = 0


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120

Query: 121 DEEEFSPESHGRMTTMGAYVRDLLLGQYYFDTLFPRIPVSVLRQVAANLEKLKLPSKHSG 180
           DEEEFSPESHGRMTTMGAYVRDLLLGQYYFDTLFPRIPVSVLRQVAANLEKLKLPSKHSG
Sbjct: 121 DEEEFSPESHGRMTTMGAYVRDLLLGQYYFDTLFPRIPVSVLRQVAANLEKLKLPSKHSG 180

Query: 181 VTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDNRDD 240
           VTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDNRDD
Sbjct: 181 VTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDNRDD 240

Query: 241 LQRSPSSRHPDNGERSRDRDHDRERSSDRDHGRKMSKDRDHNRDSRRKDRDRDRDRDRER 300
           LQRSPSSRHPDNGERSRDRDHDRERSSDRDHGRK S+DRDHNRDSRRKDRDRDRDRDRER
Sbjct: 241 LQRSPSSRHPDNGERSRDRDHDRERSSDRDHGRKRSRDRDHNRDSRRKDRDRDRDRDRER 300

Query: 301 SRNRERDRDRDRDREREKGRGRDRERERDRDRERSYDYDRRTHHADSRRDYKRSSRDSVA 360
            RNRERDRDRD +RE+ +GR  +RER+RDRDRERSYDYDRRTH+ADSRRDYKRSSRDSVA
Sbjct: 301 YRNRERDRDRDGEREKGRGRDMERERDRDRDRERSYDYDRRTHYADSRRDYKRSSRDSVA 360

Query: 361 RHYRRSRSRSRSRSRSRSRSQSLQTGNDGYHKREASPVRGGTTEKTSMNLAKLKDIYGDV 420
           +HY+    RS SRSRSRSRSQSLQTGNDGYHKREASPVRGGTTEKTSMNLAKLKDIYGDV
Sbjct: 361 QHYQ----RSFSRSRSRSRSQSLQTGNDGYHKREASPVRGGTTEKTSMNLAKLKDIYGDV 420

Query: 421 REEKGDLSKERFNNRRDSSGEEVIRLGGSWK 452
           REEKGDLSKERF+NRRDSSGEEVIRLGGSWK
Sbjct: 421 REEKGDLSKERFDNRRDSSGEEVIRLGGSWK 447

[Close]

BLAST of Carg18286 vs. ExPASy TrEMBL
Match: A0A6J1CK04 (Pre-mRNA-splicing factor 38 OS=Momordica charantia OX=3673 GN=LOC111011867 PE=3 SV=1)

HSP 1 Score: 679.9 bits (1753), Expect = 7.4e-192
Identity = 389/468 (83.12%), Postives = 411/468 (87.82%), Query Frame = 0


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGK IDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVAD KTLWNWFEPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWFEPYVK 120

Query: 121 DEEEFSPESHGRMTTMGAYVRDLLLGQYYFDTLFPRIPVSVLRQVAANLEKLKLPSKHSG 180
           DEEEFSP SHGRMTTMG YVRDLLLGQYYFDTLFPRIPV VLRQV ANLEKLKLPSKHSG
Sbjct: 121 DEEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVANLEKLKLPSKHSG 180

Query: 181 VTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDNRDD 240
           VTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVR TLPPS +D+DN DD
Sbjct: 181 VTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPPSANDKDNGDD 240

Query: 241 LQRSPSSR------HPDNGERSRDRDHDRERSSDRDHGRKMSKDRDHNRD-SRRKDRDRD 300
           ++RSPSSR      HPDNGERSRDRD+DRERS DRDH R  S+DRDH+RD  R +DRDRD
Sbjct: 241 VRRSPSSRRSQSREHPDNGERSRDRDYDRERSRDRDHDRDRSRDRDHDRDRGRDRDRDRD 300

Query: 301 RD----RDRERSRNRERDRDRDRDREREKGRGRDRERERDRDRERSYDYDRRTHHA--DS 360
           RD    RDRER R+R+RDRDRDRDRERE+ R R RERERDRDRERSYDYDRR+H+A  DS
Sbjct: 301 RDREKYRDRERDRDRDRDRDRDRDRERERERERVRERERDRDRERSYDYDRRSHYADRDS 360

Query: 361 RRDYKRSSRDSVARHYRRSRSRSRSRSRSRSRSQSLQTGNDGYHKREASPVRGGTTEKT- 420
           RRDY++SSRD  +RHYRRSRSRSRSRSRSR    SLQT N  +H+R  SPVR G T+KT 
Sbjct: 361 RRDYEKSSRDDGSRHYRRSRSRSRSRSRSR----SLQTVN-AHHERVPSPVRDGNTDKTS 420

Query: 421 --SMNLAKLKDIYGDVREEKGDLSKERFNNRRDSSGEEVIRL-GGSWK 452
             S NLAKLKDIYGDV ++KGD SKER   +RD SGEEV RL GGSWK
Sbjct: 421 NISSNLAKLKDIYGDVSDQKGDCSKERV-PKRDGSGEEVFRLGGGSWK 462

[Close]

BLAST of Carg18286 vs. ExPASy TrEMBL
Match: A0A6J1JTS5 (Pre-mRNA-splicing factor 38 OS=Cucurbita maxima OX=3661 GN=LOC111489677 PE=3 SV=1)

HSP 1 Score: 662.9 bits (1709), Expect = 9.4e-187
Identity = 379/466 (81.33%), Postives = 408/466 (87.55%), Query Frame = 0


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGK IDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVAD KTLWNW EPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWVEPYVK 120

Query: 121 DEEEFSPESHGRMTTMGAYVRDLLLGQYYFDTLFPRIPVSVLRQVAANLEKLKLPSKHSG 180
           DEEEFSP SHGRMTTMG YVRDLLLGQYYFDTLFPRIPV VLRQV ANLEKLKLPSKHSG
Sbjct: 121 DEEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVANLEKLKLPSKHSG 180

Query: 181 VTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDNRDD 240
           VTGETHR+GSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVR TLP S  DRDN DD
Sbjct: 181 VTGETHRLGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPTSAIDRDNSDD 240

Query: 241 LQRSPSSR------HPDNGERSRDRDHDRERSSDRDHGRKMSKDRDHNRDSRRKDRDRDR 300
           L+RSPSSR      HPD  ERSRDRD+DRERS DRD+ R+ S+DR+++RD R +DRDR+R
Sbjct: 241 LRRSPSSRRSQSREHPDTRERSRDRDYDRERSRDRDYDRERSRDREYDRD-RGRDRDRER 300

Query: 301 DRDRERSRNRERDRDRDRDREREKGRGRDRERERDRDRERSYDYDRRTHHAD--SRRDYK 360
           + DR+R + R+R+RDR+RDREREK   RDRER+R+RDRERSYDYDRRTH+ D   RRD++
Sbjct: 301 EHDRDREKYRDRERDRERDREREK--ARDRERDRERDRERSYDYDRRTHYTDREGRRDFE 360

Query: 361 RSSRDSVARHYRRSRSRSRSRSRSRSRSQSLQTGND--GYHKREASPVRGGTTEKTSM-- 420
           RSSRD   RHYRRSRSRSRSRS SR    SLQTG +  G+H+RE SP RG T+EKTS+  
Sbjct: 361 RSSRDGGTRHYRRSRSRSRSRSSSR----SLQTGVNAHGHHEREPSPARGRTSEKTSIIS 420

Query: 421 -NLAKLKDIYGDVREEK--GDLSKERFNNRRDSSGEEVIRLGGSWK 452
            NLAKLKD+YGDV E+K  GD SKER  NRRDSSGEEVIRLGGSWK
Sbjct: 421 SNLAKLKDMYGDVSEQKGGGDPSKERI-NRRDSSGEEVIRLGGSWK 458

[Close]

BLAST of Carg18286 vs. ExPASy TrEMBL
Match: A0A5D3D5T6 (Pre-mRNA-splicing factor 38 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold418G00040 PE=3 SV=1)

HSP 1 Score: 659.1 bits (1699), Expect = 1.4e-185
Identity = 376/479 (78.50%), Postives = 408/479 (85.18%), Query Frame = 0


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGK IDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVAD KTLWNWFEPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWFEPYVK 120

Query: 121 DEEEFSPESHGRMTTMGAYVRDLLLGQYYFDTLFPRIPVSVLRQVAANLEKLKLPSKHSG 180
           D+EEFSP SHGRMTTMG YVRDLLLGQYYFDTLFPRIPV VLRQV +NLEKLKLPSKHSG
Sbjct: 121 DDEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVSNLEKLKLPSKHSG 180

Query: 181 VTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDNRDD 240
           VTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVR TLP SV+DRD  DD
Sbjct: 181 VTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSSVNDRDINDD 240

Query: 241 LQRSPSSR------HPDNGERSRDRDHDRERSSDRDHGRKMSKDRDHNRD---------- 300
           L+RSPS+R      HPD+ ERSRDR++DRERS DR++ R+ S+DRD++R+          
Sbjct: 241 LRRSPSNRRSQSREHPDSRERSRDREYDRERSRDREYDRERSRDRDYDRERSRDRDYDRE 300

Query: 301 -------SRRKDRDRDRDRDRERSRNRERDRDRDRDREREKGRGRDRERERDRDRERSYD 360
                   R +DR RDRDRDRE  R+RE+ RDR+RDR+RE+ + RDRER+R+RDRERSYD
Sbjct: 301 RSRDRDYDRDRDRGRDRDRDRELDRDREKYRDRERDRDREREKARDRERDRERDRERSYD 360

Query: 361 YDRRTHHAD--SRRDYKRSSRDSVARHYRRSRSRSRSRSRSRSRSQSLQTGNDGYHKREA 420
           YDRRTH++D  SRRD++RSSRD   RHYRRSRSRSRSRSR R    SLQT    +H+RE 
Sbjct: 361 YDRRTHYSDRESRRDFERSSRDGGTRHYRRSRSRSRSRSRGR----SLQT----HHEREQ 420

Query: 421 SPVRGGTTEKTSM---NLAKLKDIYGDVREEKGDLSKERFNNRRDSSGEEVIRLGGSWK 452
           SP RGGTTEK S+   NLAKLKDIYGDV E+KGD SK    NRRDSSGEEVIRLGGSWK
Sbjct: 421 SPARGGTTEKASVISSNLAKLKDIYGDVSEQKGDSSK---INRRDSSGEEVIRLGGSWK 468

[Close]

BLAST of Carg18286 vs. ExPASy TrEMBL
Match: A0A6J1FF63 (Pre-mRNA-splicing factor 38 OS=Cucurbita moschata OX=3662 GN=LOC111444923 PE=3 SV=1)

HSP 1 Score: 658.7 bits (1698), Expect = 1.8e-185
Identity = 374/469 (79.74%), Postives = 407/469 (86.78%), Query Frame = 0


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGK IDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVAD KTLWNW EPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWVEPYVK 120

Query: 121 DEEEFSPESHGRMTTMGAYVRDLLLGQYYFDTLFPRIPVSVLRQVAANLEKLKLPSKHSG 180
           DEEEFSP SHGRMTTMG YVRDLLLGQYYFDTLFPRIPV VLRQV ANLEKLKLPSKHSG
Sbjct: 121 DEEEFSPGSHGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVVANLEKLKLPSKHSG 180

Query: 181 VTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDNRDD 240
           VTGETHR+GSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVR TLP S  DRDN DD
Sbjct: 181 VTGETHRLGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPTSAIDRDNNDD 240

Query: 241 LQRSPSSR------HPDNGERSRDRDHDRERSSDRDHGRKMSKDRDHNRDSRRKDRDRDR 300
           L+RSPSSR      HPD  ERSRDRD+DRERS DRD+ R+ S+DR+++RD   +DRDR R
Sbjct: 241 LRRSPSSRRSQSREHPDTRERSRDRDYDRERSRDRDYDRERSRDREYDRD---RDRDRGR 300

Query: 301 DRDRERSRNRERDRDRDRDREREKGRGRDRERERDRDRERSYDYDRRTHHA--DSRRDYK 360
           DRDRE+  +R+R++ RDR+R+RE+ R R++ R+R+RDRERSYDYDRRTH+   D RRD++
Sbjct: 301 DRDREQEHDRDREKYRDRERDRERDREREKARDRERDRERSYDYDRRTHYTDRDGRRDFE 360

Query: 361 RSSRDSVARHYRRSRSRSRSRSRSRSRSQSLQTGND--GYHKREASPVRGGTTEKTSM-- 420
           RSSRD   RHYRRSRSRSRSRSRSR    SLQTG +  G+H+RE SP RG T+EKTS+  
Sbjct: 361 RSSRDGGTRHYRRSRSRSRSRSRSR----SLQTGVNAHGHHEREPSPARGRTSEKTSIIS 420

Query: 421 -NLAKLKDIYGDVREEK-----GDLSKERFNNRRDSSGEEVIRLGGSWK 452
            NLAKLKD+YGDV E+K     GD SKER  NRRDSSGEEVIRLGGSW+
Sbjct: 421 SNLAKLKDMYGDVSEQKGGGGGGDSSKERI-NRRDSSGEEVIRLGGSWR 461

[Close]

BLAST of Carg18286 vs. TAIR 10
Match: AT5G37370.1 (PRP38 family protein )

HSP 1 Score: 442.6 bits (1137), Expect = 3.8e-124
Identity = 278/452 (61.50%), Postives = 319/452 (70.58%), Query Frame = 0


Query: 2   EIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRG 61
           EI++ G+A +SLLEKVL MNILSSDYFKELY LKTYHEV+DEIYNQV+HVEPWM GNCRG
Sbjct: 3   EIQSNGRAYESLLEKVLSMNILSSDYFKELYGLKTYHEVIDEIYNQVNHVEPWMGGNCRG 62

Query: 62  PSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVKD 121
           PSTA+CLLYKFFTMKLTVKQMHGLLKH DSPYIRA+GFLYLRYVAD KTLW W+EPY+KD
Sbjct: 63  PSTAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAVGFLYLRYVADAKTLWTWYEPYIKD 122

Query: 122 EEEFSPESHGRMTTMGAYVRDLLLGQYYFDTLFPRIPVSVLRQVAANLEKLKLPSKHSGV 181
           +EEFSP S+GRMTTMG YVRDLLLG YYFDTLFPRIPV V+RQ+ +NLEK+ LP+K SG 
Sbjct: 123 DEEFSPGSNGRMTTMGVYVRDLLLGLYYFDTLFPRIPVPVMRQIVSNLEKMNLPTKPSGS 182

Query: 182 TGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDNRDDL 241
           TG+  R GSEDTARRPPSVKASLSVSFGQRAPHRASTR SSPVR   PP+  DR+  D++
Sbjct: 183 TGDMTR-GSEDTARRPPSVKASLSVSFGQRAPHRASTRGSSPVR-RPPPTGYDRNGGDEV 242

Query: 242 -QRSPSSRHPDNGERSRDRDHDRERSSDRDHGRKMSKDRDHNRDSRRKDRDRDRDRDRER 301
            QRSP         RS+ RD+                           DRD DR R+RER
Sbjct: 243 QQRSP--------RRSQSRDY-------------------------YSDRDSDRQRERER 302

Query: 302 SRNRERDRDRDRDREREKGRGRDRERERDRDRERSYDYDRRTHHADSRRDYKRSSRDSVA 361
            ++RER+R RDR RERE+  G DR   R        DYD R+     R DY+    D  +
Sbjct: 303 EKDRERERGRDRYRERERDYGNDRRSRR--------DYDSRSR----RNDYE----DDRS 362

Query: 362 RHYRRSRSRSRSRSRSRSRSQSLQTGNDGYHKREASPVRGGTTEKTSMNLAKLKDIYGDV 421
           RH RRSRSRSRSRSR      S+Q   +   KR++S          S NLAKLKD+YGD 
Sbjct: 363 RHDRRSRSRSRSRSR------SVQIEREPTPKRDSSNKEKSAVTVNS-NLAKLKDLYGDA 393

Query: 422 REEKGDLSKERFNNRRDSSGEEVIRLGG-SWK 452
             +K D   E F  R+DSS EEVI+LGG SW+
Sbjct: 423 SSQKRD---EGFGTRKDSSSEEVIKLGGSSWR 393

[Close]

BLAST of Carg18286 vs. TAIR 10
Match: AT5G37370.2 (PRP38 family protein )

HSP 1 Score: 422.9 bits (1086), Expect = 3.2e-118
Identity = 271/452 (59.96%), Postives = 312/452 (69.03%), Query Frame = 0


Query: 2   EIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRG 61
           EI++ G+A +SLLEKVL MNILSSDYFKELY LKTYHEV+DEIYNQV+HVEPWM GNCRG
Sbjct: 3   EIQSNGRAYESLLEKVLSMNILSSDYFKELYGLKTYHEVIDEIYNQVNHVEPWMGGNCRG 62

Query: 62  PSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVKD 121
           PSTA+CLLYKFFTMKLTVKQMHGLLKH DSPYIRA+GFLYLRYVAD KTLW W+EPY+KD
Sbjct: 63  PSTAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAVGFLYLRYVADAKTLWTWYEPYIKD 122

Query: 122 EEEFSPESHGRMTTMGAYVRDLLLGQYYFDTLFPRIPVSVLRQVAANLEKLKLPSKHSGV 181
           +EEFSP S+GRMTTMG Y        YYFDTLFPRIPV V+RQ+ +NLEK+ LP+K SG 
Sbjct: 123 DEEFSPGSNGRMTTMGVY--------YYFDTLFPRIPVPVMRQIVSNLEKMNLPTKPSGS 182

Query: 182 TGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDNRDDL 241
           TG+  R GSEDTARRPPSVKASLSVSFGQRAPHRASTR SSPVR   PP+  DR+  D++
Sbjct: 183 TGDMTR-GSEDTARRPPSVKASLSVSFGQRAPHRASTRGSSPVR-RPPPTGYDRNGGDEV 242

Query: 242 -QRSPSSRHPDNGERSRDRDHDRERSSDRDHGRKMSKDRDHNRDSRRKDRDRDRDRDRER 301
            QRSP         RS+ RD+                           DRD DR R+RER
Sbjct: 243 QQRSP--------RRSQSRDY-------------------------YSDRDSDRQRERER 302

Query: 302 SRNRERDRDRDRDREREKGRGRDRERERDRDRERSYDYDRRTHHADSRRDYKRSSRDSVA 361
            ++RER+R RDR RERE+  G DR   R        DYD R+     R DY+    D  +
Sbjct: 303 EKDRERERGRDRYRERERDYGNDRRSRR--------DYDSRSR----RNDYE----DDRS 362

Query: 362 RHYRRSRSRSRSRSRSRSRSQSLQTGNDGYHKREASPVRGGTTEKTSMNLAKLKDIYGDV 421
           RH RRSRSRSRSRSR      S+Q   +   KR++S          S NLAKLKD+YGD 
Sbjct: 363 RHDRRSRSRSRSRSR------SVQIEREPTPKRDSSNKEKSAVTVNS-NLAKLKDLYGDA 385

Query: 422 REEKGDLSKERFNNRRDSSGEEVIRLGG-SWK 452
             +K D   E F  R+DSS EEVI+LGG SW+
Sbjct: 423 SSQKRD---EGFGTRKDSSSEEVIKLGGSSWR 385

[Close]

BLAST of Carg18286 vs. TAIR 10
Match: AT5G37370.4 (PRP38 family protein )

HSP 1 Score: 354.4 bits (908), Expect = 1.4e-97
Identity = 235/399 (58.90%), Postives = 270/399 (67.67%), Query Frame = 0


Query: 55  MTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNW 114
           M GNCRGPSTA+CLLYKFFTMKLTVKQMHGLLKH DSPYIRA+GFLYLRYVAD KTLW W
Sbjct: 1   MGGNCRGPSTAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAVGFLYLRYVADAKTLWTW 60

Query: 115 FEPYVKDEEEFSPESHGRMTTMGAYVRDLLLGQYYFDTLFPRIPVSVLRQVAANLEKLKL 174
           +EPY+KD+EEFSP S+GRMTTMG YVRDLLLG YYFDTLFPRIPV V+RQ+ +NLEK+ L
Sbjct: 61  YEPYIKDDEEFSPGSNGRMTTMGVYVRDLLLGLYYFDTLFPRIPVPVMRQIVSNLEKMNL 120

Query: 175 PSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRCTLPPSVSD 234
           P+K SG TG+  R GSEDTARRPPSVKASLSVSFGQRAPHRASTR SSPVR   PP+  D
Sbjct: 121 PTKPSGSTGDMTR-GSEDTARRPPSVKASLSVSFGQRAPHRASTRGSSPVR-RPPPTGYD 180

Query: 235 RDNRDDL-QRSPSSRHPDNGERSRDRDHDRERSSDRDHGRKMSKDRDHNRDSRRKDRDRD 294
           R+  D++ QRSP         RS+ RD+                           DRD D
Sbjct: 181 RNGGDEVQQRSP--------RRSQSRDY-------------------------YSDRDSD 240

Query: 295 RDRDRERSRNRERDRDRDRDREREKGRGRDRERERDRDRERSYDYDRRTHHADSRRDYKR 354
           R R+RER ++RER+R RDR RERE+  G DR   R        DYD R+     R DY+ 
Sbjct: 241 RQREREREKDRERERGRDRYRERERDYGNDRRSRR--------DYDSRSR----RNDYE- 300

Query: 355 SSRDSVARHYRRSRSRSRSRSRSRSRSQSLQTGNDGYHKREASPVRGGTTEKTSMNLAKL 414
              D  +RH RRSRSRSRSRSR      S+Q   +   KR++S          S NLAKL
Sbjct: 301 ---DDRSRHDRRSRSRSRSRSR------SVQIEREPTPKRDSSNKEKSAVTVNS-NLAKL 338

Query: 415 KDIYGDVREEKGDLSKERFNNRRDSSGEEVIRLGG-SWK 452
           KD+YGD   +K D   E F  R+DSS EEVI+LGG SW+
Sbjct: 361 KDLYGDASSQKRD---EGFGTRKDSSSEEVIKLGGSSWR 338

[Close]

BLAST of Carg18286 vs. TAIR 10
Match: AT5G37370.3 (PRP38 family protein )

HSP 1 Score: 178.3 bits (451), Expect = 1.4e-44
Identity = 83/96 (86.46%), Postives = 90/96 (93.75%), Query Frame = 0


Query: 2  EIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRG 61
          EI++ G+A +SLLEKVL MNILSSDYFKELY LKTYHEV+DEIYNQV+HVEPWM GNCRG
Sbjct: 3  EIQSNGRAYESLLEKVLSMNILSSDYFKELYGLKTYHEVIDEIYNQVNHVEPWMGGNCRG 62

Query: 62 PSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAI 98
          PSTA+CLLYKFFTMKLTVKQMHGLLKH DSPYIRAI
Sbjct: 63 PSTAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAI 98

[Close]

BLAST of Carg18286 vs. TAIR 10
Match: AT1G60900.1 (U2 snRNP auxilliary factor, large subunit, splicing factor )

HSP 1 Score: 45.1 bits (105), Expect = 1.8e-04
Identity = 76/187 (40.64%), Postives = 105/187 (56.15%), Query Frame = 0


Query: 233 SDRDNRDDLQRSPSSRHPDNGER-SRDRDHDRERSSDRDHGRKMSKDRDHNRDSRRKDRD 292
           ++  N + +    S  H D+  R S D   D  + S++D+  +  +D+D N+D   +DR+
Sbjct: 15  TENHNENYISLESSPFHEDSKSRESHDLKKDSSKISEKDN--ENGRDKDGNKD---RDRE 74

Query: 293 RDRDRDRERSRNRERDRDRDRDREREKGRGRD---RERERDRDRERSY---DYDRRTHHA 352
           +DRDR++ R R+RE+ RDRDRDRER K R RD   R+R RDR RERS    D D   H  
Sbjct: 75  KDRDREKSRDRDREKSRDRDRDRERSKDRQRDRHHRDRHRDRSRERSEKRDDLDDDHHRR 134

Query: 353 DSRRDYKRS-SRDSVARHYRRSRSRSRSRSRSRSRSQSLQTGNDGYHKREASPVRGGTTE 412
              RD +RS  RD   RH RRSRSRSRSRS  RSRS+        +  R  S  R  +  
Sbjct: 135 SRDRDRRRSRDRDREVRHRRRSRSRSRSRSERRSRSEHRHKSE--HRSRSRSRSRSKSKR 194

The following BLAST results are available for this feature:

BLAST of Carg18286 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032708.1	3.3e-242	100.00	Pre-mRNA splicing factor SR-like 1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022955756.1	4.1e-229	95.34	pre-mRNA splicing factor SR-like 1 isoform X1 [Cucurbita moschata]	[more]
XP_023548529.1	1.7e-222	94.46	pre-mRNA splicing factor SR-like 1 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_038875168.1	3.3e-194	83.98	pre-mRNA splicing factor SR-like 1 isoform X1 [Benincasa hispida] >XP_038875169....	[more]
XP_022141497.1	1.5e-191	83.12	pre-mRNA splicing factor SR-like 1 isoform X1 [Momordica charantia] >XP_02214149...	[more]

BLAST of Carg18286 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWB1	5.4e-123	61.50	Pre-mRNA splicing factor SR-like 1 OS=Arabidopsis thaliana OX=3702 GN=SRL1 PE=1 ...	[more]
Q6AXY7	6.3e-47	38.30	Pre-mRNA-splicing factor 38B OS=Rattus norvegicus OX=10116 GN=Prpf38b PE=1 SV=1	[more]
Q5VTL8	5.4e-46	38.68	Pre-mRNA-splicing factor 38B OS=Homo sapiens OX=9606 GN=PRPF38B PE=1 SV=1	[more]
Q80SY5	2.0e-45	38.00	Pre-mRNA-splicing factor 38B OS=Mus musculus OX=10090 GN=Prpf38b PE=1 SV=1	[more]
Q6P7Y3	8.0e-42	35.81	Pre-mRNA-splicing factor 38B OS=Danio rerio OX=7955 GN=prpf38b PE=2 SV=1	[more]

BLAST of Carg18286 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GUQ9	2.0e-229	95.34	Pre-mRNA-splicing factor 38 OS=Cucurbita moschata OX=3662 GN=LOC111457654 PE=3 S...	[more]
A0A6J1CK04	7.4e-192	83.12	Pre-mRNA-splicing factor 38 OS=Momordica charantia OX=3673 GN=LOC111011867 PE=3 ...	[more]
A0A6J1JTS5	9.4e-187	81.33	Pre-mRNA-splicing factor 38 OS=Cucurbita maxima OX=3661 GN=LOC111489677 PE=3 SV=...	[more]
A0A5D3D5T6	1.4e-185	78.50	Pre-mRNA-splicing factor 38 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A6J1FF63	1.8e-185	79.74	Pre-mRNA-splicing factor 38 OS=Cucurbita moschata OX=3662 GN=LOC111444923 PE=3 S...	[more]

BLAST of Carg18286 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G37370.1	3.8e-124	61.50	PRP38 family protein	[more]
AT5G37370.2	3.2e-118	59.96	PRP38 family protein	[more]
AT5G37370.4	1.4e-97	58.90	PRP38 family protein	[more]
AT5G37370.3	1.4e-44	86.46	PRP38 family protein	[more]
AT1G60900.1	1.8e-04	40.64	U2 snRNP auxilliary factor, large subunit, splicing factor	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005037	Pre-mRNA-splicing factor 38	PFAM	PF03371	PRP38	coord: 11..161 e-value: 2.4E-51 score: 174.1
IPR005037	Pre-mRNA-splicing factor 38	PANTHER	PTHR23142	UNCHARACTERIZED	coord: 1..296
IPR005037	Pre-mRNA-splicing factor 38	PANTHER	PTHR23142	UNCHARACTERIZED	coord: 298..449
IPR024767	Pre-mRNA-splicing factor 38, C-terminal	PFAM	PF12871	PRP38_assoc	coord: 188..270 e-value: 4.7E-6 score: 27.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 232..357
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 415..442
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 203..228
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 177..451
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 358..376
None	No IPR available	PANTHER	PTHR23142:SF3	PRP38 FAMILY PROTEIN	coord: 298..449
None	No IPR available	PANTHER	PTHR23142:SF3	PRP38 FAMILY PROTEIN	coord: 1..296

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18286-RA	Carg18286-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0071011	precatalytic spliceosome