Carg18282 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg18282
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 17898658 .. 17899232 (+)
RNA-Seq ExpressionCarg18282
SyntenyCarg18282
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCGATATCCGATTAACTGCTTCCAGAAACGAAGATTCGTCCTCCGGCACTCGGTACTCTCTTTCCTTGGCATTCGATTCTGTATTCTCGTATTGCTCAATCTTCGCATCCACGAGATCCATGAACTTGTCGATGAACTTCGGAATCTCCACAGCAGAATCCTCCTCTCGATCGCGAGAACCGTGAGAAGTTAACAGAAATTGATCTACGTCTTCAAGAATCGTGTGGAGATCACAATGAAGAACCGGTTCATCCTTAGACTCATCCTTCTCCTCCAACTCCTCCTTCTTTTCCGTCTCAGTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTCCTGATCCTTATCATCCTCCAATTTATCTGCAGATTTTACATCGGATTCAACAGCAACAGTATCTGGAACGGCATCATGAGCGGGCAATTTGGGGGCATCATCGTTGGTTTTCTCAAGAAGGTCTGGATTCTCAGGTTGGTTCTTCTCCATTGTGGTTGAATTAGGGAATTGGAAGAACGAAAAAAGTGGAGAGTTTCAAGAAAAGAGATGCAAATTGTGAAGAAAATTATCCATGAAATGAAA

mRNA sequence

TTCGATATCCGATTAACTGCTTCCAGAAACGAAGATTCGTCCTCCGGCACTCGGTACTCTCTTTCCTTGGCATTCGATTCTAATCCTCCTCTCGATCGCGAGAACCGTGAGAAGTTAACAGAAATTGATCTACGTCTTCAAGAATCGTGTGGAGATCACAATGAAGAACCGATTTTACATCGGATTCAACAGCAACAGTATCTGGAACGGCATCATGAGCGGGCAATTTGGGGGCATCATCGTTGGTTTTCTCAAGAAGGTCTGGATTCTCAGGTTGGTTCTTCTCCATTGTGGTTGAATTAGGGAATTGGAAGAACGAAAAAAGTGGAGAGTTTCAAGAAAAGAGATGCAAATTGTGAAGAAAATTATCCATGAAATGAAA

Coding sequence (CDS)

TTCGATATCCGATTAACTGCTTCCAGAAACGAAGATTCGTCCTCCGGCACTCGGTACTCTCTTTCCTTGGCATTCGATTCTAATCCTCCTCTCGATCGCGAGAACCGTGAGAAGTTAACAGAAATTGATCTACGTCTTCAAGAATCGTGTGGAGATCACAATGAAGAACCGATTTTACATCGGATTCAACAGCAACAGTATCTGGAACGGCATCATGAGCGGGCAATTTGGGGGCATCATCGTTGGTTTTCTCAAGAAGGTCTGGATTCTCAGGTTGGTTCTTCTCCATTGTGGTTGAATTAG

Protein sequence

FDIRLTASRNEDSSSGTRYSLSLAFDSNPPLDRENREKLTEIDLRLQESCGDHNEEPILHRIQQQQYLERHHERAIWGHHRWFSQEGLDSQVGSSPLWLN
Homology
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BLAST of Carg18282 vs. NCBI nr
Match: KAG7032712.1 (hypothetical protein SDJN02_06762, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 207.6 bits (527), Expect = 5.0e-50
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   FDIRLTASRNEDSSSGTRYSLSLAFDSNPPLDRENREKLTEIDLRLQESCGDHNEEPILH 60
           FDIRLTASRNEDSSSGTRYSLSLAFDSNPPLDRENREKLTEIDLRLQESCGDHNEEPILH
Sbjct: 1   FDIRLTASRNEDSSSGTRYSLSLAFDSNPPLDRENREKLTEIDLRLQESCGDHNEEPILH 60

Query: 61  RIQQQQYLERHHERAIWGHHRWFSQEGLDSQVGSSPLWLN 101
           RIQQQQYLERHHERAIWGHHRWFSQEGLDSQVGSSPLWLN
Sbjct: 61  RIQQQQYLERHHERAIWGHHRWFSQEGLDSQVGSSPLWLN 100

The following BLAST results are available for this feature:
BLAST of Carg18282 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7032712.15.0e-50100.00hypothetical protein SDJN02_06762, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg18282 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg18282 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg18282 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18282-RACarg18282-RAmRNA