![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
Carg18239 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAAGGAAGAATCCACCAATGGATTTGGCGGAGCTTTGGTCAATTTTCGGCCCTGGCGTTGCCGGAGCTGTGTTCGGCGCCGGGTGGTGGTTCTGGGTTGACGCCGTTGTCTGCAGTTCTGTTGCCGTCTCCTTCCTCCACTATCTTCCAGGTTTTTTATTCATTTACCAGTCCACACCATGTATAATTTGCAGTTAGGGTTTTTTATGTTGTTTTGGTATTGGGGTTTTAGGTATTTTTGCTTCGTTTGCGGCTCTGATGTTCAATTGCGTTCGGAAGGAAGACATCGATTATTCACCATATGAGGAAGGCGAATGGAGGTGAGTATGTTATGATTTATCTGCTTACCTCTCTCTTTCTATCTCTTGTTGTTTTCAGCCGATTTTATTGTTTTAAATGGCACCAATCATACCGCCATCCTCTTTGCCTGATCATTCGATTCGATTGAAAGCAATGTCACAGTGTTTTTTCTTCAACAAGTCATTGCTCAATGTGATTTAGTGTCTTGCTAGCATTATTCTCCCTGGATGAGTTAGGATTTCATGAACTCTTACATCCGAGACTTAATAAGAAAATGTTAATTTATTGTATCCAATTAGAATACCCGTAACGATAGGTCGAAATCTCCATGCTGGATAAAAATACTAAATATAACCATCTAAAAGATAGAGTATTATTTTAAATCGTTACTTGCAGAGAGAACTAAAGCAAAAAAAAGCAACATGCTCTTCGTGTGTCGTCGTGACCTAATAAATGATCTGATATTGTATCAGATTAAAACAAGCTCGAAGTTGATTCGCACCGTTAATTCACGGATAACACATTGCGTTGGAGGCTAATGATAGAGGACATAGACTGCTTAGAAAATAATAATCTTTCTATCTCTTATGATATTCTAGATTTGTCGTTTCTAAACGTTACTTTAGAAGATAGGTCTTTTATATTGTCAGTATCTAGTCCATAATCCTCTTATACTGTCTTCATTGCTGGTAGTATATTGTGTCATGTCTGACCTATGCTAAGCATGGTCACAGTGGCATATTCAAAAACATTCATGCTCAATGTGTATTAGTGTTAATGTAAACTGGCAGATATTCTCCCTGGCGAAGATCATAGTTAGGATTTCATGAACACTTACATTGACGAGGACATATTCTTGGAATTGGCACATGAACATTTATAGTTAATACCGTAAACACGATAGTGTCTGCGATTCAGCCGTCGAGATATCAACTTCACAAAGTGATTGTGACGACGTGACTATATCCTAGTTTATTCGCGTTTGTAGGTCAACCTGGCTGTAAGTATACGATGTTGTTCAGTATATGTGTCTTATTGGTGATTAGACCGAGAGTTGATACATCCCAGAGATATCTATAGACGATCCTTTCAGTCTCAAACAATCTATGTTCAATATAGAGTTAGAAGGAAAGTCAAATTTATGTTTCTCTAGAACTCAATTGGGTTATGGGTTAAGGCCTCAGCTCATTCGATTGGGTCCGAGGGTGGGCTTGCTTTCATAGCATCTTGGCCTTCTAAGAGACTTTAGGTCAGTCATTCTTTGTATCTTTAAATTATTTATTTAGGTTGCAGTATAGACATTTCACATCCTGAATTAATCTCAATTCTGTATTGATCTACTCAGGAAGAAAAGCTATGTCTCGTTGAAGCGAGGTTAAGACTTATTAAATATTGATCCCAGCGAATCCTTAGTGAAAATATAGCTCGTGTTCTATTTTCTCTTATACAAACTTGTGTTTTGGATCCCATGTGATTAGAGTTTGGATGTAGTTCCGTCGGGAAGACTTATGTGAAGACCTTTTACGGATCTCATGGAGGATAGGCATTTAGGGTGCACATTATATGTTACTTTACACCTGGTCCAGGATCATGTGGGCTATCTTTCAGGATGTGTTATAGGCAGTCTTTGTATTCTTCGGAAGTGGTGCAGTATTAATCCTTGAAGAAAGAATCGCTCTCCCTGTAGTTTCAAGTAATTAATCCACTATTATTACAATGAGGGAGAGATGCATCTTTAGTAATTCTCTCGTCATCATTAGACGCACTATGAGGAGCTCCTCTGTAGTCACGTCTTACAAATAATATCTCGATCCAGGAATTTATTTCAAGTTCTAGCGACTCTTTTCCTTACTCTGGAAGATGAGCAAGATACTAAATAGATAGAAGAGATTGCGATCATCTCTTTTGGTACTGAATGTGTAGCAGTTTACTTTGATTGTTGTGGGGTGGCAAATTTGTTAGAGACGTTTATTCTACGGGTAGGCTTGGTCTCAGGAGTCGGCCGTGTGTATGAGCGAGCTATATCTGGGTATCATTTATATATATGTTTTTTCTATATTATATGTGAATCCTCCTTTATTAGCACGAGAACCTAAAATGTGCAGAGATCTGTAGAGAGTGGAGAATCTAAAGTGCTAAGGTTCTATGATTCATGATATTTCATTTTTTTATAAGATACCGTTTCATTAATGTTTGAGATTTACAAATATTATACTTATAAGTAATATCTTGAAGAAAATAACTAATAATCCTGTTATAACGAACCATGTATTATCCATGCCCTTACTAATAAGGACATGTTCGCCAATTTAACAATCAGGTAAGGTTGTAGGAAGACAACTTACACTATTTCTTGGTAAACAACATTGTTGAAGAGCCTAGTAGGAGTTTCCAATAAGATTCATTGAATTCACTCTTTCCAAATATTCCAAAAGAAAATCATGATGAGGTTGGGTCTATACCAGAGTTTTTGCATTCTTGAAAGGGGGTATGTTAAGACCATGTCCAGTTAATCTTTGACCTCCTTAGGAACAGTGAGGTGTCATCCGAAAATGGTGAGAATATTTATCCATAAGTTATAGGCATAAGTACACTACATAAATAGGTGGTTTTTGGATTCATTCTCTCTTGCATAAAGGGCATTAATTGGAAAATAGAGTCATGCAGGGCATTCATTTCTGTAGGTTTTCATTTGTGCTAATGGCTTTGTGCATAACTTCTCATGGGAAAAACTCCACCTTTCTTTATGATTTCCTTTCCATATTGTCTTGGGCTATTGTGAGGTTTATGCCTTTTATTTTTTCCCCCATATCTATCATTAAGGATTTTGTGGAGATAACCGATCCCTAGGAAGGCATTTCAATGAGCCTACTTCTTGGGATAACACTATTGGGCAAGGTCAAGGCTTAGCTTGGCCCATTATGTAGCTTTGCTATCCTTGAGGTTCGTATTGAGCTGTGACTCCCAAAATTTGTTGTCATATTTCCATATTTCTTTGATTGTGGTCGTCTTGCAATGTGAGTGCTATATAAAAGAGGATACTGCAATGCTAGCATGGTGTTGGAATCCAAGATGTGTTTTCTCCATCACCCACCCTATGGCAAATGCGGTTAGTGATGAGGTTTTGGTGCTCTTTTATAAACTTTCTGGTCCATTGGCAGAAGATGGGAATAATCGGTTTGTACATGATGTTGGAGCGTGTTTAGCTTTTATAAGATTCCTCCACAAGGCAGTGCCTTCAAGTGAGGTATGGTCACTTGTTAGATTTCACACCTCTCTTGCGTCTCTGTTTGTAAAGATTTTTGTCATTACCCCATAGGTCTTATTATGCATGACTAGAGCTGGTTGGGCTCTTCTTGGGTTTTTCGTGTTTTCTTTTTTGTTGGTATTCCTCGTGTATTCTTCCTTTTTTTTTTCCACAGTGAAAACTCACATTTTACCCCATAAAAATCCCCTTTTCAACCTTCTCCCCAATTGGGTGGGTTGTGAAAAGGAGGAACTAAGGGGCAAGAGTGAGGTTCGTTAGGTTTGAGAACATGCTTAGTGAGAGAGAGCTGAAAGAAGAGCATGTGTATGCAGAAAATATCATAAACGAAGACATGGAACGTAACTTCTTGATAGAATAGTCCAAGGATAGTAGACATAGGTGGAGATCCAACAACCATCGAAAAATGATGTATTAGAGGTTGTGGATCTCTGCGAAGGTATAAGAATAATATTCAGAATGCTATTATATAGAAATAAAATTTTCATGCATCATCCCTCCCAAACTTTAAAAGTCACGACCCCAAGAATTTTCATCAATCATAGGTCCACCAATTTAGGGAGGCAAACCAATAACCCAAGTTCTAGCAAAAGAAAAGACCAGCTCTTAAAAGAAAAGGAGCAATAGAGGAAAATGGTCTAGAGATTCGTCGTCCTTCTTACAAAGACAACAAGCCAAGGGGGACAAAGCCAGAGTGGGAACTTCTGTAATTTGACGGCAGGATTAACTATTAAGATTGAGACTTCTATAGGTGAGACACAAAAGAAATGTTCACTTTCTTAGGGACTTGAAATTCCAAATATAAACCACGAAAGGGGCCTTGAACTTAGCAGGAGGTTTGGTAAGGTAAGATGCATGGCAAACCATTTCCTCACACCTTCAGCAGTTGTGATACTTGTTTGAGAATAAAATTACTAGTGTGCAAGCTGAAATCTAGCTTGTAGGAAATTCATTAACACCCACTTAAAAATGGATTTCATGAAGTGGTAATTGTAGAATTCAAATCTGCATAGAAGGCCTAATGCATAAAGAAATCTTTTCATATGCCCTAAGCTTCCATACTAGTCTACAATATTGGTTCATACTAGGTAGGACATGATGAATTGATATGTTAGTTATTTGTTGAGATATCACGGAAATAAGCCTCTGTAAATTCAAGTTTCAGAGACCTATAAGCAAAGGAAAATTAGAAGACTTGTGTGATAGCATCGAGAATTTAATGTCTGTTTTGATGTGGTGCTAGTGTTTTTCTGTAATTAACAGTACTGACGTTTCCCTTAACTGCAGATTAAAGCTTTGGCTCTTCTTCGCTTATGTGGTATCCTTCGTTTCATTAGCAGCATCTGTGGGGCTCTTGATTCAAGATTCAGTAGTAAAAACTGGCCTATCAGCATGGACGGGAATTGCAGGAGTATTGCAGTGTGTGTTTGTGTTGGTTAGGTAAATGGCCTCTCTCCTTTTTATTATCTTAATTCTGATTTTTCCCATCTGTCTTTTAGTTGGATTTGTGCCAGCAAACATGTAGCCACTTCTTATTGTCTACTCCACCTAGTTGTGGAATCATTCAGCAAGGCAACTTTGTTAAAGAAGAGTTGTTGGGGTTCTTTCATTATGTTGTTTCTCTTGATTTCTAAGCATGTCTGAAACTACTACATAAGATGTTTAAATCATGCCATAAACAAAGTTGGTTGAACGAGAGTATTTTCTCTTTAGCAGTCTGATGCTGTATCAATATATGCCCTGTTCTTTGGTCTTCGTTGCATTAAATAGCTTGTGGAAAAACCAAAATCATTAAGGGGTTTCAATTTTCATCACTCGCACAAGTGTCATGTAATACAAAAATGCTACGTAGCTAGACCCTGGTCAGCACTGTCTATGTTCTGTTTTCCTGAAATACTGTTTGTTGCAGTGGGTTGATTTACTGGACTTCTCACACGGAATAAGTCGGAAAGAATTATGCACTTAGACCTCAGAGGCTGAAGAGTTACCAACTGCATAGCGCGTTGCATCGTCAAGTCGATTGTGTGTCACTTGACTTTTCCAACTATGGAACTGAACAGTAAGAGCTTTCTACTTCTTGTAAATGTCATGTTAATCTTAAGCTGAAACCATGTCTGTAAATCTTTATGAATCCAATATAAGTGAGCAAGTGAGCCAGCATTCAATGTTTCAGCCATTTCAGTTTGTCGCAGTGTTCATATTGTATACTTACAAAGCATAAAAATGATGCAGGGTGGTCAGTTTTGTTTTGGTTTTTAGTTTCTTTCCTTCGAAAAATTGTGGATGCAAAATGAATTAGATATATTTTAATCTGCCGAAATTCATTAATTGAAAGGTTATCTTATTACACCGTTTTATTTTATTTTTTTATTAACA AAAAGGAAGAATCCACCAATGGATTTGGCGGAGCTTTGGTCAATTTTCGGCCCTGGCGTTGCCGGAGCTGTGTTCGGCGCCGGGTGGTGGTTCTGGGTTGACGCCGTTGTCTGCAGTTCTGTTGCCGTCTCCTTCCTCCACTATCTTCCAGGTATTTTTGCTTCGTTTGCGGCTCTGATGTTCAATTGCGTTCGGAAGGAAGACATCGATTATTCACCATATGAGGAAGGCGAATGGAGATTAAAGCTTTGGCTCTTCTTCGCTTATGTGGTATCCTTCGTTTCATTAGCAGCATCTGTGGGGCTCTTGATTCAAGATTCAGTAGTAAAAACTGGCCTATCAGCATGGACGGGAATTGCAGGAGTATTGCAGTGTGTGTTTGTGTTGGTTAGTGGGTTGATTTACTGGACTTCTCACACGGAATAAGTCGGAAAGAATTATGCACTTAGACCTCAGAGGCTGAAGAGTTACCAACTGCATAGCGCGTTGCATCGTCAAGTCGATTGTGTGTCACTTGACTTTTCCAACTATGGAACTGAACAGTAAGAGCTTTCTACTTCTTGTAAATGTCATGTTAATCTTAAGCTGAAACCATGTCTGTAAATCTTTATGAATCCAATATAAGTGAGCAAGTGAGCCAGCATTCAATGTTTCAGCCATTTCAGTTTGTCGCAGTGTTCATATTGTATACTTACAAAGCATAAAAATGATGCAGGGTGGTCAGTTTTGTTTTGGTTTTTAGTTTCTTTCCTTCGAAAAATTGTGGATGCAAAATGAATTAGATATATTTTAATCTGCCGAAATTCATTAATTGAAAGGTTATCTTATTACACCGTTTTATTTTATTTTTTTATTAACA ATGGATTTGGCGGAGCTTTGGTCAATTTTCGGCCCTGGCGTTGCCGGAGCTGTGTTCGGCGCCGGGTGGTGGTTCTGGGTTGACGCCGTTGTCTGCAGTTCTGTTGCCGTCTCCTTCCTCCACTATCTTCCAGGTATTTTTGCTTCGTTTGCGGCTCTGATGTTCAATTGCGTTCGGAAGGAAGACATCGATTATTCACCATATGAGGAAGGCGAATGGAGATTAAAGCTTTGGCTCTTCTTCGCTTATGTGGTATCCTTCGTTTCATTAGCAGCATCTGTGGGGCTCTTGATTCAAGATTCAGTAGTAAAAACTGGCCTATCAGCATGGACGGGAATTGCAGGAGTATTGCAGTGTGTGTTTGTGTTGGTTAGTGGGTTGATTTACTGGACTTCTCACACGGAATAA MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGLSAWTGIAGVLQCVFVLVSGLIYWTSHTE Homology
BLAST of Carg18239 vs. NCBI nr
Match: KAG7032755.1 (Transmembrane protein 50A [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 277.3 bits (708), Expect = 6.9e-71 Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0
BLAST of Carg18239 vs. NCBI nr
Match: XP_022963347.1 (transmembrane protein 50A-like [Cucurbita moschata] >XP_022991142.1 transmembrane protein 50A-like [Cucurbita maxima] >XP_023517110.1 transmembrane protein 50A-like [Cucurbita pepo subsp. pepo] >KAG6602062.1 Transmembrane protein 50A, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 276.9 bits (707), Expect = 9.0e-71 Identity = 134/135 (99.26%), Postives = 135/135 (100.00%), Query Frame = 0
BLAST of Carg18239 vs. NCBI nr
Match: XP_038874577.1 (transmembrane protein 50A [Benincasa hispida]) HSP 1 Score: 270.4 bits (690), Expect = 8.4e-69 Identity = 130/135 (96.30%), Postives = 133/135 (98.52%), Query Frame = 0
BLAST of Carg18239 vs. NCBI nr
Match: XP_008460472.1 (PREDICTED: transmembrane protein 50A [Cucumis melo]) HSP 1 Score: 270.0 bits (689), Expect = 1.1e-68 Identity = 130/135 (96.30%), Postives = 133/135 (98.52%), Query Frame = 0
BLAST of Carg18239 vs. NCBI nr
Match: XP_022993057.1 (transmembrane protein 50A [Cucurbita maxima] >XP_023549618.1 transmembrane protein 50A-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 268.9 bits (686), Expect = 2.4e-68 Identity = 129/135 (95.56%), Postives = 133/135 (98.52%), Query Frame = 0
BLAST of Carg18239 vs. ExPASy Swiss-Prot
Match: Q9CXL1 (Transmembrane protein 50A OS=Mus musculus OX=10090 GN=Tmem50a PE=1 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 1.6e-09 Identity = 44/140 (31.43%), Postives = 64/140 (45.71%), Query Frame = 0
BLAST of Carg18239 vs. ExPASy Swiss-Prot
Match: O95807 (Transmembrane protein 50A OS=Homo sapiens OX=9606 GN=TMEM50A PE=1 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 2.7e-09 Identity = 41/126 (32.54%), Postives = 60/126 (47.62%), Query Frame = 0
BLAST of Carg18239 vs. ExPASy Swiss-Prot
Match: Q54T60 (Transmembrane protein 50 homolog OS=Dictyostelium discoideum OX=44689 GN=tmem50 PE=3 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 1.7e-08 Identity = 35/132 (26.52%), Postives = 69/132 (52.27%), Query Frame = 0
BLAST of Carg18239 vs. ExPASy Swiss-Prot
Match: Q9D1X9 (Transmembrane protein 50B OS=Mus musculus OX=10090 GN=Tmem50b PE=1 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 2.5e-07 Identity = 41/140 (29.29%), Postives = 63/140 (45.00%), Query Frame = 0
BLAST of Carg18239 vs. ExPASy Swiss-Prot
Match: Q3SZL9 (Transmembrane protein 50B OS=Bos taurus OX=9913 GN=TMEM50B PE=2 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 5.6e-07 Identity = 41/140 (29.29%), Postives = 62/140 (44.29%), Query Frame = 0
BLAST of Carg18239 vs. ExPASy TrEMBL
Match: A0A6J1JKY2 (transmembrane protein 50A-like OS=Cucurbita maxima OX=3661 GN=LOC111487827 PE=3 SV=1) HSP 1 Score: 276.9 bits (707), Expect = 4.3e-71 Identity = 134/135 (99.26%), Postives = 135/135 (100.00%), Query Frame = 0
BLAST of Carg18239 vs. ExPASy TrEMBL
Match: A0A6J1HF20 (transmembrane protein 50A-like OS=Cucurbita moschata OX=3662 GN=LOC111463579 PE=3 SV=1) HSP 1 Score: 276.9 bits (707), Expect = 4.3e-71 Identity = 134/135 (99.26%), Postives = 135/135 (100.00%), Query Frame = 0
BLAST of Carg18239 vs. ExPASy TrEMBL
Match: A0A1S3CCJ8 (transmembrane protein 50A OS=Cucumis melo OX=3656 GN=LOC103499276 PE=3 SV=1) HSP 1 Score: 270.0 bits (689), Expect = 5.3e-69 Identity = 130/135 (96.30%), Postives = 133/135 (98.52%), Query Frame = 0
BLAST of Carg18239 vs. ExPASy TrEMBL
Match: A0A6J1JRP9 (transmembrane protein 50A OS=Cucurbita maxima OX=3661 GN=LOC111489187 PE=3 SV=1) HSP 1 Score: 268.9 bits (686), Expect = 1.2e-68 Identity = 129/135 (95.56%), Postives = 133/135 (98.52%), Query Frame = 0
BLAST of Carg18239 vs. ExPASy TrEMBL
Match: A0A6J1CJN8 (transmembrane protein 50A OS=Momordica charantia OX=3673 GN=LOC111012019 PE=3 SV=1) HSP 1 Score: 267.7 bits (683), Expect = 2.6e-68 Identity = 128/135 (94.81%), Postives = 132/135 (97.78%), Query Frame = 0
BLAST of Carg18239 vs. TAIR 10
Match: AT1G36980.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0220 (InterPro:IPR007919); Has 424 Blast hits to 424 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 228; Fungi - 120; Plants - 62; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). ) HSP 1 Score: 248.4 bits (633), Expect = 3.2e-66 Identity = 115/135 (85.19%), Postives = 125/135 (92.59%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|