Carg18209 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18209
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like
Location	Carg_Chr07: 939100 .. 939678 (-)
RNA-Seq Expression	Carg18209
Synteny	Carg18209

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGGAGACAGACCAGGAGGTTGTGAAGGCTCGTCATCTCGGTCGGCCACCGTCGATCCACAACAACAGCTGCAGCCTCCGCCACAGCCCACTCAGCCCAGTGCTGTTCCCTTGAGCCGTTACGAGTCGCAGAAGCGACGAGATTGGAACACTTTTGGGCAATATCTAAAAAACCAAACACCCCCAGTGCCGTTATCCCACTGTAACTATAACCATGTTCTTGAATTTCTTCGATACCTGGATCAGTTTGGAAAAACAAGGGTTCACTCACATGGGTGTGTGTTTTTCGGGCAGCCCGACCCGCCTGCTCCCTGCCCTTGCCCATTGAAACAGGCTTGGGGCAGTCTGGATGCCCTGATCGGCCGACTCCGTGCCGCCTACGAGGAGAGTGGAGGTTCCCCAGAGGTGAACCCTTTTGGAAATGGAGCCATTCGGATGTATCTACGAGAGGTGAAGGATTGTCAAGCGAAGGCCAGAGGAATTCCGTACAAGAAGAAGAAGAAGAAGAAGAGGAATCAGATTATTAAGGGCAACGATAATAATGACACCAACGCTGCTTTGACCCAGATGGCTTGA

mRNA sequence

ATGTTAGGAGACAGACCAGGAGGTTGTGAAGGCTCGTCATCTCGGTCGGCCACCGTCGATCCACAACAACAGCTGCAGCCTCCGCCACAGCCCACTCAGCCCAGTGCTGTTCCCTTGAGCCGTTACGAGTCGCAGAAGCGACGAGATTGGAACACTTTTGGGCAATATCTAAAAAACCAAACACCCCCAGTGCCGTTATCCCACTGTAACTATAACCATGTTCTTGAATTTCTTCGATACCTGGATCAGTTTGGAAAAACAAGGGTTCACTCACATGGGTGTGTGTTTTTCGGGCAGCCCGACCCGCCTGCTCCCTGCCCTTGCCCATTGAAACAGGCTTGGGGCAGTCTGGATGCCCTGATCGGCCGACTCCGTGCCGCCTACGAGGAGAGTGGAGGTTCCCCAGAGGTGAACCCTTTTGGAAATGGAGCCATTCGGATGTATCTACGAGAGGTGAAGGATTGTCAAGCGAAGGCCAGAGGAATTCCGTACAAGAAGAAGAAGAAGAAGAAGAGGAATCAGATTATTAAGGGCAACGATAATAATGACACCAACGCTGCTTTGACCCAGATGGCTTGA

Coding sequence (CDS)

ATGTTAGGAGACAGACCAGGAGGTTGTGAAGGCTCGTCATCTCGGTCGGCCACCGTCGATCCACAACAACAGCTGCAGCCTCCGCCACAGCCCACTCAGCCCAGTGCTGTTCCCTTGAGCCGTTACGAGTCGCAGAAGCGACGAGATTGGAACACTTTTGGGCAATATCTAAAAAACCAAACACCCCCAGTGCCGTTATCCCACTGTAACTATAACCATGTTCTTGAATTTCTTCGATACCTGGATCAGTTTGGAAAAACAAGGGTTCACTCACATGGGTGTGTGTTTTTCGGGCAGCCCGACCCGCCTGCTCCCTGCCCTTGCCCATTGAAACAGGCTTGGGGCAGTCTGGATGCCCTGATCGGCCGACTCCGTGCCGCCTACGAGGAGAGTGGAGGTTCCCCAGAGGTGAACCCTTTTGGAAATGGAGCCATTCGGATGTATCTACGAGAGGTGAAGGATTGTCAAGCGAAGGCCAGAGGAATTCCGTACAAGAAGAAGAAGAAGAAGAAGAGGAATCAGATTATTAAGGGCAACGATAATAATGACACCAACGCTGCTTTGACCCAGATGGCTTGA

Protein sequence

MLGDRPGGCEGSSSRSATVDPQQQLQPPPQPTQPSAVPLSRYESQKRRDWNTFGQYLKNQTPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDALIGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKGNDNNDTNAALTQMA

Homology

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BLAST of Carg18209 vs. NCBI nr
Match: XP_022926651.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata] >XP_022926652.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata] >KAG7026524.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 404.1 bits (1037), Expect = 6.9e-109
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   MLGDRPGGCEGSSSRSATVDPQQQLQPPPQPTQPSAVPLSRYESQKRRDWNTFGQYLKNQ 60
           MLGDRPGGCEGSSSRSATVDPQQQLQPPPQPTQPSAVPLSRYESQKRRDWNTFGQYLKNQ
Sbjct: 1   MLGDRPGGCEGSSSRSATVDPQQQLQPPPQPTQPSAVPLSRYESQKRRDWNTFGQYLKNQ 60

Query: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120
           TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL
Sbjct: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120

Query: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKGND 180
           IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKGND
Sbjct: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKGND 180

Query: 181 NNDTNAALTQMA 193
           NNDTNAALTQMA
Sbjct: 181 NNDTNAALTQMA 192

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BLAST of Carg18209 vs. NCBI nr
Match: XP_023518847.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita pepo subsp. pepo] >XP_023518848.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 397.9 bits (1021), Expect = 5.0e-107
Identity = 190/192 (98.96%), Postives = 190/192 (98.96%), Query Frame = 0


Query: 1   MLGDRPGGCEGSSSRSATVDPQQQLQPPPQPTQPSAVPLSRYESQKRRDWNTFGQYLKNQ 60
           MLGDRPGGCEGSSSRSATVD QQQLQPPPQPTQ SAVPLSRYESQKRRDWNTFGQYLKNQ
Sbjct: 1   MLGDRPGGCEGSSSRSATVDQQQQLQPPPQPTQASAVPLSRYESQKRRDWNTFGQYLKNQ 60

Query: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120
           TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL
Sbjct: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120

Query: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKGND 180
           IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKGND
Sbjct: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKGND 180

Query: 181 NNDTNAALTQMA 193
           NNDTNAALTQMA
Sbjct: 181 NNDTNAALTQMA 192

[Close]

BLAST of Carg18209 vs. NCBI nr
Match: XP_023003302.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima] >XP_023003303.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima] >XP_023003304.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima])

HSP 1 Score: 384.4 bits (986), Expect = 5.7e-103
Identity = 185/192 (96.35%), Postives = 185/192 (96.35%), Query Frame = 0


Query: 1   MLGDRPGGCEGSSSRSATVDPQQQLQPPPQPTQPSAVPLSRYESQKRRDWNTFGQYLKNQ 60
           MLGD P  CE SSSRSAT D QQQLQPPPQPTQPS VPLSRYESQKRRDWNTFGQYLKNQ
Sbjct: 1   MLGDTP-SCEASSSRSATADQQQQLQPPPQPTQPSVVPLSRYESQKRRDWNTFGQYLKNQ 60

Query: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120
           TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL
Sbjct: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120

Query: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKGND 180
           IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKGND
Sbjct: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKGND 180

Query: 181 NNDTNAALTQMA 193
           NNDTNAALTQMA
Sbjct: 181 NNDTNAALTQMA 191

[Close]

BLAST of Carg18209 vs. NCBI nr
Match: KAG6594547.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 352.4 bits (903), Expect = 2.4e-93
Identity = 163/164 (99.39%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MLGDRPGGCEGSSSRSATVDPQQQLQPPPQPTQPSAVPLSRYESQKRRDWNTFGQYLKNQ 60
           MLGDRPGGCEGSSSRSATVDPQQQLQPPPQPTQPSAVPLSRYESQKRRDWNTFGQYLKNQ
Sbjct: 1   MLGDRPGGCEGSSSRSATVDPQQQLQPPPQPTQPSAVPLSRYESQKRRDWNTFGQYLKNQ 60

Query: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120
           TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL
Sbjct: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120

Query: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPY 165
           IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIP+
Sbjct: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPW 164

[Close]

BLAST of Carg18209 vs. NCBI nr
Match: KAA0052619.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo var. makuwa] >TYK13209.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo var. makuwa])

HSP 1 Score: 300.8 bits (769), Expect = 8.3e-78
Identity = 158/206 (76.70%), Postives = 164/206 (79.61%), Query Frame = 0


Query: 1   MLGDRPGGCEGSSSRSA-TVDPQQQLQPPPQPTQPSA-VPLSRYESQKRRDWNTFGQYLK 60
           MLG+R   CEGSSS  A T D QQQ Q      QP A VPLSRYESQKRRDWNTFGQYLK
Sbjct: 1   MLGER-AICEGSSSGLAITADQQQQQQQAAGQAQPGAVVPLSRYESQKRRDWNTFGQYLK 60

Query: 61  NQTPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLD 120
           NQTPPV LSHCN NHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLD
Sbjct: 61  NQTPPVSLSHCNCNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLD 120

Query: 121 ALIGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIK- 180
           ALIGRLRAAYEE GGSPE NPFGNGAIR YLREVK+ QAKARGIPYKKKKKK+ NQ +  
Sbjct: 121 ALIGRLRAAYEEHGGSPEGNPFGNGAIRTYLREVKESQAKARGIPYKKKKKKRNNQTMMM 180

Query: 181 ------------GNDNNDTNAALTQM 192
                        N+NNDTNA LT +
Sbjct: 181 NNMNKQQQLQQLPNNNNDTNAPLTHI 205

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BLAST of Carg18209 vs. ExPASy Swiss-Prot
Match: Q9S7R3 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=LSH10 PE=1 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.2e-65
Identity = 114/156 (73.08%), Postives = 135/156 (86.54%), Query Frame = 0


Query: 32  TQPSAVPLSRYESQKRRDWNTFGQYLKNQTPPVPLSHCNYNHVLEFLRYLDQFGKTRVHS 91
           ++P   P SRYESQKRRDWNTFGQYLKNQ PPVP+SHC+ NHVL+FLRYLDQFGKT+VH 
Sbjct: 17  SEPPVTP-SRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHV 76

Query: 92  HGCVFFGQPDPPAPCPCPLKQAWGSLDALIGRLRAAYEESGGSPEVNPFGNGAIRMYLRE 151
            GC+F+GQP+PPAPC CPL+QAWGSLDALIGRLRAAYEE+GG PE NPF +GAIR+YLRE
Sbjct: 77  PGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLRE 136

Query: 152 VKDCQAKARGIPYKKKKKKKRNQIIKGNDNNDTNAA 188
           V++CQAKARGIPYKKKKKKK    + G   + ++++
Sbjct: 137 VRECQAKARGIPYKKKKKKKPTPEMGGGREDSSSSS 171

[Close]

BLAST of Carg18209 vs. ExPASy Swiss-Prot
Match: Q9ZVA0 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 OS=Arabidopsis thaliana OX=3702 GN=LSH7 PE=1 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 3.9e-62
Identity = 118/181 (65.19%), Postives = 137/181 (75.69%), Query Frame = 0


Query: 7   GGCEGSSSRSATVDPQQQLQPPPQPTQPSAVP----LSRYESQKRRDWNTFGQYLKNQTP 66
           G  EGSS        Q Q QP PQP QP + P    LSRYESQKRRDWNTF QYL+NQ P
Sbjct: 10  GIAEGSS--------QPQSQPQPQPHQPQSPPNPPALSRYESQKRRDWNTFCQYLRNQQP 69

Query: 67  PVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDALIG 126
           PV +S C  NH+L+FL+YLDQFGKT+VH HGCVFFGQ +P   C CPLKQAWGSLDALIG
Sbjct: 70  PVHISQCGSNHILDFLQYLDQFGKTKVHIHGCVFFGQVEPAGQCNCPLKQAWGSLDALIG 129

Query: 127 RLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKGNDNN 184
           RLRAA+EE+GG PE NPF  G IR++LREV+D QAKARG+PYKK+KK+K+   +K +D  
Sbjct: 130 RLRAAFEENGGLPERNPFAGGGIRVFLREVRDSQAKARGVPYKKRKKRKKRNPMKSHDGE 182

[Close]

BLAST of Carg18209 vs. ExPASy Swiss-Prot
Match: Q9SN52 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 OS=Arabidopsis thaliana OX=3702 GN=LSH9 PE=1 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 3.6e-60
Identity = 110/151 (72.85%), Postives = 128/151 (84.77%), Query Frame = 0


Query: 28  PPQPTQPSAVPLSRYESQKRRDWNTFGQYLKNQTPPVPLSHCNYNHVLEFLRYLDQFGKT 87
           PPQP Q    PLSRYESQKRRDWNTF QYLK+Q PP+ +S  +Y HVL FLRYLDQFGKT
Sbjct: 28  PPQPQQ----PLSRYESQKRRDWNTFVQYLKSQNPPLMMSQFDYTHVLSFLRYLDQFGKT 87

Query: 88  RVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDALIGRLRAAYEE-SGGSPEVNPFGNGAIR 147
           +VH   CVFFGQPDPP PC CPLKQAWGSLDALIGRLRAAYEE  GGSP+ NPF NG+IR
Sbjct: 88  KVHHQACVFFGQPDPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNPFANGSIR 147

Query: 148 MYLREVKDCQAKARGIPYKKKKKKK-RNQII 177
           ++LREV++ QAKARGIPY+KKK++K +N+++
Sbjct: 148 VHLREVRESQAKARGIPYRKKKRRKTKNEVV 174

[Close]

BLAST of Carg18209 vs. ExPASy Swiss-Prot
Match: A2Y5N0 (Protein G1-like8 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_20303 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.2e-58
Identity = 109/167 (65.27%), Postives = 128/167 (76.65%), Query Frame = 0


Query: 8   GCEGSSSRSATVDPQQQLQPPPQPTQPSAVPLSRYESQKRRDWNTFGQYLKNQTPPVPLS 67
           G  G +   A   P  Q  P  QP Q     LSRYESQKRRDWNTF QYL+N  PP+ L+
Sbjct: 3   GGGGGADAQAQAQPVAQAPPAMQPMQ----QLSRYESQKRRDWNTFLQYLRNHRPPLTLA 62

Query: 68  HCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDALIGRLRAA 127
            C+  HV+EFL+YLDQFGKT+VH+ GC ++GQP PPAPCPCPL+QAWGSLDALIGRLRAA
Sbjct: 63  RCSGAHVIEFLKYLDQFGKTKVHASGCAYYGQPSPPAPCPCPLRQAWGSLDALIGRLRAA 122

Query: 128 YEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQ 175
           YEESG +PE NPF   A+R+YLREV+D QAKARGIPY+KKK+K+  Q
Sbjct: 123 YEESGHAPESNPFAARAVRIYLREVRDAQAKARGIPYEKKKRKRTQQ 165

[Close]

BLAST of Carg18209 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.0e-58
Identity = 102/133 (76.69%), Postives = 118/133 (88.72%), Query Frame = 0


Query: 39  LSRYESQKRRDWNTFGQYLKNQTPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFG 98
           LSRYE+QKRRDWNTFGQYL+N  PP+ LS C+  HVLEFLRYLDQFGKT+VH+H C FFG
Sbjct: 46  LSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFG 105

Query: 99  QPDPPAPCPCPLKQAWGSLDALIGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAK 158
            P+PPAPC CPL+QAWGSLDALIGRLRAA+EE+GGSPE NPFG  A+R+YLREV+D QAK
Sbjct: 106 HPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAK 165

Query: 159 ARGIPYKKKKKKK 172
           ARGI Y+KKK+K+
Sbjct: 166 ARGISYEKKKRKR 178

[Close]

BLAST of Carg18209 vs. ExPASy TrEMBL
Match: A0A6J1EEZ4 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 GN=LOC111433720 PE=3 SV=1)

HSP 1 Score: 404.1 bits (1037), Expect = 3.4e-109
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   MLGDRPGGCEGSSSRSATVDPQQQLQPPPQPTQPSAVPLSRYESQKRRDWNTFGQYLKNQ 60
           MLGDRPGGCEGSSSRSATVDPQQQLQPPPQPTQPSAVPLSRYESQKRRDWNTFGQYLKNQ
Sbjct: 1   MLGDRPGGCEGSSSRSATVDPQQQLQPPPQPTQPSAVPLSRYESQKRRDWNTFGQYLKNQ 60

Query: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120
           TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL
Sbjct: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120

Query: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKGND 180
           IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKGND
Sbjct: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKGND 180

Query: 181 NNDTNAALTQMA 193
           NNDTNAALTQMA
Sbjct: 181 NNDTNAALTQMA 192

[Close]

BLAST of Carg18209 vs. ExPASy TrEMBL
Match: A0A6J1KW42 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=LOC111496952 PE=3 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 2.8e-103
Identity = 185/192 (96.35%), Postives = 185/192 (96.35%), Query Frame = 0


Query: 1   MLGDRPGGCEGSSSRSATVDPQQQLQPPPQPTQPSAVPLSRYESQKRRDWNTFGQYLKNQ 60
           MLGD P  CE SSSRSAT D QQQLQPPPQPTQPS VPLSRYESQKRRDWNTFGQYLKNQ
Sbjct: 1   MLGDTP-SCEASSSRSATADQQQQLQPPPQPTQPSVVPLSRYESQKRRDWNTFGQYLKNQ 60

Query: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120
           TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL
Sbjct: 61  TPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDAL 120

Query: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKGND 180
           IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKGND
Sbjct: 121 IGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKGND 180

Query: 181 NNDTNAALTQMA 193
           NNDTNAALTQMA
Sbjct: 181 NNDTNAALTQMA 191

[Close]

BLAST of Carg18209 vs. ExPASy TrEMBL
Match: A0A5A7UGI5 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008220 PE=3 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 4.0e-78
Identity = 158/206 (76.70%), Postives = 164/206 (79.61%), Query Frame = 0


Query: 1   MLGDRPGGCEGSSSRSA-TVDPQQQLQPPPQPTQPSA-VPLSRYESQKRRDWNTFGQYLK 60
           MLG+R   CEGSSS  A T D QQQ Q      QP A VPLSRYESQKRRDWNTFGQYLK
Sbjct: 1   MLGER-AICEGSSSGLAITADQQQQQQQAAGQAQPGAVVPLSRYESQKRRDWNTFGQYLK 60

Query: 61  NQTPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLD 120
           NQTPPV LSHCN NHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLD
Sbjct: 61  NQTPPVSLSHCNCNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLD 120

Query: 121 ALIGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIK- 180
           ALIGRLRAAYEE GGSPE NPFGNGAIR YLREVK+ QAKARGIPYKKKKKK+ NQ +  
Sbjct: 121 ALIGRLRAAYEEHGGSPEGNPFGNGAIRTYLREVKESQAKARGIPYKKKKKKRNNQTMMM 180

Query: 181 ------------GNDNNDTNAALTQM 192
                        N+NNDTNA LT +
Sbjct: 181 NNMNKQQQLQQLPNNNNDTNAPLTHI 205

[Close]

BLAST of Carg18209 vs. ExPASy TrEMBL
Match: A0A0A0KNK5 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G519580 PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 3.4e-77
Identity = 157/208 (75.48%), Postives = 164/208 (78.85%), Query Frame = 0


Query: 1   MLGDRPGGCEGSSSRSA-TVDPQQQLQP--PPQPTQPSAVPLSRYESQKRRDWNTFGQYL 60
           MLG+R   CEGSSS  A T D QQQ Q     Q    + VPLSRYESQKRRDWNTFGQYL
Sbjct: 1   MLGER-AICEGSSSGLAITADQQQQQQQAGQAQAGTGAGVPLSRYESQKRRDWNTFGQYL 60

Query: 61  KNQTPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSL 120
           KNQTPPV LSHCN NHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSL
Sbjct: 61  KNQTPPVSLSHCNCNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSL 120

Query: 121 DALIGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIK 180
           DALIGRLRAAYEE GGSPE NPFGNGAIR YLREVK+ QAKARGIPYKKKKKK+ NQ++ 
Sbjct: 121 DALIGRLRAAYEEHGGSPEGNPFGNGAIRTYLREVKESQAKARGIPYKKKKKKRNNQMMM 180

Query: 181 --------------GNDNNDTNAALTQM 192
                          NDNNDTNA LT +
Sbjct: 181 MNNTNKQQQLLQQLPNDNNDTNAPLTHI 207

[Close]

BLAST of Carg18209 vs. ExPASy TrEMBL
Match: A0A1S3CP28 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC103503153 PE=3 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.3e-76
Identity = 158/210 (75.24%), Postives = 164/210 (78.10%), Query Frame = 0


Query: 1   MLGDRPGGCEGSSSRSA-TVDPQQQLQPPPQ-----PTQPSA-VPLSRYESQKRRDWNTF 60
           MLG+R   CEGSSS  A T D Q Q Q   Q       QP A VPLSRYESQKRRDWNTF
Sbjct: 1   MLGER-AICEGSSSGLAITADQQHQQQQQQQQQAAGQAQPGAVVPLSRYESQKRRDWNTF 60

Query: 61  GQYLKNQTPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQA 120
           GQYLKNQTPPV LSHCN NHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQA
Sbjct: 61  GQYLKNQTPPVSLSHCNCNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQA 120

Query: 121 WGSLDALIGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRN 180
           WGSLDALIGRLRAAYEE GGSPE NPFGNGAIR YLREVK+ QAKARGIPYKKKKKK+ N
Sbjct: 121 WGSLDALIGRLRAAYEEHGGSPEGNPFGNGAIRTYLREVKESQAKARGIPYKKKKKKRNN 180

Query: 181 QIIK------------GNDNNDTNAALTQM 192
           Q +              N+NNDTNA LT +
Sbjct: 181 QTMMMNNMNKQQLQQLPNNNNDTNAPLTHI 209

[Close]

BLAST of Carg18209 vs. TAIR 10
Match: AT2G42610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 250.0 bits (637), Expect = 1.6e-66
Identity = 114/156 (73.08%), Postives = 135/156 (86.54%), Query Frame = 0


Query: 32  TQPSAVPLSRYESQKRRDWNTFGQYLKNQTPPVPLSHCNYNHVLEFLRYLDQFGKTRVHS 91
           ++P   P SRYESQKRRDWNTFGQYLKNQ PPVP+SHC+ NHVL+FLRYLDQFGKT+VH 
Sbjct: 17  SEPPVTP-SRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHV 76

Query: 92  HGCVFFGQPDPPAPCPCPLKQAWGSLDALIGRLRAAYEESGGSPEVNPFGNGAIRMYLRE 151
            GC+F+GQP+PPAPC CPL+QAWGSLDALIGRLRAAYEE+GG PE NPF +GAIR+YLRE
Sbjct: 77  PGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLRE 136

Query: 152 VKDCQAKARGIPYKKKKKKKRNQIIKGNDNNDTNAA 188
           V++CQAKARGIPYKKKKKKK    + G   + ++++
Sbjct: 137 VRECQAKARGIPYKKKKKKKPTPEMGGGREDSSSSS 171

[Close]

BLAST of Carg18209 vs. TAIR 10
Match: AT2G42610.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 250.0 bits (637), Expect = 1.6e-66
Identity = 114/156 (73.08%), Postives = 135/156 (86.54%), Query Frame = 0


Query: 32  TQPSAVPLSRYESQKRRDWNTFGQYLKNQTPPVPLSHCNYNHVLEFLRYLDQFGKTRVHS 91
           ++P   P SRYESQKRRDWNTFGQYLKNQ PPVP+SHC+ NHVL+FLRYLDQFGKT+VH 
Sbjct: 17  SEPPVTP-SRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHV 76

Query: 92  HGCVFFGQPDPPAPCPCPLKQAWGSLDALIGRLRAAYEESGGSPEVNPFGNGAIRMYLRE 151
            GC+F+GQP+PPAPC CPL+QAWGSLDALIGRLRAAYEE+GG PE NPF +GAIR+YLRE
Sbjct: 77  PGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLRE 136

Query: 152 VKDCQAKARGIPYKKKKKKKRNQIIKGNDNNDTNAA 188
           V++CQAKARGIPYKKKKKKK    + G   + ++++
Sbjct: 137 VRECQAKARGIPYKKKKKKKPTPEMGGGREDSSSSS 171

[Close]

BLAST of Carg18209 vs. TAIR 10
Match: AT1G78815.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 239.2 bits (609), Expect = 2.8e-63
Identity = 118/181 (65.19%), Postives = 137/181 (75.69%), Query Frame = 0


Query: 7   GGCEGSSSRSATVDPQQQLQPPPQPTQPSAVP----LSRYESQKRRDWNTFGQYLKNQTP 66
           G  EGSS        Q Q QP PQP QP + P    LSRYESQKRRDWNTF QYL+NQ P
Sbjct: 10  GIAEGSS--------QPQSQPQPQPHQPQSPPNPPALSRYESQKRRDWNTFCQYLRNQQP 69

Query: 67  PVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDALIG 126
           PV +S C  NH+L+FL+YLDQFGKT+VH HGCVFFGQ +P   C CPLKQAWGSLDALIG
Sbjct: 70  PVHISQCGSNHILDFLQYLDQFGKTKVHIHGCVFFGQVEPAGQCNCPLKQAWGSLDALIG 129

Query: 127 RLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAKARGIPYKKKKKKKRNQIIKGNDNN 184
           RLRAA+EE+GG PE NPF  G IR++LREV+D QAKARG+PYKK+KK+K+   +K +D  
Sbjct: 130 RLRAAFEENGGLPERNPFAGGGIRVFLREVRDSQAKARGVPYKKRKKRKKRNPMKSHDGE 182

[Close]

BLAST of Carg18209 vs. TAIR 10
Match: AT4G18610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 232.6 bits (592), Expect = 2.6e-61
Identity = 110/151 (72.85%), Postives = 128/151 (84.77%), Query Frame = 0


Query: 28  PPQPTQPSAVPLSRYESQKRRDWNTFGQYLKNQTPPVPLSHCNYNHVLEFLRYLDQFGKT 87
           PPQP Q    PLSRYESQKRRDWNTF QYLK+Q PP+ +S  +Y HVL FLRYLDQFGKT
Sbjct: 28  PPQPQQ----PLSRYESQKRRDWNTFVQYLKSQNPPLMMSQFDYTHVLSFLRYLDQFGKT 87

Query: 88  RVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDALIGRLRAAYEE-SGGSPEVNPFGNGAIR 147
           +VH   CVFFGQPDPP PC CPLKQAWGSLDALIGRLRAAYEE  GGSP+ NPF NG+IR
Sbjct: 88  KVHHQACVFFGQPDPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNPFANGSIR 147

Query: 148 MYLREVKDCQAKARGIPYKKKKKKK-RNQII 177
           ++LREV++ QAKARGIPY+KKK++K +N+++
Sbjct: 148 VHLREVRESQAKARGIPYRKKKRRKTKNEVV 174

[Close]

BLAST of Carg18209 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 226.9 bits (577), Expect = 1.4e-59
Identity = 102/133 (76.69%), Postives = 118/133 (88.72%), Query Frame = 0


Query: 39  LSRYESQKRRDWNTFGQYLKNQTPPVPLSHCNYNHVLEFLRYLDQFGKTRVHSHGCVFFG 98
           LSRYE+QKRRDWNTFGQYL+N  PP+ LS C+  HVLEFLRYLDQFGKT+VH+H C FFG
Sbjct: 46  LSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFG 105

Query: 99  QPDPPAPCPCPLKQAWGSLDALIGRLRAAYEESGGSPEVNPFGNGAIRMYLREVKDCQAK 158
            P+PPAPC CPL+QAWGSLDALIGRLRAA+EE+GGSPE NPFG  A+R+YLREV+D QAK
Sbjct: 106 HPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAK 165

Query: 159 ARGIPYKKKKKKK 172
           ARGI Y+KKK+K+
Sbjct: 166 ARGISYEKKKRKR 178

The following BLAST results are available for this feature:

BLAST of Carg18209 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022926651.1	6.9e-109	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata] >XP_022926...	[more]
XP_023518847.1	5.0e-107	98.96	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita pepo subsp. pepo] >X...	[more]
XP_023003302.1	5.7e-103	96.35	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima] >XP_02300330...	[more]
KAG6594547.1	2.4e-93	99.39	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma sub...	[more]
KAA0052619.1	8.3e-78	76.70	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo var. makuwa] >TYK...	[more]

BLAST of Carg18209 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7R3	2.2e-65	73.08	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
Q9ZVA0	3.9e-62	65.19	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q9SN52	3.6e-60	72.85	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
A2Y5N0	1.2e-58	65.27	Protein G1-like8 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_20303 PE=3 SV=1	[more]
Q9LW68	2.0e-58	76.69	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]

BLAST of Carg18209 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EEZ4	3.4e-109	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1KW42	2.8e-103	96.35	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A5A7UGI5	4.0e-78	76.70	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=...	[more]
A0A0A0KNK5	3.4e-77	75.48	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G519580 PE=3 S...	[more]
A0A1S3CP28	1.3e-76	75.24	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]

BLAST of Carg18209 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42610.1	1.6e-66	73.08	Protein of unknown function (DUF640)	[more]
AT2G42610.2	1.6e-66	73.08	Protein of unknown function (DUF640)	[more]
AT1G78815.1	2.8e-63	65.19	Protein of unknown function (DUF640)	[more]
AT4G18610.1	2.6e-61	72.85	Protein of unknown function (DUF640)	[more]
AT3G23290.2	1.4e-59	76.69	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 33..154 e-value: 2.2E-62 score: 208.8
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 41..168 score: 76.527878
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 178..192
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 166..192
None	No IPR available	PANTHER	PTHR31165:SF9	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 6	coord: 9..183
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 9..183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18209-RA	Carg18209-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus