Carg18204 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg18204
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPentatricopeptide repeat-containing protein
LocationCarg_Chr11: 913565 .. 914902 (+)
RNA-Seq ExpressionCarg18204
SyntenyCarg18204
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTCTGATGGAACCATGCCAGATTTGTTCTGCTACAACACTTCCCTTAGGTGCCTTTGCAAGCATAATCTTAAGAAAAATCCTTCAGGTCTTGTGCCTGAAGCATTGAATGTGATGATGGAAATGAGATCCTATATGATTGCCCCAAACTCTCAATCAGTTGTAATGTATTGTTGTCATGTCTGGGTAGGATCAGGAGAGTGAAGGAATAATGTAGAACCCTTGACATGATGAAACGATCTGGTTTTCGACCCGATTGGGTTGGCTATTATCTTGTGGTGAGAGTTCTGTTCCTGAGTGGAAGGTTTGGGAAAGGGCACGGGATTGTGGACGACATGGTTGATCCCGGATCGAAAATTCTACTTTGATTTGATTGGTATTCTGTGTGGAGCTGAGAGAGCAAGTTATGCACTTGAGCTGTTCGAGAAAATGAAAAGAAGCTCATTGGGAGGTTATAGTCCAGTTTATGATGTGCTCATACCAAAGCTTTGCAGAGGAGGTGATTTTGAAATGGGCAGGCAACTGTGGGAGGAGGCCATGGCTATGGGTCTCAAGCTTGGGTGCTCAGTGAGGTTTTCAAGCCAACAAGAAAGATTCATAGCAAAATTCTTGAGGAATACAACAGAGGCTGAGAAGCAAAACGAAGCTGCAACTGACAAAACCATAGCGATGGGCAAGAGAAGTAAGAATCTATCTTTGAAATAACTTTTTGAGTTTTTGCTATCAAACCAAATCATGTGAAGTTATTTTCTTCTCGATTAATATTGTTGGGCTTTCAACGGATTATCCTAATTCTAATTTTGTAGAACAAAAAAAGAAAAAACCTAAAAATTCTGAGTGGTGACAGAAGGAGCTAGGAACTTGGAATTTGTGTAATAGAAAAAACATCCCAATAATCAGGAAACAGTGGATCCAATCACGGATCAGACGGATGCATGTGCCGTTTGAGATTTACATAAAATCCATCGGACATGAATTATAATCTTTGTTTAATGACATTAAACTTCTAATCATTCACAGAAAGTCCTTCAATTCAACGCCCCGTCGGTGTTCATTGTTCAGACAAATCTCTCCATTGTCTCTTCTTCTTCTTCCTTTCTTGGCTGTTCCTTATCTATCACCACCATGAATTGAATTGAATTGAATTGAATTGAATTGAACTGAATTGAATCGAATTCATCGCCATTACCCATTACTGTTCTCTTCTTCTTCTTCTTCTTCTTCTACCTCTTCCCTCCATGATTGTCCCATTTTCTGTCCCACCTCTTTGATTTCTGATCTTGCTGACATAATTGAATTGCAGGAGACGAGGTGGAGGAGAGAGCTGTTGGATAG

mRNA sequence

ATGAAGTCTGATGGAACCATGCCAGATTTGTTCTGCTACAACACTTCCCTTAGGTGCCTTTGCAAGCATAATCTTAAGAAAAATCCTTCAGGTCTTGTGCCTGAAGCATTGAATGTGATGATGGAAATGAGATCCTATATGATTGCCCCAAACTCTCAATCAGTTGTAATGTATTGTTGTCATGTCTGGGGCACGGGATTGTGGACGACATGGTTGATCCCGGATCGAAAATTCTACTTTGATTTGATTGGTATTCTGTGTGGAGCTGAGAGAGCAAGTTATGCACTTGAGCTGTTCGAGAAAATGAAAAGAAGCTCATTGGGAGGTTATAGTCCAGTTTATGATGTGCTCATACCAAAGCTTTGCAGAGGAGGTGATTTTGAAATGGGCAGGCAACTGTGGGAGGAGGCCATGGCTATGGGTCTCAAGCTTGGGTGCTCAGTGAGGTTTTCAAGCCAACAAGAAAGATTCATAGCAAAATTCTTGAGGAATACAACAGAGGCTGAGAAGCAAAACGAAGCTGCAACTGACAAAACCATAGCGATGGGCAAGAGAAGAGACGAGGTGGAGGAGAGAGCTGTTGGATAG

Coding sequence (CDS)

ATGAAGTCTGATGGAACCATGCCAGATTTGTTCTGCTACAACACTTCCCTTAGGTGCCTTTGCAAGCATAATCTTAAGAAAAATCCTTCAGGTCTTGTGCCTGAAGCATTGAATGTGATGATGGAAATGAGATCCTATATGATTGCCCCAAACTCTCAATCAGTTGTAATGTATTGTTGTCATGTCTGGGGCACGGGATTGTGGACGACATGGTTGATCCCGGATCGAAAATTCTACTTTGATTTGATTGGTATTCTGTGTGGAGCTGAGAGAGCAAGTTATGCACTTGAGCTGTTCGAGAAAATGAAAAGAAGCTCATTGGGAGGTTATAGTCCAGTTTATGATGTGCTCATACCAAAGCTTTGCAGAGGAGGTGATTTTGAAATGGGCAGGCAACTGTGGGAGGAGGCCATGGCTATGGGTCTCAAGCTTGGGTGCTCAGTGAGGTTTTCAAGCCAACAAGAAAGATTCATAGCAAAATTCTTGAGGAATACAACAGAGGCTGAGAAGCAAAACGAAGCTGCAACTGACAAAACCATAGCGATGGGCAAGAGAAGAGACGAGGTGGAGGAGAGAGCTGTTGGATAG

Protein sequence

MKSDGTMPDLFCYNTSLRCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSQSVVMYCCHVWGTGLWTTWLIPDRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLKLGCSVRFSSQQERFIAKFLRNTTEAEKQNEAATDKTIAMGKRRDEVEERAVG
Homology
BLAST of Carg18204 vs. NCBI nr
Match: KAG7021531.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 405.6 bits (1041), Expect = 2.4e-109
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0

Query: 1   MKSDGTMPDLFCYNTSLRCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSQSVVMYCC 60
           MKSDGTMPDLFCYNTSLRCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSQSVVMYCC
Sbjct: 1   MKSDGTMPDLFCYNTSLRCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSQSVVMYCC 60

Query: 61  HVWGTGLWTTWLIPDRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPK 120
           HVWGTGLWTTWLIPDRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPK
Sbjct: 61  HVWGTGLWTTWLIPDRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPK 120

Query: 121 LCRGGDFEMGRQLWEEAMAMGLKLGCSVRFSSQQERFIAKFLRNTTEAEKQNEAATDKTI 180
           LCRGGDFEMGRQLWEEAMAMGLKLGCSVRFSSQQERFIAKFLRNTTEAEKQNEAATDKTI
Sbjct: 121 LCRGGDFEMGRQLWEEAMAMGLKLGCSVRFSSQQERFIAKFLRNTTEAEKQNEAATDKTI 180

Query: 181 AMGKRRDEVEERAVG 196
           AMGKRRDEVEERAVG
Sbjct: 181 AMGKRRDEVEERAVG 195

BLAST of Carg18204 vs. NCBI nr
Match: KAG6587555.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 270.0 bits (689), Expect = 1.6e-68
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0

Query: 64  GTGLWTTWLIPDRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCR 123
           GTGLWTTWLIPDRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCR
Sbjct: 85  GTGLWTTWLIPDRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCR 144

Query: 124 GGDFEMGRQLWEEAMAMGLKLGCSVRFSSQQERFIAKFLRNTTEAEKQNEAATDKTIAMG 183
           GGDFEMGRQLWEEAMAMGLKLGCSVRFSSQQERFIAKFLRNTTEAEKQNEAATDKTIAMG
Sbjct: 145 GGDFEMGRQLWEEAMAMGLKLGCSVRFSSQQERFIAKFLRNTTEAEKQNEAATDKTIAMG 204

Query: 184 KRRDEVEERAVG 196
           KRRDEVEERAVG
Sbjct: 205 KRRDEVEERAVG 216

BLAST of Carg18204 vs. NCBI nr
Match: XP_023516447.1 (pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 233.8 bits (595), Expect = 1.3e-57
Identity = 133/239 (55.65%), Postives = 150/239 (62.76%), Query Frame = 0

Query: 1   MKSDGTMPDLFCYNTSLRCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSQS--VVMY 60
           MKSDGTMPDLF +NT LRCLC+ NLKKNPSGLVPEALNVMMEMRSY IAPNS S  +++ 
Sbjct: 254 MKSDGTMPDLFSFNTFLRCLCEQNLKKNPSGLVPEALNVMMEMRSYNIAPNSISYNILLS 313

Query: 61  C----------CHV----------------------------WGTG------LWTTWLIP 120
           C          C +                            +G G      +    LIP
Sbjct: 314 CLGRARRVKESCRILETMKRTGCRPDCISYYLVARVLFLSGRFGKGCRIVEEMIEEGLIP 373

Query: 121 DRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLW 180
           DRKFY+DLIGILCG E   YALELFEKMKRSSLGGY PVYDVLIPKLCRGGDFEMGRQLW
Sbjct: 374 DRKFYYDLIGILCGVESEKYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGDFEMGRQLW 433

Query: 181 EEAMAMGLKLGCS--------VRFSSQQERFIAKFLRNTTEAEKQNEAATDKTIAMGKR 186
           EEAMAMGL L CS         +      +   + L  ++ AEKQN+AATDK+ A GK+
Sbjct: 434 EEAMAMGLTLRCSSDVLDPSITKVFKPTRKIDNQGLEESSRAEKQNKAATDKSKARGKK 492

BLAST of Carg18204 vs. NCBI nr
Match: KAG6589519.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 233.0 bits (593), Expect = 2.1e-57
Identity = 134/239 (56.07%), Postives = 149/239 (62.34%), Query Frame = 0

Query: 1   MKSDGTMPDLFCYNTSLRCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSQS--VVMY 60
           MKSDGTMPDLF YNT LRCL + NLKKNPSGLVPEALNVMMEMRSY IAPNS S  +++ 
Sbjct: 254 MKSDGTMPDLFSYNTFLRCLSEQNLKKNPSGLVPEALNVMMEMRSYSIAPNSISYNILLS 313

Query: 61  C----------CHV----------------------------WGTG------LWTTWLIP 120
           C          C +                            +G G      +    LIP
Sbjct: 314 CLGRARRVKESCRILETMKRTGCRPDCISYYLVARVLFLSGRFGKGCRIVEEMIEEGLIP 373

Query: 121 DRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLW 180
           DRKFY+DLIGILCG E   YALELFEKMKRSSLGGY PVYDVLIPKLCRGGDFEMGRQLW
Sbjct: 374 DRKFYYDLIGILCGVESEKYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGDFEMGRQLW 433

Query: 181 EEAMAMGLKLGCS--------VRFSSQQERFIAKFLRNTTEAEKQNEAATDKTIAMGKR 186
           EEAMAMGL L CS         +      +   + L  ++ AEKQN+AATDK+ A GKR
Sbjct: 434 EEAMAMGLTLRCSSDVLDPSITKVFKPTRKIDNQNLEESSRAEKQNKAATDKSKARGKR 492

BLAST of Carg18204 vs. NCBI nr
Match: XP_022921576.1 (pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Cucurbita moschata])

HSP 1 Score: 233.0 bits (593), Expect = 2.1e-57
Identity = 134/239 (56.07%), Postives = 149/239 (62.34%), Query Frame = 0

Query: 1   MKSDGTMPDLFCYNTSLRCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSQS--VVMY 60
           MKSDGTMPDLF YNT LRCL + NLKKNPSGLVPEALNVMMEMRSY IAPNS S  +++ 
Sbjct: 254 MKSDGTMPDLFSYNTFLRCLSEQNLKKNPSGLVPEALNVMMEMRSYSIAPNSISYNILLS 313

Query: 61  C----------CHV----------------------------WGTG------LWTTWLIP 120
           C          C +                            +G G      +    LIP
Sbjct: 314 CLGRARRVKESCRILETMKRTGCRPDCISYYLVARVLFLSGRFGKGCRIVEEMIEEGLIP 373

Query: 121 DRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLW 180
           DRKFY+DLIGILCG E   YALELFEKMKRSSLGGY PVYDVLIPKLCRGGDFEMGRQLW
Sbjct: 374 DRKFYYDLIGILCGVESEKYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGDFEMGRQLW 433

Query: 181 EEAMAMGLKLGCS--------VRFSSQQERFIAKFLRNTTEAEKQNEAATDKTIAMGKR 186
           EEAMAMGL L CS         +      +   + L  ++ AEKQN+AATDK+ A GKR
Sbjct: 434 EEAMAMGLTLRCSSDVLDPSITKVFKPTRKIDNQNLEESSRAEKQNKAATDKSKARGKR 492

BLAST of Carg18204 vs. ExPASy Swiss-Prot
Match: Q9FLJ6 (Pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g61370 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 3.7e-44
Identity = 96/226 (42.48%), Postives = 127/226 (56.19%), Query Frame = 0

Query: 1   MKSDGTMPDLFCYNTSLRCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSQSV----- 60
           MKS G  PDLFC+N+ L CLC+ N+ +NPSGLVPEALN+M+EMRSY I P S S      
Sbjct: 234 MKSAGITPDLFCFNSLLTCLCERNVNRNPSGLVPEALNIMLEMRSYKIQPTSMSYNILLS 293

Query: 61  -----------------------------------VMYCCHVWGTG------LWTTWLIP 120
                                              V+Y    +G G      +      P
Sbjct: 294 CLGRTRRVRESCQILEQMKRSGCDPDTGSYYFVVRVLYLTGRFGKGNQIVDEMIERGFRP 353

Query: 121 DRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLW 180
           +RKFY+DLIG+LCG ER ++AL+LFEKMKRSS+GGY  VYD+LIPKLC+GG+FE GR+LW
Sbjct: 354 ERKFYYDLIGVLCGVERVNFALQLFEKMKRSSVGGYGQVYDLLIPKLCKGGNFEKGRELW 413

BLAST of Carg18204 vs. ExPASy Swiss-Prot
Match: Q9FME4 (Pentatricopeptide repeat-containing protein PNM1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PNM1 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.5e-08
Identity = 53/225 (23.56%), Postives = 89/225 (39.56%), Query Frame = 0

Query: 13  YNTSLRCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSQS---VVMYCCHVWGT---- 72
           YN  L C+CK   KK+P  L PE   V++EM    +  N+++   ++   C +  T    
Sbjct: 283 YNMMLDCVCKLCRKKDPFKLQPEVEKVLLEMEFRGVPRNTETFNVLINNLCKIRRTEEAM 342

Query: 73  ------GLW------TTWLI-----------------------------PDRKFYFDLIG 132
                 G W       T+L+                              ++K Y+  + 
Sbjct: 343 TLFGRMGEWGCQPDAETYLVLIRSLYQAARIGEGDEMIDKMKSAGYGELLNKKEYYGFLK 402

Query: 133 ILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLKL 190
           ILCG ER  +A+ +F+ MK +        YD+L+ K+C          L++EA   G+ +
Sbjct: 403 ILCGIERLEHAMSVFKSMKANGCKPGIKTYDLLMGKMCANNQLTRANGLYKEAAKKGIAV 462

BLAST of Carg18204 vs. ExPASy Swiss-Prot
Match: Q9M302 (Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana OX=3702 GN=At3g48810 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.2e-06
Identity = 47/172 (27.33%), Postives = 63/172 (36.63%), Query Frame = 0

Query: 1   MKSDGTMPDLFCYNTSLRCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSQSVVMYCC 60
           MK DG  P++F YN  L+ LCK+N        V  A  +++EM +    P++ S      
Sbjct: 172 MKRDGFEPNVFTYNVLLKALCKNN-------KVDGAKKLLVEMSNKGCCPDAVSYTTVIS 231

Query: 61  HVWGTGL------WTTWLIPDRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVY 120
            +   GL            P    Y  LI  LC       A EL  +M    +      Y
Sbjct: 232 SMCEVGLVKEGRELAERFEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISY 291

Query: 121 DVLIPKLCRGGDFEMGRQLWEEAMAMGLKLGCSVRFSSQQERFIAKFLRNTT 167
             LI  LC  G  E+        +   LK GC     +        FLR TT
Sbjct: 292 STLINVLCNSGQIELAFSF----LTQMLKRGCHPNIYTLSSLVKGCFLRGTT 332

BLAST of Carg18204 vs. ExPASy Swiss-Prot
Match: Q9SR00 (Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g04760 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 7.5e-05
Identity = 39/152 (25.66%), Postives = 60/152 (39.47%), Query Frame = 0

Query: 1   MKSDGTMPDLFCYNTSLRCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSQSVVMYCC 60
           M S G  PD+F YNT +R +CK        G+V  A  ++  +      P+  S  +   
Sbjct: 254 MLSRGLKPDMFTYNTIIRGMCK-------EGMVDRAFEMVRNLELKGCEPDVISYNILLR 313

Query: 61  HVWGTGLW-----------TTWLIPDRKFYFDLIGILCGAERASYALELFEKMKRSSLGG 120
            +   G W           +    P+   Y  LI  LC   +   A+ L + MK   L  
Sbjct: 314 ALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTP 373

Query: 121 YSPVYDVLIPKLCRGGDFEMGRQLWEEAMAMG 142
            +  YD LI   CR G  ++  +  E  ++ G
Sbjct: 374 DAYSYDPLIAAFCREGRLDVAIEFLETMISDG 398

BLAST of Carg18204 vs. ExPASy Swiss-Prot
Match: Q9CAN6 (Pentatricopeptide repeat-containing protein At1g63070, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g63070 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.3e-04
Identity = 32/147 (21.77%), Postives = 68/147 (46.26%), Query Frame = 0

Query: 1   MKSDGTMPDLFCYNTSLRCLCKHNLKKNPSGLVPEAL--NV---MMEMRSYMIAPNSQSV 60
           M++ G  PD+F YN  + CLC +    + S L+ + L  N+   ++   + + A   +  
Sbjct: 276 METKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGK 335

Query: 61  VMYCCHVWGTGLWTTWLIPDRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYD 120
           ++    ++   + +    PD   Y  LI   C  +R    +E+F +M +  L G +  Y 
Sbjct: 336 LVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYT 395

Query: 121 VLIPKLCRGGDFEMGRQLWEEAMAMGL 143
            LI    +  D +  + ++++ ++ G+
Sbjct: 396 TLIHGFFQARDCDNAQMVFKQMVSDGV 422

BLAST of Carg18204 vs. ExPASy TrEMBL
Match: A0A6J1E1S0 (pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111429800 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 1.0e-57
Identity = 134/239 (56.07%), Postives = 149/239 (62.34%), Query Frame = 0

Query: 1   MKSDGTMPDLFCYNTSLRCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSQS--VVMY 60
           MKSDGTMPDLF YNT LRCL + NLKKNPSGLVPEALNVMMEMRSY IAPNS S  +++ 
Sbjct: 254 MKSDGTMPDLFSYNTFLRCLSEQNLKKNPSGLVPEALNVMMEMRSYSIAPNSISYNILLS 313

Query: 61  C----------CHV----------------------------WGTG------LWTTWLIP 120
           C          C +                            +G G      +    LIP
Sbjct: 314 CLGRARRVKESCRILETMKRTGCRPDCISYYLVARVLFLSGRFGKGCRIVEEMIEEGLIP 373

Query: 121 DRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLW 180
           DRKFY+DLIGILCG E   YALELFEKMKRSSLGGY PVYDVLIPKLCRGGDFEMGRQLW
Sbjct: 374 DRKFYYDLIGILCGVESEKYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGDFEMGRQLW 433

Query: 181 EEAMAMGLKLGCS--------VRFSSQQERFIAKFLRNTTEAEKQNEAATDKTIAMGKR 186
           EEAMAMGL L CS         +      +   + L  ++ AEKQN+AATDK+ A GKR
Sbjct: 434 EEAMAMGLTLRCSSDVLDPSITKVFKPTRKIDNQNLEESSRAEKQNKAATDKSKARGKR 492

BLAST of Carg18204 vs. ExPASy TrEMBL
Match: A0A6J1BYQ1 (pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111006837 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 2.3e-57
Identity = 132/240 (55.00%), Postives = 148/240 (61.67%), Query Frame = 0

Query: 1   MKSDGTMPDLFCYNTSLRCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSQS--VVMY 60
           MKSDG MPDLFCYNT LRCLC+ NLKKNPSGLVPEALNVMMEMRSY I+PNS S  +++ 
Sbjct: 247 MKSDGAMPDLFCYNTFLRCLCEQNLKKNPSGLVPEALNVMMEMRSYKISPNSISYNILLS 306

Query: 61  C----------CHVWGT----GLWTTW------------------------------LIP 120
           C          C +  T    G    W                              LIP
Sbjct: 307 CLGRTRRVKESCRILETMKRSGCRADWVSYYLVARVLFLTGRFGKGRRIVDEMIDEGLIP 366

Query: 121 DRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLW 180
           D KFY+DLIGILCG ER +YALE+ +KMKRSSLGGY PVYDVLIPKLCRGGDFEMGRQLW
Sbjct: 367 DXKFYYDLIGILCGVERVNYALEMLDKMKRSSLGGYGPVYDVLIPKLCRGGDFEMGRQLW 426

Query: 181 EEAMAMGLKLGCS--------VRFSSQQERFIAKFLRNTTEAEKQNE-AATDKTIAMGKR 186
           EEAMAMGLKL CS         +      +  +K L     AEKQN+ AATD+  A GK+
Sbjct: 427 EEAMAMGLKLRCSREVLDPSITKVWLPTRKTDSKILEEVNGAEKQNQAAATDRPKAKGKK 486

BLAST of Carg18204 vs. ExPASy TrEMBL
Match: A0A6J1JIV3 (pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111484976 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 4.0e-57
Identity = 132/239 (55.23%), Postives = 147/239 (61.51%), Query Frame = 0

Query: 1   MKSDGTMPDLFCYNTSLRCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSQS--VVMY 60
           MKSDGTMPDLF YNT LRCLC+ NLKKNPSGLVPEALNVMMEMRSY IAPNS S  +++ 
Sbjct: 254 MKSDGTMPDLFSYNTFLRCLCEQNLKKNPSGLVPEALNVMMEMRSYSIAPNSISYNILLS 313

Query: 61  C----------CHV----------------------------WGTG------LWTTWLIP 120
           C          C +                            +G G      +    LIP
Sbjct: 314 CLGRARRVKESCRILETMKRTGCRPDCISYYLVARVLFLSGRFGKGCRIVEEMIEEGLIP 373

Query: 121 DRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLW 180
           DRKFY+DLIGILCG ER  YALELFEKMKRSSLGGY PVYDVLIPKLC GGDFEMGRQLW
Sbjct: 374 DRKFYYDLIGILCGVEREKYALELFEKMKRSSLGGYGPVYDVLIPKLCSGGDFEMGRQLW 433

Query: 181 EEAMAMGLKLGCS--------VRFSSQQERFIAKFLRNTTEAEKQNEAATDKTIAMGKR 186
            EAMAMG+ L CS         +      +   + L     AEKQN+AATDK+ A GK+
Sbjct: 434 GEAMAMGITLRCSSDVLDPSITKVFKPTRKIDNQNLEECNRAEKQNKAATDKSKARGKK 492

BLAST of Carg18204 vs. ExPASy TrEMBL
Match: A0A0A0LPF4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009920 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 8.2e-55
Identity = 123/232 (53.02%), Postives = 144/232 (62.07%), Query Frame = 0

Query: 1   MKSDGTMPDLFCYNTSLRCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSQS--VVMY 60
           MKSDGTMPDLFCYNT L+CLC+ N++KNPSGLVPE+LNVMMEMRSY I+PNS S  +++ 
Sbjct: 247 MKSDGTMPDLFCYNTFLKCLCEKNVEKNPSGLVPESLNVMMEMRSYKISPNSISYNILLS 306

Query: 61  C----------CHV----------------------------WGTG------LWTTWLIP 120
           C          C +                            +G G      +    L P
Sbjct: 307 CLCKTRRVKESCKILEMMKRTGCQPDCVSYYLMARVLFLTGRFGKGREIVDEMIEEGLTP 366

Query: 121 DRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLW 179
           DRKFY+DLIGILCG ER +YALELFEKMKRSSLGGY PVYDVLIPKLCRGG+FEMGRQLW
Sbjct: 367 DRKFYYDLIGILCGVERTNYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGEFEMGRQLW 426

BLAST of Carg18204 vs. ExPASy TrEMBL
Match: A0A5A7US52 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002610 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 9.1e-54
Identity = 122/232 (52.59%), Postives = 143/232 (61.64%), Query Frame = 0

Query: 1   MKSDGTMPDLFCYNTSLRCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSQS--VVMY 60
           MKSDGTMPDLF YNT L+CLC+ N++KNPSGLVPEALNVMMEMRSY IAPNS S  +++ 
Sbjct: 247 MKSDGTMPDLFSYNTFLKCLCEKNVEKNPSGLVPEALNVMMEMRSYKIAPNSISYNILLS 306

Query: 61  C----------CHV----------------------------WGTG------LWTTWLIP 120
           C          C +                            +G G      +    L P
Sbjct: 307 CLCKTRRVKESCRILEMMKRSGCRPDCVSYYLVARVLFLTGRFGKGREIVDEMIEEGLTP 366

Query: 121 DRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLW 179
           DRKFY++LIGILCG ER +YA+ELFEKMKRSSLGGY PVYDVLIPK+CRGGDFEMGRQLW
Sbjct: 367 DRKFYYELIGILCGVERTNYAVELFEKMKRSSLGGYGPVYDVLIPKVCRGGDFEMGRQLW 426

BLAST of Carg18204 vs. TAIR 10
Match: AT5G61370.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 179.5 bits (454), Expect = 2.6e-45
Identity = 96/226 (42.48%), Postives = 127/226 (56.19%), Query Frame = 0

Query: 1   MKSDGTMPDLFCYNTSLRCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSQSV----- 60
           MKS G  PDLFC+N+ L CLC+ N+ +NPSGLVPEALN+M+EMRSY I P S S      
Sbjct: 234 MKSAGITPDLFCFNSLLTCLCERNVNRNPSGLVPEALNIMLEMRSYKIQPTSMSYNILLS 293

Query: 61  -----------------------------------VMYCCHVWGTG------LWTTWLIP 120
                                              V+Y    +G G      +      P
Sbjct: 294 CLGRTRRVRESCQILEQMKRSGCDPDTGSYYFVVRVLYLTGRFGKGNQIVDEMIERGFRP 353

Query: 121 DRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLW 180
           +RKFY+DLIG+LCG ER ++AL+LFEKMKRSS+GGY  VYD+LIPKLC+GG+FE GR+LW
Sbjct: 354 ERKFYYDLIGVLCGVERVNFALQLFEKMKRSSVGGYGQVYDLLIPKLCKGGNFEKGRELW 413

BLAST of Carg18204 vs. TAIR 10
Match: AT5G60960.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-09
Identity = 53/225 (23.56%), Postives = 89/225 (39.56%), Query Frame = 0

Query: 13  YNTSLRCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSQS---VVMYCCHVWGT---- 72
           YN  L C+CK   KK+P  L PE   V++EM    +  N+++   ++   C +  T    
Sbjct: 283 YNMMLDCVCKLCRKKDPFKLQPEVEKVLLEMEFRGVPRNTETFNVLINNLCKIRRTEEAM 342

Query: 73  ------GLW------TTWLI-----------------------------PDRKFYFDLIG 132
                 G W       T+L+                              ++K Y+  + 
Sbjct: 343 TLFGRMGEWGCQPDAETYLVLIRSLYQAARIGEGDEMIDKMKSAGYGELLNKKEYYGFLK 402

Query: 133 ILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLKL 190
           ILCG ER  +A+ +F+ MK +        YD+L+ K+C          L++EA   G+ +
Sbjct: 403 ILCGIERLEHAMSVFKSMKANGCKPGIKTYDLLMGKMCANNQLTRANGLYKEAAKKGIAV 462

BLAST of Carg18204 vs. TAIR 10
Match: AT3G48810.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 52.8 bits (125), Expect = 3.7e-07
Identity = 47/172 (27.33%), Postives = 63/172 (36.63%), Query Frame = 0

Query: 1   MKSDGTMPDLFCYNTSLRCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSQSVVMYCC 60
           MK DG  P++F YN  L+ LCK+N        V  A  +++EM +    P++ S      
Sbjct: 172 MKRDGFEPNVFTYNVLLKALCKNN-------KVDGAKKLLVEMSNKGCCPDAVSYTTVIS 231

Query: 61  HVWGTGL------WTTWLIPDRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVY 120
            +   GL            P    Y  LI  LC       A EL  +M    +      Y
Sbjct: 232 SMCEVGLVKEGRELAERFEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISY 291

Query: 121 DVLIPKLCRGGDFEMGRQLWEEAMAMGLKLGCSVRFSSQQERFIAKFLRNTT 167
             LI  LC  G  E+        +   LK GC     +        FLR TT
Sbjct: 292 STLINVLCNSGQIELAFSF----LTQMLKRGCHPNIYTLSSLVKGCFLRGTT 332

BLAST of Carg18204 vs. TAIR 10
Match: AT3G04760.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 48.9 bits (115), Expect = 5.4e-06
Identity = 39/152 (25.66%), Postives = 60/152 (39.47%), Query Frame = 0

Query: 1   MKSDGTMPDLFCYNTSLRCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSQSVVMYCC 60
           M S G  PD+F YNT +R +CK        G+V  A  ++  +      P+  S  +   
Sbjct: 254 MLSRGLKPDMFTYNTIIRGMCK-------EGMVDRAFEMVRNLELKGCEPDVISYNILLR 313

Query: 61  HVWGTGLW-----------TTWLIPDRKFYFDLIGILCGAERASYALELFEKMKRSSLGG 120
            +   G W           +    P+   Y  LI  LC   +   A+ L + MK   L  
Sbjct: 314 ALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTP 373

Query: 121 YSPVYDVLIPKLCRGGDFEMGRQLWEEAMAMG 142
            +  YD LI   CR G  ++  +  E  ++ G
Sbjct: 374 DAYSYDPLIAAFCREGRLDVAIEFLETMISDG 398

BLAST of Carg18204 vs. TAIR 10
Match: AT1G63070.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 48.1 bits (113), Expect = 9.1e-06
Identity = 32/147 (21.77%), Postives = 68/147 (46.26%), Query Frame = 0

Query: 1   MKSDGTMPDLFCYNTSLRCLCKHNLKKNPSGLVPEAL--NV---MMEMRSYMIAPNSQSV 60
           M++ G  PD+F YN  + CLC +    + S L+ + L  N+   ++   + + A   +  
Sbjct: 276 METKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGK 335

Query: 61  VMYCCHVWGTGLWTTWLIPDRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYD 120
           ++    ++   + +    PD   Y  LI   C  +R    +E+F +M +  L G +  Y 
Sbjct: 336 LVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYT 395

Query: 121 VLIPKLCRGGDFEMGRQLWEEAMAMGL 143
            LI    +  D +  + ++++ ++ G+
Sbjct: 396 TLIHGFFQARDCDNAQMVFKQMVSDGV 422

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7021531.12.4e-109100.00Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
KAG6587555.11.6e-68100.00Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
XP_023516447.11.3e-5755.65pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Cucurbita ... [more]
KAG6589519.12.1e-5756.07Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
XP_022921576.12.1e-5756.07pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Cucurbita ... [more]
Match NameE-valueIdentityDescription
Q9FLJ63.7e-4442.48Pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Arabidop... [more]
Q9FME42.5e-0823.56Pentatricopeptide repeat-containing protein PNM1, mitochondrial OS=Arabidopsis t... [more]
Q9M3025.2e-0627.33Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana OX... [more]
Q9SR007.5e-0525.66Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidop... [more]
Q9CAN61.3e-0421.77Pentatricopeptide repeat-containing protein At1g63070, mitochondrial OS=Arabidop... [more]
Match NameE-valueIdentityDescription
A0A6J1E1S01.0e-5756.07pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Cucurbit... [more]
A0A6J1BYQ12.3e-5755.00pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Momordic... [more]
A0A6J1JIV34.0e-5755.23pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Cucurbit... [more]
A0A0A0LPF48.2e-5553.02Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009920 PE=4 SV=1[more]
A0A5A7US529.1e-5452.59Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
Match NameE-valueIdentityDescription
AT5G61370.12.6e-4542.48Pentatricopeptide repeat (PPR) superfamily protein [more]
AT5G60960.11.8e-0923.56Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G48810.13.7e-0727.33Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G04760.15.4e-0625.66Pentatricopeptide repeat (PPR-like) superfamily protein [more]
AT1G63070.19.1e-0621.77pentatricopeptide (PPR) repeat-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 158..178
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 170..195
NoneNo IPR availablePANTHERPTHR46128:SF33PPR CONTAINING PLANT-LIKE PROTEINcoord: 3..55
coord: 70..174
NoneNo IPR availablePANTHERPTHR46128MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1coord: 3..55
coord: 70..174
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 69..141
e-value: 3.6E-7
score: 31.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..64
e-value: 2.7E-5
score: 25.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 113..144
e-value: 8.1E-4
score: 17.4
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 82..105
e-value: 0.11
score: 12.8

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18204-RACarg18204-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding