Carg18179 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18179
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	transcription factor ILI6-like
Location	Carg_Chr11: 817594 .. 817942 (-)
RNA-Seq Expression	Carg18179
Synteny	Carg18179

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCACCAGAAGATCCAGATCTAGGCAATCAGGCAGCTCGAGAATCACCGACGACCAAATTAACGACCTCGTTTCCAAGTTGCAGCAGCTTCTTCCCGAGATTCGCCACAGACAATCCGATAAGGTCACTTCTTCTTTCCTCCTACGTACTTATTCTTGTTCTTGTTCTTATTCTGATGTTGTGTTTAAATGTATAGAGTTCAGCAGCACACGTGTTGCAAGAGACGTGTAATTACATAAGAAGCCTACATCGGGAGGTGGACGATCTAAGCGAGAGACTAGCGGAATTGTTGGCGACGTCGGATACGGCTCAAGCTGCCATTATTAGGAGTTTATTGATGCAATAG

mRNA sequence

ATGTCCACCAGAAGATCCAGATCTAGGCAATCAGGCAGCTCGAGAATCACCGACGACCAAATTAACGACCTCGTTTCCAAGTTGCAGCAGCTTCTTCCCGAGATTCGCCACAGACAATCCGATAAGAGTTCAGCAGCACACGTGTTGCAAGAGACGTGTAATTACATAAGAAGCCTACATCGGGAGGTGGACGATCTAAGCGAGAGACTAGCGGAATTGTTGGCGACGTCGGATACGGCTCAAGCTGCCATTATTAGGAGTTTATTGATGCAATAG

Coding sequence (CDS)

ATGTCCACCAGAAGATCCAGATCTAGGCAATCAGGCAGCTCGAGAATCACCGACGACCAAATTAACGACCTCGTTTCCAAGTTGCAGCAGCTTCTTCCCGAGATTCGCCACAGACAATCCGATAAGAGTTCAGCAGCACACGTGTTGCAAGAGACGTGTAATTACATAAGAAGCCTACATCGGGAGGTGGACGATCTAAGCGAGAGACTAGCGGAATTGTTGGCGACGTCGGATACGGCTCAAGCTGCCATTATTAGGAGTTTATTGATGCAATAG

Protein sequence

MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSDTAQAAIIRSLLMQ

Homology

[Close]

BLAST of Carg18179 vs. NCBI nr
Match: XP_022933575.1 (transcription factor ILI6-like [Cucurbita moschata] >XP_023531918.1 transcription factor ILI6-like [Cucurbita pepo subsp. pepo] >KAG6587530.1 Transcription factor PRE4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021506.1 Transcription factor PRE4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 167.5 bits (423), Expect = 5.2e-38
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLH 60
          MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLH
Sbjct: 1  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLH 60

Query: 61 REVDDLSERLAELLATSDTAQAAIIRSLLMQ 92
          REVDDLSERLAELLATSDTAQAAIIRSLLMQ
Sbjct: 61 REVDDLSERLAELLATSDTAQAAIIRSLLMQ 91

[Close]

BLAST of Carg18179 vs. NCBI nr
Match: XP_022973084.1 (transcription factor ILI6-like [Cucurbita maxima])

HSP 1 Score: 166.0 bits (419), Expect = 1.5e-37
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLH 60
          MS+RRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLH
Sbjct: 1  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLH 60

Query: 61 REVDDLSERLAELLATSDTAQAAIIRSLLMQ 92
          REVDDLSERLAELLATSDTAQAAIIRSLLMQ
Sbjct: 61 REVDDLSERLAELLATSDTAQAAIIRSLLMQ 91

[Close]

BLAST of Carg18179 vs. NCBI nr
Match: XP_022135424.1 (transcription factor ILI6-like [Momordica charantia])

HSP 1 Score: 159.8 bits (403), Expect = 1.1e-35
Identity = 87/91 (95.60%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLH 60
          MS+RRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDK SAA+VLQETCNYIRSLH
Sbjct: 1  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAANVLQETCNYIRSLH 60

Query: 61 REVDDLSERLAELLATSDTAQAAIIRSLLMQ 92
          REVDDLSERL+ELLATSDTAQAAIIRSLLMQ
Sbjct: 61 REVDDLSERLSELLATSDTAQAAIIRSLLMQ 91

[Close]

BLAST of Carg18179 vs. NCBI nr
Match: XP_038880650.1 (transcription factor PRE3-like [Benincasa hispida])

HSP 1 Score: 155.6 bits (392), Expect = 2.0e-34
Identity = 85/91 (93.41%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLH 60
          MS+RRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRH QSDK SAA VLQETCNYIR+LH
Sbjct: 1  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHTQSDKVSAAKVLQETCNYIRNLH 60

Query: 61 REVDDLSERLAELLATSDTAQAAIIRSLLMQ 92
          REVDDLSERL+ELLATSDTAQAAIIRSLLMQ
Sbjct: 61 REVDDLSERLSELLATSDTAQAAIIRSLLMQ 91

[Close]

BLAST of Carg18179 vs. NCBI nr
Match: XP_008453188.1 (PREDICTED: transcription factor PRE3-like [Cucumis melo])

HSP 1 Score: 153.3 bits (386), Expect = 1.0e-33
Identity = 86/92 (93.48%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 1  MSTRRSRSRQSGSSR-ITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSL 60
          MS+RRSRSRQSGSSR ITDDQINDLVSKLQQLLPEIRHRQSDK SAA VLQETCNYIR+L
Sbjct: 1  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRNL 60

Query: 61 HREVDDLSERLAELLATSDTAQAAIIRSLLMQ 92
          HREVDDLSERL+ELLATSDTAQAAIIRSLLMQ
Sbjct: 61 HREVDDLSERLSELLATSDTAQAAIIRSLLMQ 92

[Close]

BLAST of Carg18179 vs. ExPASy Swiss-Prot
Match: B8APB5 (Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.0e-29
Identity = 73/92 (79.35%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 1  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLH 60
          MS+RRSRSRQSGSSRITD+QI+DLVSKLQ LLPE R R +D+  ++ VLQETCNYIRSLH
Sbjct: 1  MSSRRSRSRQSGSSRITDEQISDLVSKLQDLLPEARLRSNDRVPSSRVLQETCNYIRSLH 60

Query: 61 REVDDLSERLAELLATSD--TAQAAIIRSLLM 91
          +EVDDLSERL+ELLATSD  +AQAAIIRSLLM
Sbjct: 61 QEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

[Close]

BLAST of Carg18179 vs. ExPASy Swiss-Prot
Match: Q0DUR2 (Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.0e-29
Identity = 73/92 (79.35%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 1  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLH 60
          MS+RRSRSRQSGSSRITD+QI+DLVSKLQ LLPE R R +D+  ++ VLQETCNYIRSLH
Sbjct: 1  MSSRRSRSRQSGSSRITDEQISDLVSKLQDLLPEARLRSNDRVPSSRVLQETCNYIRSLH 60

Query: 61 REVDDLSERLAELLATSD--TAQAAIIRSLLM 91
          +EVDDLSERL+ELLATSD  +AQAAIIRSLLM
Sbjct: 61 QEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

[Close]

BLAST of Carg18179 vs. ExPASy Swiss-Prot
Match: Q9CA64 (Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.7e-29
Identity = 74/93 (79.57%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 1  MSTRRSRSRQ-SGSSRITDDQINDLVSKLQQLLPEIR-HRQSDKSSAAHVLQETCNYIRS 60
          MS RRSRSRQ SG+SRI++DQINDL+ KLQQLLPE+R  R+SDK SAA VLQ+TCNYIR+
Sbjct: 1  MSGRRSRSRQSSGTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRN 60

Query: 61 LHREVDDLSERLAELLATSDTAQAAIIRSLLMQ 92
          LHREVDDLSERL+ELLA SDTAQAA+IRSLL Q
Sbjct: 61 LHREVDDLSERLSELLANSDTAQAALIRSLLTQ 93

[Close]

BLAST of Carg18179 vs. ExPASy Swiss-Prot
Match: Q8GW32 (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.0e-28
Identity = 71/92 (77.17%), Postives = 85/92 (92.39%), Query Frame = 0


Query: 1  MSTRR-SRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSL 60
          MS+RR SRSRQSGSSRI+DDQI+DLVSKLQ L+PE+R R+SDK SA+ VLQETCNYIR+L
Sbjct: 1  MSSRRSSRSRQSGSSRISDDQISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNL 60

Query: 61 HREVDDLSERLAELLATSD--TAQAAIIRSLL 90
          HREVDDLS+RL+ELLA++D  +A+AAIIRSLL
Sbjct: 61 HREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of Carg18179 vs. ExPASy Swiss-Prot
Match: Q338G6 (Transcription factor ILI7 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI7 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-25
Identity = 66/90 (73.33%), Postives = 76/90 (84.44%), Query Frame = 0


Query: 3  TRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLHRE 62
          +RRSRSR S ++RITD+QI DLVSKLQ LLPE R R +D+  +A VLQETC+YIRSLHRE
Sbjct: 2  SRRSRSRASSAARITDEQIGDLVSKLQALLPEARLRSNDRVPSARVLQETCSYIRSLHRE 61

Query: 63 VDDLSERLAELLATSD--TAQAAIIRSLLM 91
          VDDLSERLAELLA +D  TAQAA+IR LLM
Sbjct: 62 VDDLSERLAELLAAADVSTAQAAVIRGLLM 91

[Close]

BLAST of Carg18179 vs. ExPASy TrEMBL
Match: A0A6J1F586 (transcription factor ILI6-like OS=Cucurbita moschata OX=3662 GN=LOC111440959 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.5e-38
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLH 60
          MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLH
Sbjct: 1  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLH 60

Query: 61 REVDDLSERLAELLATSDTAQAAIIRSLLMQ 92
          REVDDLSERLAELLATSDTAQAAIIRSLLMQ
Sbjct: 61 REVDDLSERLAELLATSDTAQAAIIRSLLMQ 91

[Close]

BLAST of Carg18179 vs. ExPASy TrEMBL
Match: A0A6J1IDH8 (transcription factor ILI6-like OS=Cucurbita maxima OX=3661 GN=LOC111471611 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.3e-38
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLH 60
          MS+RRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLH
Sbjct: 1  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLH 60

Query: 61 REVDDLSERLAELLATSDTAQAAIIRSLLMQ 92
          REVDDLSERLAELLATSDTAQAAIIRSLLMQ
Sbjct: 61 REVDDLSERLAELLATSDTAQAAIIRSLLMQ 91

[Close]

BLAST of Carg18179 vs. ExPASy TrEMBL
Match: A0A6J1C1E4 (transcription factor ILI6-like OS=Momordica charantia OX=3673 GN=LOC111007381 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 5.2e-36
Identity = 87/91 (95.60%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLH 60
          MS+RRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDK SAA+VLQETCNYIRSLH
Sbjct: 1  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAANVLQETCNYIRSLH 60

Query: 61 REVDDLSERLAELLATSDTAQAAIIRSLLMQ 92
          REVDDLSERL+ELLATSDTAQAAIIRSLLMQ
Sbjct: 61 REVDDLSERLSELLATSDTAQAAIIRSLLMQ 91

[Close]

BLAST of Carg18179 vs. ExPASy TrEMBL
Match: A0A1S3BWE2 (transcription factor PRE3-like OS=Cucumis melo OX=3656 GN=LOC103493979 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 4.9e-34
Identity = 86/92 (93.48%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 1  MSTRRSRSRQSGSSR-ITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSL 60
          MS+RRSRSRQSGSSR ITDDQINDLVSKLQQLLPEIRHRQSDK SAA VLQETCNYIR+L
Sbjct: 1  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRNL 60

Query: 61 HREVDDLSERLAELLATSDTAQAAIIRSLLMQ 92
          HREVDDLSERL+ELLATSDTAQAAIIRSLLMQ
Sbjct: 61 HREVDDLSERLSELLATSDTAQAAIIRSLLMQ 92

[Close]

BLAST of Carg18179 vs. ExPASy TrEMBL
Match: A0A7N2MQ69 (BHLH domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.1e-33
Identity = 82/91 (90.11%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLH 60
          MS+RRSRSRQSG SRITDDQINDLVSKLQQLLPEIR R+SDK+SAA+VLQETCNYIR+LH
Sbjct: 1  MSSRRSRSRQSGGSRITDDQINDLVSKLQQLLPEIRDRRSDKASAANVLQETCNYIRNLH 60

Query: 61 REVDDLSERLAELLATSDTAQAAIIRSLLMQ 92
          REVDDLSERL+ELLAT+DTAQAAIIRSLLMQ
Sbjct: 61 REVDDLSERLSELLATTDTAQAAIIRSLLMQ 91

[Close]

BLAST of Carg18179 vs. TAIR 10
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 )

HSP 1 Score: 129.0 bits (323), Expect = 1.9e-30
Identity = 74/93 (79.57%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 1  MSTRRSRSRQ-SGSSRITDDQINDLVSKLQQLLPEIR-HRQSDKSSAAHVLQETCNYIRS 60
          MS RRSRSRQ SG+SRI++DQINDL+ KLQQLLPE+R  R+SDK SAA VLQ+TCNYIR+
Sbjct: 1  MSGRRSRSRQSSGTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRN 60

Query: 61 LHREVDDLSERLAELLATSDTAQAAIIRSLLMQ 92
          LHREVDDLSERL+ELLA SDTAQAA+IRSLL Q
Sbjct: 61 LHREVDDLSERLSELLANSDTAQAALIRSLLTQ 93

[Close]

BLAST of Carg18179 vs. TAIR 10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 125.6 bits (314), Expect = 2.1e-29
Identity = 71/92 (77.17%), Postives = 85/92 (92.39%), Query Frame = 0


Query: 1  MSTRR-SRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSL 60
          MS+RR SRSRQSGSSRI+DDQI+DLVSKLQ L+PE+R R+SDK SA+ VLQETCNYIR+L
Sbjct: 1  MSSRRSSRSRQSGSSRISDDQISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNL 60

Query: 61 HREVDDLSERLAELLATSD--TAQAAIIRSLL 90
          HREVDDLS+RL+ELLA++D  +A+AAIIRSLL
Sbjct: 61 HREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of Carg18179 vs. TAIR 10
Match: AT3G47710.1 (BANQUO 3 )

HSP 1 Score: 113.6 bits (283), Expect = 8.3e-26
Identity = 62/92 (67.39%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 1  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEI-RHRQSDKSSAAHVLQETCNYIRSL 60
          MS+R+SRSRQ+G+S ITD+QINDLV +L +LLPE+  +R+S K SA+ VLQETC+YIR+L
Sbjct: 1  MSSRKSRSRQTGASMITDEQINDLVLQLHRLLPELANNRRSGKVSASRVLQETCSYIRNL 60

Query: 61 HREVDDLSERLAELLATSDTAQAAIIRSLLMQ 92
           +EVDDLSERL++LL ++D+AQAA+IRSLLMQ
Sbjct: 61 SKEVDDLSERLSQLLESTDSAQAALIRSLLMQ 92

[Close]

BLAST of Carg18179 vs. TAIR 10
Match: AT3G28857.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 100.9 bits (250), Expect = 5.5e-22
Identity = 61/93 (65.59%), Postives = 75/93 (80.65%), Query Frame = 0


Query: 1  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEI-RHRQSDKSSAAHVLQETCNYIRSL 60
          MS RRSR + S +SRI+DDQ+ DLVSKL+Q LPEI   R+SDK SA+ VLQETCNYIR L
Sbjct: 1  MSNRRSR-QTSNASRISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKL 60

Query: 61 HREVDDLSERLAELL--ATSDTAQAAIIRSLLM 91
          HREVD+LS+RL++LL     D+ +AA+IRSLLM
Sbjct: 61 HREVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM 92

[Close]

BLAST of Carg18179 vs. TAIR 10
Match: AT5G39860.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 99.0 bits (245), Expect = 2.1e-21
Identity = 59/93 (63.44%), Postives = 79/93 (84.95%), Query Frame = 0


Query: 1  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEI-RHRQSDKSSAAHVLQETCNYIRSL 60
          MS RRSR + S + RI+D+Q+ DLVSKL+Q+LPEI + R+SDK+SA+ VLQETCNYIR+L
Sbjct: 1  MSNRRSR-QSSSAPRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRNL 60

Query: 61 HREVDDLSERLAELLAT--SDTAQAAIIRSLLM 91
          +REVD+LSERL++LL +   D+ +AA+IRSLLM
Sbjct: 61 NREVDNLSERLSQLLESVDEDSPEAAVIRSLLM 92

The following BLAST results are available for this feature:

BLAST of Carg18179 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933575.1	5.2e-38	100.00	transcription factor ILI6-like [Cucurbita moschata] >XP_023531918.1 transcriptio...	[more]
XP_022973084.1	1.5e-37	98.90	transcription factor ILI6-like [Cucurbita maxima]	[more]
XP_022135424.1	1.1e-35	95.60	transcription factor ILI6-like [Momordica charantia]	[more]
XP_038880650.1	2.0e-34	93.41	transcription factor PRE3-like [Benincasa hispida]	[more]
XP_008453188.1	1.0e-33	93.48	PREDICTED: transcription factor PRE3-like [Cucumis melo]	[more]

BLAST of Carg18179 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B8APB5	2.0e-29	79.35	Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV...	[more]
Q0DUR2	2.0e-29	79.35	Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 ...	[more]
Q9CA64	2.7e-29	79.57	Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1	[more]
Q8GW32	3.0e-28	77.17	Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1	[more]
Q338G6	1.1e-25	73.33	Transcription factor ILI7 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI7 PE=3 ...	[more]

BLAST of Carg18179 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F586	2.5e-38	100.00	transcription factor ILI6-like OS=Cucurbita moschata OX=3662 GN=LOC111440959 PE=...	[more]
A0A6J1IDH8	7.3e-38	98.90	transcription factor ILI6-like OS=Cucurbita maxima OX=3661 GN=LOC111471611 PE=4 ...	[more]
A0A6J1C1E4	5.2e-36	95.60	transcription factor ILI6-like OS=Momordica charantia OX=3673 GN=LOC111007381 PE...	[more]
A0A1S3BWE2	4.9e-34	93.48	transcription factor PRE3-like OS=Cucumis melo OX=3656 GN=LOC103493979 PE=4 SV=1	[more]
A0A7N2MQ69	1.1e-33	90.11	BHLH domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of Carg18179 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G74500.1	1.9e-30	79.57	activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1	[more]
AT1G26945.1	2.1e-29	77.17	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G47710.1	8.3e-26	67.39	BANQUO 3	[more]
AT3G28857.1	5.5e-22	65.59	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT5G39860.1	2.1e-21	63.44	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 56..83
None	No IPR available	PANTHER	PTHR46446:SF3	TRANSCRIPTION FACTOR PRE3	coord: 1..90
None	No IPR available	CDD	cd11442	bHLH_AtPRE_like	coord: 16..76 e-value: 3.24354E-20 score: 74.6471
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 19..60 e-value: 7.0E-7 score: 29.2
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 5..59 score: 11.32485
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 6..87 e-value: 1.7E-10 score: 43.0
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 19..77
IPR044293	Transcription factor PRE	PANTHER	PTHR46446	TRANSCRIPTION FACTOR PRE	coord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18179-RA	Carg18179-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0040008	regulation of growth
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity