Carg18153 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg18153
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionmannose-1-phosphate guanyltransferase alpha
LocationCarg_Chr11: 667766 .. 669841 (+)
RNA-Seq ExpressionCarg18153
SyntenyCarg18153
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCAGTGGATGGGAGAGATTTTGGGAGGTTCGTTAGGGAGGAGGCTGCTAATGACCTCCAAATTCTTGCCATTGATGACTGAATCAAACCCATTGCAAGGTACTGTTGTGTTAAGTGGCAGGTGGGTGGATGGGAGAGGTACTATGGAATGAATTTGTTAGAAGATTTAATGCTATTTTTGGTAATGCAGAATGCTGAAGGTAGATATGAAGATGGAGAAATTTTCAGTATAATCAGGTACTTTTTAGTGGTCCTTGCGCAAGATGAAAGAAAGAGAAAAAGACGCAATGAGTGCAGTAAACCAAGAAGATTCATATTGATTTCTTCCCCCGCCGTTCTTTATCCAAGAAATGTTGTTAAAATTCACCGCATAATCACCCAAATACTCAAACGCAACTTTTTGTATGAAAAAGACGCTGATGCAGTAAGAACATTTCAAAATTTATGAATCTTCAAGCGACAAATACAGAGGATTGAGTGAAAATTGGGTTTGTCTGAAGTGGGGCAACGCCAATTTTACAATCCTTGAAGATGGGCAGATCGATATCAGTGGGTGAGGTGAGTATCTATTCATCTCTCTTTCTCTACAATCTGGGCACTGTTCTTGTTTTCTTTGGGTTTGTTCTCAATTTTGATATCAATATCTTTGCTTCGATTAGCGATGGGAAGCGCAGAGGAGAAAGTTGTTGCCTCCTTCTCTAATCGTTTTGGATGGAAGTTCATCTGAATTCATTTTCTTCTCGATTCTGTTCATTTTTCTTAAATAAGCATCAAGAACTGAAGTTAGACACGTATCTATTATTATACTTATAATATAAAGTTTTGATGGAACAGGAGCTTATCATCACTGGTGATGTTTATATTCATCCTTCAGCTAAACTACATCCAACTGCTAAGGTATTATTATGTATGCTTCTGTCCCTTGGCATAATTACTTTCTCTCTTCTTTGAGATGGAACAGATTGGCCCTAATGTTTCGATATTTGCTAACTTTCTCATCTTGTCTTGTCAGGATAATGCAGTTGTGATAAATGCAATTGTTGGGTGGAAATCTTCCATTGGTGGAAAGAAACTTGGCCAAAGGATCAGATCCATTTACCCTTTTCAGATGAGAATGTGACGTTCGGACAAGCAAGCATGACCATGACATTCGCCAATCTATTTTCAATCGCAAAGGTTCATATTTTTGCACGATTTGCCTTTGATTTGTCCAAAAACAGGGTTAGATTTTTTTGGGAAAAAGAAAGGGTGCTATTTATGTAAAAATTAATAGATAAAAAAAAAGGAAATTACATTTTGAACTTTTAGGGATGGAAAACAGCAAGCAATTTGAAAAGGCATCCAATAATTGATTTATGATATATGCCGAAGACGAAGACTCCAGAGTCAAAAGAGCGAGTCTTCGTCAAGCTGCAGCAGCAGAGGAGGATAGCAGGAGGAGGCGAGACCATCATCGGAGGCTGAGGAAAATGGTTCACGCCAGGCTTGAAGACGCCACCGGTTTTAAGGCGGAGCTGATCGGAAGCGCCTGGACGGCCGCCGTTAAAGCTCACAAGCATGCAGAGAAGCCATTTCTCCTTGAAACTAGCAGCAGAGACTTTTCCATCATCAGTTTCCCCGGATCTTGGTCGGCGGAAGGCTGGTTCTCCGGTTCCGATTCATGTTTTGGAGAAACGAAGATCAACACCCAACTGTTTCCGTCCATCAGGAGCATCGGCGTTAACGATTATGCGCTCGTCAACTCCGCATTTCTCCACAGATTTGAAGCTATCTTAGGGAAGCTGATCAAGGAGGTACACTTTGCCCTAAATTTTCCACCTATTTCCTCGAATTTCGCTTCCTTAAAGTTCTTTGGATTCAGAGAATTACCATATATTCAATCCTTATCGACTTTTGTAATCATATAAATCAATGATGGAGCAATAGTGAAAGATGATAGAATAAAATAATAATAATAACTGATCGTAGAATAAAATAATAATAATAACCTTTTGCCTTCCCAAGATTTAATAATTATGTATGTATGTGTATGATAAATCCTTATGCAATAAGTTCGGATTTTATATAATTTT

mRNA sequence

ATGGAGCAGTGGATGGGAGAGATTTTGGGAGGTTCGTTAGGGAGGAGGCTGCTAATGACCTCCAAATTCTTGCCATTGATGACTGAATCAAACCCATTGCAAGGTACTAATGCTGAAGGTAGATATGAAGATGGAGAAATTTTCAGTATAATCAGTGGGGCAACGCCAATTTTACAATCCTTGAAGATGGGCAGATCGATATCAGTGGGTGAGGAGCTTATCATCACTGGTGATGTTTATATTCATCCTTCAGCTAAACTACATCCAACTGCTAAGGATAATGCAGTTGTGATAAATGCAATTGTTGGGTGGAAATCTTCCATTGGTGGAAAGAAACTTGGCCAAAGGATCAGATCCATTTACCCTTTTCAGATGAGAATGTGACGTTCGGACAAGCAAGCATGACCATGACATTCGCCAATCTATTTTCAATCGCAAAGGGATGGAAAACAGCAAGCAATTTGAAAAGGCATCCAATAATTGATTTATGATATATGCCGAAGACGAAGACTCCAGAGTCAAAAGAGCGAGTCTTCGTCAAGCTGCAGCAGCAGAGGAGGATAGCAGGAGGAGGCGAGACCATCATCGGAGGCTGAGGAAAATGGTTCACGCCAGGCTTGAAGACGCCACCGGTTTTAAGGCGGAGCTGATCGGAAGCGCCTGGACGGCCGCCGTTAAAGCTCACAAGCATGCAGAGAAGCCATTTCTCCTTGAAACTAGCAGCAGAGACTTTTCCATCATCAGTTTCCCCGGATCTTGGTCGGCGGAAGGCTGGTTCTCCGGTTCCGATTCATGTTTTGGAGAAACGAAGATCAACACCCAACTGTTTCCGTCCATCAGGAGCATCGGCGTTAACGATTATGCGCTCGTCAACTCCGCATTTCTCCACAGATTTGAAGCTATCTTAGGGAAGCTGATCAAGGAGGTACACTTTGCCCTAAATTTTCCACCTATTTCCTCGAATTTCGCTTCCTTAAAGTTCTTTGGATTCAGAGAATTACCATATATTCAATCCTTATCGACTTTTGTAATCATATAAATCAATGATGGAGCAATAGTGAAAGATGATAGAATAAAATAATAATAATAACTGATCGTAGAATAAAATAATAATAATAACCTTTTGCCTTCCCAAGATTTAATAATTATGTATGTATGTGTATGATAAATCCTTATGCAATAAGTTCGGATTTTATATAATTTT

Coding sequence (CDS)

ATGGAGCAGTGGATGGGAGAGATTTTGGGAGGTTCGTTAGGGAGGAGGCTGCTAATGACCTCCAAATTCTTGCCATTGATGACTGAATCAAACCCATTGCAAGGTACTAATGCTGAAGGTAGATATGAAGATGGAGAAATTTTCAGTATAATCAGTGGGGCAACGCCAATTTTACAATCCTTGAAGATGGGCAGATCGATATCAGTGGGTGAGGAGCTTATCATCACTGGTGATGTTTATATTCATCCTTCAGCTAAACTACATCCAACTGCTAAGGATAATGCAGTTGTGATAAATGCAATTGTTGGGTGGAAATCTTCCATTGGTGGAAAGAAACTTGGCCAAAGGATCAGATCCATTTACCCTTTTCAGATGAGAATGTGA

Protein sequence

MEQWMGEILGGSLGRRLLMTSKFLPLMTESNPLQGTNAEGRYEDGEIFSIISGATPILQSLKMGRSISVGEELIITGDVYIHPSAKLHPTAKDNAVVINAIVGWKSSIGGKKLGQRIRSIYPFQMRM
Homology
[Close]
BLAST of Carg18153 vs. NCBI nr
Match: KAG7021480.1 (hypothetical protein SDJN02_15205, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 257.3 bits (656), Expect = 6.9e-65
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0 

Query: 1   MEQWMGEILGGSLGRRLLMTSKFLPLMTESNPLQGTNAEGRYEDGEIFSIISGATPILQS 60
           MEQWMGEILGGSLGRRLLMTSKFLPLMTESNPLQGTNAEGRYEDGEIFSIISGATPILQS
Sbjct: 1   MEQWMGEILGGSLGRRLLMTSKFLPLMTESNPLQGTNAEGRYEDGEIFSIISGATPILQS 60

Query: 61  LKMGRSISVGEELIITGDVYIHPSAKLHPTAKDNAVVINAIVGWKSSIGGKKLGQRIRSI 120
           LKMGRSISVGEELIITGDVYIHPSAKLHPTAKDNAVVINAIVGWKSSIGGKKLGQRIRSI
Sbjct: 61  LKMGRSISVGEELIITGDVYIHPSAKLHPTAKDNAVVINAIVGWKSSIGGKKLGQRIRSI 120

Query: 121 YPFQMRM 128
           YPFQMRM
Sbjct: 121 YPFQMRM 127

[Close]
BLAST of Carg18153 vs. NCBI nr
Match: KAG6587496.1 (Mannose-1-phosphate guanyltransferase alpha-A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102.4 bits (254), Expect = 2.9e-18
Identity = 62/108 (57.41%), Postives = 62/108 (57.41%), Query Frame = 0 

Query: 63  MGRSISVGE---------------ELIITGDVYIHPSAKLHPTA---------------- 122
           MGRSISVGE               ELIITGDVYIHPSAKLHPTA                
Sbjct: 1   MGRSISVGERWEAQRRKLLPPSLIELIITGDVYIHPSAKLHPTAKIGPNVSIFANARIGA 60

Query: 123 ---------------KDNAVVINAIVGWKSSIGGKKLGQRIRSIYPFQ 125
                          KDNAVVINAIVGWKSSIGGKKLGQRIRSIYPFQ
Sbjct: 61  GSRLISCIVLDEVEIKDNAVVINAIVGWKSSIGGKKLGQRIRSIYPFQ 108

[Close]
BLAST of Carg18153 vs. NCBI nr
Match: KDO69803.1 (hypothetical protein CISIN_1g0152591mg, partial [Citrus sinensis])

HSP 1 Score: 69.3 bits (168), Expect = 2.7e-08
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 0 

Query: 75  ITGDVYIHPSAKLHPTAKDNAVVINAIVGWKSSIG 110
           I GDVY+HPSAK+HPTAK+NAVV NAIVGWKSSIG
Sbjct: 239 IIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIG 273

[Close]
BLAST of Carg18153 vs. NCBI nr
Match: GAY38944.1 (hypothetical protein CUMW_040560 [Citrus unshiu])

HSP 1 Score: 69.3 bits (168), Expect = 2.7e-08
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 0 

Query: 75  ITGDVYIHPSAKLHPTAKDNAVVINAIVGWKSSIG 110
           I GDVY+HPSAK+HPTAK+NAVV NAIVGWKSSIG
Sbjct: 292 IIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIG 326

[Close]
BLAST of Carg18153 vs. NCBI nr
Match: XP_022738096.1 (mannose-1-phosphate guanyltransferase alpha-B-like isoform X2 [Durio zibethinus])

HSP 1 Score: 66.2 bits (160), Expect = 2.3e-07
Identity = 29/35 (82.86%), Postives = 33/35 (94.29%), Query Frame = 0 

Query: 75  ITGDVYIHPSAKLHPTAKDNAVVINAIVGWKSSIG 110
           I GDVYIHPSAK+HP+AK+NAVV +AIVGWKSSIG
Sbjct: 298 IIGDVYIHPSAKVHPSAKENAVVFHAIVGWKSSIG 332

[Close]
BLAST of Carg18153 vs. ExPASy TrEMBL
Match: A0A067FR41 (NTP_transferase domain-containing protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0152591mg PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.3e-08
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 0 

Query: 75  ITGDVYIHPSAKLHPTAKDNAVVINAIVGWKSSIG 110
           I GDVY+HPSAK+HPTAK+NAVV NAIVGWKSSIG
Sbjct: 239 IIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIG 273

[Close]
BLAST of Carg18153 vs. ExPASy TrEMBL
Match: A0A2H5NFI8 (NTP_transferase domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_040560 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.3e-08
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 0 

Query: 75  ITGDVYIHPSAKLHPTAKDNAVVINAIVGWKSSIG 110
           I GDVY+HPSAK+HPTAK+NAVV NAIVGWKSSIG
Sbjct: 292 IIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIG 326

[Close]
BLAST of Carg18153 vs. ExPASy TrEMBL
Match: A0A6P5YDI6 (mannose-1-phosphate guanyltransferase alpha-B-like isoform X2 OS=Durio zibethinus OX=66656 GN=LOC111290863 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.1e-07
Identity = 29/35 (82.86%), Postives = 33/35 (94.29%), Query Frame = 0 

Query: 75  ITGDVYIHPSAKLHPTAKDNAVVINAIVGWKSSIG 110
           I GDVYIHPSAK+HP+AK+NAVV +AIVGWKSSIG
Sbjct: 298 IIGDVYIHPSAKVHPSAKENAVVFHAIVGWKSSIG 332

[Close]
BLAST of Carg18153 vs. ExPASy TrEMBL
Match: A0A6P6ASB0 (mannose-1-phosphate guanyltransferase alpha-like isoform X2 OS=Durio zibethinus OX=66656 GN=LOC111312043 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.1e-07
Identity = 29/35 (82.86%), Postives = 33/35 (94.29%), Query Frame = 0 

Query: 75  ITGDVYIHPSAKLHPTAKDNAVVINAIVGWKSSIG 110
           I GDVYIHPSAK+HP+AK+NAVV +AIVGWKSSIG
Sbjct: 297 IIGDVYIHPSAKVHPSAKENAVVFHAIVGWKSSIG 331

[Close]
BLAST of Carg18153 vs. ExPASy TrEMBL
Match: A0A6J0PDD4 (mannose-1-phosphate guanyltransferase alpha isoform X2 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105033234 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.4e-07
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 75  ITGDVYIHPSAKLHPTAKDNAVVINAIVGWKSSIG 110
           I GDVYIHPSAK+H TAK+NA+ IN+IVGWKSSIG
Sbjct: 298 IVGDVYIHPSAKVHVTAKENAIAINSIVGWKSSIG 332

[Close]
BLAST of Carg18153 vs. TAIR 10
Match: AT1G74910.1 (ADP-glucose pyrophosphorylase family protein )

HSP 1 Score: 54.3 bits (129), Expect = 8.3e-08
Identity = 31/67 (46.27%), Postives = 34/67 (50.75%), Query Frame = 0 

Query: 74  IITGDVYIHPSAKLHPTAK-------------------------------DNAVVINAIV 110
           I+ GDVYIHPSAK+HPTAK                               +NAVV NAIV
Sbjct: 296 IVIGDVYIHPSAKVHPTAKIGPNVSISANARVGPGVRLMSCIILDDVEIMENAVVTNAIV 355

[Close]
BLAST of Carg18153 vs. TAIR 10
Match: AT1G74910.3 (ADP-glucose pyrophosphorylase family protein )

HSP 1 Score: 54.3 bits (129), Expect = 8.3e-08
Identity = 31/67 (46.27%), Postives = 34/67 (50.75%), Query Frame = 0 

Query: 74  IITGDVYIHPSAKLHPTAK-------------------------------DNAVVINAIV 110
           I+ GDVYIHPSAK+HPTAK                               +NAVV NAIV
Sbjct: 296 IVIGDVYIHPSAKVHPTAKIGPNVSISANARVGPGVRLMSCIILDDVEIMENAVVTNAIV 355

[Close]
BLAST of Carg18153 vs. TAIR 10
Match: AT1G74910.2 (ADP-glucose pyrophosphorylase family protein )

HSP 1 Score: 54.3 bits (129), Expect = 8.3e-08
Identity = 31/67 (46.27%), Postives = 34/67 (50.75%), Query Frame = 0 

Query: 74  IITGDVYIHPSAKLHPTAK-------------------------------DNAVVINAIV 110
           I+ GDVYIHPSAK+HPTAK                               +NAVV NAIV
Sbjct: 296 IVIGDVYIHPSAKVHPTAKIGPNVSISANARVGPGVRLMSCIILDDVEIMENAVVTNAIV 355

[Close]
BLAST of Carg18153 vs. TAIR 10
Match: AT2G04650.1 (ADP-glucose pyrophosphorylase family protein )

HSP 1 Score: 53.1 bits (126), Expect = 1.8e-07
Identity = 30/66 (45.45%), Postives = 33/66 (50.00%), Query Frame = 0 

Query: 75  ITGDVYIHPSAKLHPTA-------------------------------KDNAVVINAIVG 110
           I GDVYIHPS KLHPTA                               K+NAVVIN+I+G
Sbjct: 288 IIGDVYIHPSVKLHPTAKIGPNVSISANVRVGPGVRLISCIILDDVEIKENAVVINSIIG 347

The following BLAST results are available for this feature:
BLAST of Carg18153 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7021480.16.9e-65100.00hypothetical protein SDJN02_15205, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6587496.12.9e-1857.41Mannose-1-phosphate guanyltransferase alpha-A, partial [Cucurbita argyrosperma s... [more]
KDO69803.12.7e-0885.71hypothetical protein CISIN_1g0152591mg, partial [Citrus sinensis][more]
GAY38944.12.7e-0885.71hypothetical protein CUMW_040560 [Citrus unshiu][more]
XP_022738096.12.3e-0782.86mannose-1-phosphate guanyltransferase alpha-B-like isoform X2 [Durio zibethinus][more]
BLAST of Carg18153 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg18153 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A067FR411.3e-0885.71NTP_transferase domain-containing protein (Fragment) OS=Citrus sinensis OX=2711 ... [more]
A0A2H5NFI81.3e-0885.71NTP_transferase domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_0405... [more]
A0A6P5YDI61.1e-0782.86mannose-1-phosphate guanyltransferase alpha-B-like isoform X2 OS=Durio zibethinu... [more]
A0A6P6ASB01.1e-0782.86mannose-1-phosphate guanyltransferase alpha-like isoform X2 OS=Durio zibethinus ... [more]
A0A6J0PDD42.4e-0780.00mannose-1-phosphate guanyltransferase alpha isoform X2 OS=Elaeis guineensis var.... [more]
BLAST of Carg18153 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G74910.18.3e-0846.27ADP-glucose pyrophosphorylase family protein [more]
AT1G74910.38.3e-0846.27ADP-glucose pyrophosphorylase family protein [more]
AT1G74910.28.3e-0846.27ADP-glucose pyrophosphorylase family protein [more]
AT2G04650.11.8e-0745.45ADP-glucose pyrophosphorylase family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18153-RACarg18153-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009058 biosynthetic process
cellular_component GO:0009507 chloroplast
molecular_function GO:0016779 nucleotidyltransferase activity