Carg18114 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18114
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Pentatricopeptide repeat (PPR) superfamily protein
Location	Carg_Chr11: 11589254 .. 11593504 (-)
RNA-Seq Expression	Carg18114
Synteny	Carg18114

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAAAAAGCAAGAAGCTTGAAGAGGAAGGGAAGTGGGCACTGAGCTTTGTGGTGGTACTTTCCAATATAATATACGATATTGTGGCACAATCAATGGGCGACTCGGTAAGTTGGGAATCCACTCACCTACTTGTGGAGGACTAACCCAAGTGAGAAGAGGTTACACACAACCCATCAGGTTTGGGACCCAGCGTCCTCGCTAGCACACCGCATAGTATCTAACTCTGTAACTGTCCAAGCTCACAGTTAGTTGTTGGGGACTCAGCTTTCTCGCTAACACACCGCCTGATATCACAGTTAGTTGTTGGGGACCCAGCGTTCTCGATGGCACACCACCTGGTATCTAGCTCCGATATTATTTATAACTGTCCAAACCCACAGTTAGTCGTTGGAGACTCAGCGTTCTCGCTGGCACACTGCCTAGTATCTAGCTCTGATATTATTTGTAACTGTCCAAACTCACAGTTAGATATTGTTTTCTTTGGCTTTTTCTTTCACAACTTGTGTCTAACTATAAGTAGGTTCTAATATTGTTCTCTTTGAGCTTTCACAACTTATGTCTAACTATAAGTAGGTTCTAATATTGTTCTCTTTGAGCTTTCCCTTTCACAACTTATGTCTAACTATCGAGGTACGTTCCTATTGTAATCTTTTTTTTTTATCAAAGTGGAGTTACACTGACCTAACAAGGGCGGGAATGGCTACAGAACGGTCGAAAACGTAAGAATCTATGTATTATTTGTATAACGAGCCGCTAAGCCGAGCCGCGGAATGCAACGGAGCCGCCGACGAAGCCGGAGTACCGAGCCGAGGAGCCGAGAAGGTCACTGGCGGCGCACGGCTTCTGGCGCGGGCTGGTGTCGCTGGTCTTGGGCCGGGATGGTACGCGGCCCAGAGTCGGTGTCCGGGCCGTACGTTGGCTGAGGCGAGCTCGCGGGATACCCGAAGAACCGACCCGCGATCCGCTGCTCTGTCTTCCTCACTCGAGGAGTCCCGACGAACCCTAATCGCGGAACCCGATTACTGTTGCCGATGAGACCGTCGTCGTCCGTTCGTCCTTGACGGTGCGTCTGTGCCTCTTGTTACGAAATACCCCGGCGTTGGTTCGCTCCTACCTAAGAACTCACAAAGGTCCGAAGCCTCGCGGCGTTATCGATTCCCCACCTCACTCTTTCTGCTCCTCTCTCACAGGTACAACAACGACTCAAAAGAAGTACGTCCTGTTACCAGACCTCGCCGGAAATCGCGAGATTTCCGGCGTTTCCTTTTTTTTTTTTTTTTTTTTTTCCTGGAACGCGTATCGTTACAAAGAGTTACGTTAAAAGAGGTGTGCATGAATGTGATGTTCATATTCATTATTTTTTTAATTGTATGTTGTGAATAAGCATCTTGAAGAATTTTAGTAATGTTTTCCTATTTAGTTAGAAATTTGCAGGCATTATCAAAGTACCCTAAAATTCCAATCAATGGAGGCCATGGTGAAAAAGTATCAGCAAAGATTCAGAAAGTTCAAAGATGAAATGGATCGCTGGGACGAGCTTCAAGTTCGCTTGATTTCACAGTTCACGAACGCTTCCTCCATCATTGGGAGGTTGCAGGTCAGCCTCAATTCTCATTTTATTATGCTGATAAATAATTTTTGTTTTCAGTTTCAAGATTAGAATCTTTGAAAAATTGTTGTCAGGTGCTTCAAGATCCTAACAATTATGGCAGTCTGTCTGGTATGGATGGCATTGTAGATGCGCTTTTGGCTAAGCAGATGGAATCGTTGCAACTCGTTTTCTCGTCTATTATAAAGACAATGTAAGTTCTCTTTTGTTTTTGTTTCAATTTTCAACTTGTACATAGCTCAACTCATTAAAACATATATCCTCGATCAAGATGTTAGAAGTTTATGTCGTTGAACAAGAAAATGACAATCATGAAATTTGTCCAAACAGTCCGACAAACGTTTTTGCTGTCTTGTTTACATCAGTGAAGAATCTGAATACTTTTCTCAGGGAAGAACTTGGGAATACTGTCCGTTCAATGGAGAAGATTTATCGTGATGGGAAGCAATTAATCAAAGGTGGTTCGAATCAGCCATCAACGAAACAACTGCAACAAAGAGTTGGATTAAAACCGAGTCTTGACGATTGCTTGAACGGGTTAAGGCTTCTATGTGACATGCACCGCTCTGAGTAAGAATTTTTCTGATCATGAAAGTGAGTTTTTTACTGGATGTGTATTTGGCTTCGTAATGAACTTGTTTCGATCTCTTTAGGTACCATCTTAAAGAATCTATGGTCTCAGCACTTCCAGAACTTTTCTGGAAACCCAGGTAACTTTATCCCATTGCTTTTGATAGTTGCATATGAAACATCCTTTTCTTGTAATGTTTCATATGAATTTATACATTATTAGATTCATTCCTTTTATCATCTTATTTTTGTTTTCTGCTTCCAAATTATGTTATTATTTATGGTCCATTTGTTTCCCTCTGAAAAAATGTGCATCTTGAATTGCTAGGAATCATAGTGCCCAAGATCTCAGTTCCTTACAGCAACTTTTGGTTGATCAGCCTAACATTCGGAAAGAGGAAGGTTAGTAGATGACTACTTTCGTTCGGCACTTCGTATTATGAACTTTAGTGATGAATGTGTAATCTATAAGTTTAGAAGTATCAAATCTGTGAATGAAAGAGGCCATTTAGTGTATACATTTGTTGGTAAGAAATTTAGTTTTTATGGAAAAAAAAATGGAAGAATGTATGGGTGCATACAAAAAGAACCCACTAAAGGACTTCAATCCGAGAGGACCAAATTAAGCTGTAACAGCCCAAGTCCACCGCTAGCAAATATTGTCCTCTTTGGGCTTTCCCTCTCAGGCTTCCCCTCAAGGTTTTTAAAACGCGTCTACTAGGGATAGGTTTCCACATCCTTTTAAGGAATGTTCAATCCACCTCCCTTAGTGGTCCAGCGTCCTCGTTAGCACACCTAATTAAGGCCGGTAATAGACACCAATAAGGATGAACTAAACCTAGCTACGCCCCAATCTTCCTCCCACAATCCATCGACCTCCCTAAAAATTCCGATGTTCCTCTCAAGCCAAGTTCTCACAATAAGTCAAAGGAACAAGTCTGCCACAAAGAAGCACGATCTTGAACTTGAATTGCTAGGATCTTCACTTACCATTACAGAGGCAAATCCTGCCTTGCTGTTTACTTTAATGGCTTTTGTTTGATCTAAAATCTCTTCTTCCCTGACAAGTATATTAAATATCATGTTTAGGGTCATATAGTTGTCCCATGAAAAGAATCGAGTCGAGGTGCATAGAAACTGACCAAACGATCACAAATATAAAAAAAAAACAGTATATTAAACCTATTGTCTAAAAAAAATTGCTTAGTTTGGCCATCAAGTGGTCTATCTGTTGTCAGTGGGGTAGAGCTAAAATTGTGTTGCTTTTGCATCCATTTGGTGCTTGGATTAACTGTATTGATATGCTGCATTTTGACATATGCAAAATGGCTTGATTCTTGATCCTCTTTTGTTGTAGTTGAATTTATCTTTGATACCATACTGGTTCCGGAAGCTAGCTAAAATGATGAGATAATCAAACAGTTCAAGAACATTTGATTGCATCTACATGCCTTCTTCTAAGGAAGAATTTGTATTCTTGCAATGGCAAGAAATTTTCAGGAAGAGGAAGCTTCAAGGATATTTACCTTGTGAGAATACAACACCAACAATATCAATTGAAAAGCAAAGTAGTGTCGGTGTTCATCTCTATTCCCCCCGGTAGTAGTGCATTTGACATTTTGGCCGATTATATGATTTAATCAGTTGAGTTATGTTGAGGTTAAATTTATGTTTTACTAGTGAGATTTTTTTATAATCTTTTTAGTTTTATGAACACACCATTAGTTTCAACAATATTCGTCGATGGTACATGACTACTACCACTGTGCCAAGCTTACTTTGACGTGTATTAAGATACGACATAGAGACGACTCATCTACCATTACCAACCGGTGTGGTATTGCTTCCCATCCTTCTTCACGATCGTAGGTAGTAGGTTAGCAGGTTAGAGGAAGGAGATGAAGTAAAAGAACAAGGATGTTTTTGCCTGTAGACATATAAATGTGAAGCCTTTTGATGTGAGTTTCTGAAATGCAATGGTAAGAATGAATATTGGTGCACTTGCACTCATCTCTTGTATTTCGACCCTTTTGATTATAATAGAACTTTTTGGCCATAATTTTCAGGG

mRNA sequence

ATGCTAAAAAGCAAGAAGCTTGAAGAGGAAGGGAAGTGGGCACTGAGCTTTGTGGTGTTAGAAATTTGCAGGCATTATCAAAGTACCCTAAAATTCCAATCAATGGAGGCCATGGTGAAAAAGTATCAGCAAAGATTCAGAAAGTTCAAAGATGAAATGGATCGCTGGGACGAGCTTCAAGTTCGCTTGATTTCACAGTTCACGAACGCTTCCTCCATCATTGGGAGGTTGCAGGTGCTTCAAGATCCTAACAATTATGGCAGTCTGTCTGGTATGGATGGCATTGTAGATGCGCTTTTGGCTAAGCAGATGGAATCGGAAGAACTTGGGAATACTGTCCGTTCAATGGAGAAGATTTATCGTGATGGGAAGCAATTAATCAAAGGTGGTTCGAATCAGCCATCAACGAAACAACTGCAACAAAGAGTTGGATTAAAACCGAGTCTTGACGATTGCTTGAACGGGTTAAGGCTTCTATGTGACATGCACCGCTCTGAGTACCATCTTAAAGAATCTATGGTCTCAGCACTTCCAGAACTTTTCTGGAAACCCAGGAATCATAGTGCCCAAGATCTCAGTTCCTTACAGCAACTTTTGGTTGATCAGCCTAACATTCGGAAAGAGGAAGTTGAATTTATCTTTGATACCATACTGGTTCCGGAAGCTAGCTAAAATGATGAGATAATCAAACAGTTCAAGAACATTTGATTGCATCTACATGCCTTCTTCTAAGGAAGAATTTGTATTCTTGCAATGGCAAGAAATTTTCAGGAAGAGGAAGCTTCAAGGATATTTACCTTGTGAGAATACAACACCAACAATATCAATTGAAAAGCAAAGTAGTGTCGGTGTTCATCTCTATTCCCCCCGGTAGTAGTGCATTTGACATTTTGGCCGATTATATGATTTAATCAGTTGAGTTATGTTGAGGTTAAATTTATGTTTTACTAGTGAGATTTTTTTATAATCTTTTTAGTTTTATGAACACACCATTAGTTTCAACAATATTCGTCGATGGTACATGACTACTACCACTGTGCCAAGCTTACTTTGACGTGTATTAAGATACGACATAGAGACGACTCATCTACCATTACCAACCGGTGTGGTATTGCTTCCCATCCTTCTTCACGATCGTAGGTAGTAGGTTAGCAGGTTAGAGGAAGGAGATGAAGTAAAAGAACAAGGATGTTTTTGCCTGTAGACATATAAATGTGAAGCCTTTTGATGTGAGTTTCTGAAATGCAATGGTAAGAATGAATATTGGTGCACTTGCACTCATCTCTTGTATTTCGACCCTTTTGATTATAATAGAACTTTTTGGCCATAATTTTCAGGG

Coding sequence (CDS)

ATGCTAAAAAGCAAGAAGCTTGAAGAGGAAGGGAAGTGGGCACTGAGCTTTGTGGTGTTAGAAATTTGCAGGCATTATCAAAGTACCCTAAAATTCCAATCAATGGAGGCCATGGTGAAAAAGTATCAGCAAAGATTCAGAAAGTTCAAAGATGAAATGGATCGCTGGGACGAGCTTCAAGTTCGCTTGATTTCACAGTTCACGAACGCTTCCTCCATCATTGGGAGGTTGCAGGTGCTTCAAGATCCTAACAATTATGGCAGTCTGTCTGGTATGGATGGCATTGTAGATGCGCTTTTGGCTAAGCAGATGGAATCGGAAGAACTTGGGAATACTGTCCGTTCAATGGAGAAGATTTATCGTGATGGGAAGCAATTAATCAAAGGTGGTTCGAATCAGCCATCAACGAAACAACTGCAACAAAGAGTTGGATTAAAACCGAGTCTTGACGATTGCTTGAACGGGTTAAGGCTTCTATGTGACATGCACCGCTCTGAGTACCATCTTAAAGAATCTATGGTCTCAGCACTTCCAGAACTTTTCTGGAAACCCAGGAATCATAGTGCCCAAGATCTCAGTTCCTTACAGCAACTTTTGGTTGATCAGCCTAACATTCGGAAAGAGGAAGTTGAATTTATCTTTGATACCATACTGGTTCCGGAAGCTAGCTAA

Protein sequence

MLKSKKLEEEGKWALSFVVLEICRHYQSTLKFQSMEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMESEELGNTVRSMEKIYRDGKQLIKGGSNQPSTKQLQQRVGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEAS

Homology

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BLAST of Carg18114 vs. NCBI nr
Match: KAG7022770.1 (hypothetical protein SDJN02_16506, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 439.9 bits (1130), Expect = 1.3e-119
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MLKSKKLEEEGKWALSFVVLEICRHYQSTLKFQSMEAMVKKYQQRFRKFKDEMDRWDELQ 60
           MLKSKKLEEEGKWALSFVVLEICRHYQSTLKFQSMEAMVKKYQQRFRKFKDEMDRWDELQ
Sbjct: 1   MLKSKKLEEEGKWALSFVVLEICRHYQSTLKFQSMEAMVKKYQQRFRKFKDEMDRWDELQ 60

Query: 61  VRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMESEELGNTVRSMEKIY 120
           VRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMESEELGNTVRSMEKIY
Sbjct: 61  VRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMESEELGNTVRSMEKIY 120

Query: 121 RDGKQLIKGGSNQPSTKQLQQRVGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPEL 180
           RDGKQLIKGGSNQPSTKQLQQRVGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPEL
Sbjct: 121 RDGKQLIKGGSNQPSTKQLQQRVGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPEL 180

Query: 181 FWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEAS 224
           FWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEAS
Sbjct: 181 FWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEAS 223

[Close]

BLAST of Carg18114 vs. NCBI nr
Match: XP_022928127.1 (uncharacterized protein At5g43822 isoform X3 [Cucurbita moschata])

HSP 1 Score: 360.9 bits (925), Expect = 7.8e-96
Identity = 187/201 (93.03%), Postives = 188/201 (93.53%), Query Frame = 0


Query: 35  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG 94
           MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG
Sbjct: 1   MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG 60

Query: 95  IVDALLAKQMES------------EELGNTVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 154
           IVDALLAKQMES            EELGN VRSMEKIYRDGKQLIKGGSNQPSTKQLQQR
Sbjct: 61  IVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 120

Query: 155 VGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQ 214
           VGLKPSL+DCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQ
Sbjct: 121 VGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQ 180

Query: 215 PNIRKEEVEFIFDTILVPEAS 224
           PNIRKEEVEFIFDTILVPEAS
Sbjct: 181 PNIRKEEVEFIFDTILVPEAS 201

[Close]

BLAST of Carg18114 vs. NCBI nr
Match: XP_022989465.1 (uncharacterized protein At5g43822 isoform X2 [Cucurbita maxima])

HSP 1 Score: 352.1 bits (902), Expect = 3.6e-93
Identity = 182/201 (90.55%), Postives = 186/201 (92.54%), Query Frame = 0


Query: 35  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG 94
           MEAMVKKYQQRFRKFKDEMD WDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG
Sbjct: 1   MEAMVKKYQQRFRKFKDEMDHWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG 60

Query: 95  IVDALLAKQMES------------EELGNTVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 154
           IVDALLAKQMES            EELGN VRSMEKIYRDGKQLIKGGSNQPSTKQLQQR
Sbjct: 61  IVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 120

Query: 155 VGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQ 214
           VGLKPSL+DCLNGLRLLCDMHRSEY+LKESMVSALP+LFWKPRNHSAQDLSSLQQLLVDQ
Sbjct: 121 VGLKPSLEDCLNGLRLLCDMHRSEYYLKESMVSALPQLFWKPRNHSAQDLSSLQQLLVDQ 180

Query: 215 PNIRKEEVEFIFDTILVPEAS 224
           PNIRKEEVEF+FD ILVPEAS
Sbjct: 181 PNIRKEEVEFMFDIILVPEAS 201

[Close]

BLAST of Carg18114 vs. NCBI nr
Match: XP_023529794.1 (uncharacterized protein At5g43822 [Cucurbita pepo subsp. pepo] >XP_023529795.1 uncharacterized protein At5g43822 [Cucurbita pepo subsp. pepo] >XP_023529796.1 uncharacterized protein At5g43822 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 342.8 bits (878), Expect = 2.2e-90
Identity = 181/201 (90.05%), Postives = 183/201 (91.04%), Query Frame = 0


Query: 35  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG 94
           MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDP NYGSLS   G
Sbjct: 1   MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPKNYGSLS---G 60

Query: 95  IVDALLAKQMES------------EELGNTVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 154
           IVDALLAKQMES             ELGN VRSMEKIYRDGKQLIKGGSNQPSTKQLQQR
Sbjct: 61  IVDALLAKQMESLQLVFSSIIKTMVELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 120

Query: 155 VGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQ 214
           VGLKPSL+DCLNGLRLLCDMHRSEYHLKESMVS+LPELFWKPRNHSAQDLSSLQQLLVDQ
Sbjct: 121 VGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSSLPELFWKPRNHSAQDLSSLQQLLVDQ 180

Query: 215 PNIRKEEVEFIFDTILVPEAS 224
           PNIRKEEVEFIFDTILVPEAS
Sbjct: 181 PNIRKEEVEFIFDTILVPEAS 198

[Close]

BLAST of Carg18114 vs. NCBI nr
Match: KAG6589056.1 (hypothetical protein SDJN03_17621, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 339.0 bits (868), Expect = 3.2e-89
Identity = 175/187 (93.58%), Postives = 175/187 (93.58%), Query Frame = 0


Query: 35  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG 94
           MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG
Sbjct: 1   MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG 60

Query: 95  IVDALLAKQMES------------EELGNTVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 154
           IVDALLAKQMES            EELGNTVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR
Sbjct: 61  IVDALLAKQMESLQLVFSSIIKTMEELGNTVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 120

Query: 155 VGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQ 210
           VGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQ
Sbjct: 121 VGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQ 180

[Close]

BLAST of Carg18114 vs. ExPASy Swiss-Prot
Match: Q6NPG7 (Uncharacterized protein At5g43822 OS=Arabidopsis thaliana OX=3702 GN=At5g43822 PE=2 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.3e-40
Identity = 96/199 (48.24%), Postives = 135/199 (67.84%), Query Frame = 0


Query: 35  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG 94
           MEA+++K+QQ+FRK K+EM++W+ LQVR +S F NASSII RLQ +Q+  +YG+L  + G
Sbjct: 1   MEAVIRKWQQKFRKGKEEMEKWEALQVRWVSLFRNASSIIQRLQEMQNHGSYGALRCLKG 60

Query: 95  IVDALLAKQM---ES---------EELGNTVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 154
           I DA++ +QM   ES         EE    V + EK++RDG QL      + S +++++R
Sbjct: 61  IEDAVVQQQMGQLESLLRSMKNVMEEFWGCVLTFEKLHRDGLQL---REIESSKRRVEER 120

Query: 155 VGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQ 214
           +G+KP + DCL GL +L DMH+SEYHLK S++S L  L  KP   S  DL++LQ L+VDQ
Sbjct: 121 IGVKPCITDCLEGLSILYDMHQSEYHLKSSILSVLSCLILKP---SPGDLNALQYLVVDQ 180

Query: 215 PNIRKEEVEFIFDTILVPE 222
           PNI K+EV+ IFD I   E
Sbjct: 181 PNIPKDEVQHIFDVIFAEE 193

[Close]

BLAST of Carg18114 vs. ExPASy TrEMBL
Match: A0A6J1EJ12 (uncharacterized protein At5g43822 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111435044 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 3.8e-96
Identity = 187/201 (93.03%), Postives = 188/201 (93.53%), Query Frame = 0


Query: 35  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG 94
           MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG
Sbjct: 1   MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG 60

Query: 95  IVDALLAKQMES------------EELGNTVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 154
           IVDALLAKQMES            EELGN VRSMEKIYRDGKQLIKGGSNQPSTKQLQQR
Sbjct: 61  IVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 120

Query: 155 VGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQ 214
           VGLKPSL+DCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQ
Sbjct: 121 VGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQ 180

Query: 215 PNIRKEEVEFIFDTILVPEAS 224
           PNIRKEEVEFIFDTILVPEAS
Sbjct: 181 PNIRKEEVEFIFDTILVPEAS 201

[Close]

BLAST of Carg18114 vs. ExPASy TrEMBL
Match: A0A6J1JMF9 (uncharacterized protein At5g43822 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111486514 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.8e-93
Identity = 182/201 (90.55%), Postives = 186/201 (92.54%), Query Frame = 0


Query: 35  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG 94
           MEAMVKKYQQRFRKFKDEMD WDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG
Sbjct: 1   MEAMVKKYQQRFRKFKDEMDHWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG 60

Query: 95  IVDALLAKQMES------------EELGNTVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 154
           IVDALLAKQMES            EELGN VRSMEKIYRDGKQLIKGGSNQPSTKQLQQR
Sbjct: 61  IVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 120

Query: 155 VGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQ 214
           VGLKPSL+DCLNGLRLLCDMHRSEY+LKESMVSALP+LFWKPRNHSAQDLSSLQQLLVDQ
Sbjct: 121 VGLKPSLEDCLNGLRLLCDMHRSEYYLKESMVSALPQLFWKPRNHSAQDLSSLQQLLVDQ 180

Query: 215 PNIRKEEVEFIFDTILVPEAS 224
           PNIRKEEVEF+FD ILVPEAS
Sbjct: 181 PNIRKEEVEFMFDIILVPEAS 201

[Close]

BLAST of Carg18114 vs. ExPASy TrEMBL
Match: A0A6J1EQT0 (uncharacterized protein At5g43822 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111435044 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 2.2e-88
Identity = 173/187 (92.51%), Postives = 174/187 (93.05%), Query Frame = 0


Query: 35  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG 94
           MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG
Sbjct: 1   MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG 60

Query: 95  IVDALLAKQMES------------EELGNTVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 154
           IVDALLAKQMES            EELGN VRSMEKIYRDGKQLIKGGSNQPSTKQLQQR
Sbjct: 61  IVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 120

Query: 155 VGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQ 210
           VGLKPSL+DCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQ
Sbjct: 121 VGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQ 180

[Close]

BLAST of Carg18114 vs. ExPASy TrEMBL
Match: A0A6J1EJF6 (uncharacterized protein At5g43822 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111435044 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 2.2e-88
Identity = 173/187 (92.51%), Postives = 174/187 (93.05%), Query Frame = 0


Query: 35  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG 94
           MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG
Sbjct: 1   MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG 60

Query: 95  IVDALLAKQMES------------EELGNTVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 154
           IVDALLAKQMES            EELGN VRSMEKIYRDGKQLIKGGSNQPSTKQLQQR
Sbjct: 61  IVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 120

Query: 155 VGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQ 210
           VGLKPSL+DCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQ
Sbjct: 121 VGLKPSLEDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQ 180

[Close]

BLAST of Carg18114 vs. ExPASy TrEMBL
Match: A0A6J1JQC0 (uncharacterized protein At5g43822 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486514 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 9.3e-87
Identity = 170/187 (90.91%), Postives = 173/187 (92.51%), Query Frame = 0


Query: 35  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG 94
           MEAMVKKYQQRFRKFKDEMD WDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG
Sbjct: 1   MEAMVKKYQQRFRKFKDEMDHWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG 60

Query: 95  IVDALLAKQMES------------EELGNTVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 154
           IVDALLAKQMES            EELGN VRSMEKIYRDGKQLIKGGSNQPSTKQLQQR
Sbjct: 61  IVDALLAKQMESLQLVFSSIIKTMEELGNIVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 120

Query: 155 VGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQ 210
           VGLKPSL+DCLNGLRLLCDMHRSEY+LKESMVSALP+LFWKPRNHSAQDLSSLQQLLVDQ
Sbjct: 121 VGLKPSLEDCLNGLRLLCDMHRSEYYLKESMVSALPQLFWKPRNHSAQDLSSLQQLLVDQ 180

[Close]

BLAST of Carg18114 vs. TAIR 10
Match: AT5G43822.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 167.9 bits (424), Expect = 9.0e-42
Identity = 96/199 (48.24%), Postives = 135/199 (67.84%), Query Frame = 0


Query: 35  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDG 94
           MEA+++K+QQ+FRK K+EM++W+ LQVR +S F NASSII RLQ +Q+  +YG+L  + G
Sbjct: 1   MEAVIRKWQQKFRKGKEEMEKWEALQVRWVSLFRNASSIIQRLQEMQNHGSYGALRCLKG 60

Query: 95  IVDALLAKQM---ES---------EELGNTVRSMEKIYRDGKQLIKGGSNQPSTKQLQQR 154
           I DA++ +QM   ES         EE    V + EK++RDG QL      + S +++++R
Sbjct: 61  IEDAVVQQQMGQLESLLRSMKNVMEEFWGCVLTFEKLHRDGLQL---REIESSKRRVEER 120

Query: 155 VGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQ 214
           +G+KP + DCL GL +L DMH+SEYHLK S++S L  L  KP   S  DL++LQ L+VDQ
Sbjct: 121 IGVKPCITDCLEGLSILYDMHQSEYHLKSSILSVLSCLILKP---SPGDLNALQYLVVDQ 180

Query: 215 PNIRKEEVEFIFDTILVPE 222
           PNI K+EV+ IFD I   E
Sbjct: 181 PNIPKDEVQHIFDVIFAEE 193

The following BLAST results are available for this feature:

BLAST of Carg18114 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022770.1	1.3e-119	100.00	hypothetical protein SDJN02_16506, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022928127.1	7.8e-96	93.03	uncharacterized protein At5g43822 isoform X3 [Cucurbita moschata]	[more]
XP_022989465.1	3.6e-93	90.55	uncharacterized protein At5g43822 isoform X2 [Cucurbita maxima]	[more]
XP_023529794.1	2.2e-90	90.05	uncharacterized protein At5g43822 [Cucurbita pepo subsp. pepo] >XP_023529795.1 u...	[more]
KAG6589056.1	3.2e-89	93.58	hypothetical protein SDJN03_17621, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Carg18114 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NPG7	1.3e-40	48.24	Uncharacterized protein At5g43822 OS=Arabidopsis thaliana OX=3702 GN=At5g43822 P...	[more]

BLAST of Carg18114 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EJ12	3.8e-96	93.03	uncharacterized protein At5g43822 isoform X3 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1JMF9	1.8e-93	90.55	uncharacterized protein At5g43822 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1EQT0	2.2e-88	92.51	uncharacterized protein At5g43822 isoform X1 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1EJF6	2.2e-88	92.51	uncharacterized protein At5g43822 isoform X2 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1JQC0	9.3e-87	90.91	uncharacterized protein At5g43822 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of Carg18114 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43822.1	9.0e-42	48.24	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 32..59
None	No IPR available	PANTHER	PTHR37904:SF2	OS10G0566900 PROTEIN	coord: 35..221
IPR029159	Casein Kinase 2 substrate	PFAM	PF15011	CK2S	coord: 41..190 e-value: 1.7E-33 score: 115.8
IPR038985	At5g43822-like	PANTHER	PTHR37904	OS10G0566900 PROTEIN	coord: 35..221

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18114-RA	Carg18114-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005635	nuclear envelope