Carg18102 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18102
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Pentatricopeptide repeat-containing protein
Location	Carg_Chr11: 11644592 .. 11645563 (-)
RNA-Seq Expression	Carg18102
Synteny	Carg18102

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAAGAGTTCGCCGGAGAGAGCATTTAATAATGAGTTTCTTGGCAACATCTCCGTCGCCGACGATTCTCGGTCCTCCGTACGAGTTACTGAGCGCCGGTGGGAAAGCATGTTGCCTGCGGCTAGGAAGGGCGGAGGAATATCGGAGAGTGATAGTGAGCCAAGGAACCTTAGCATCGAAGCGATTCAAGCGGTACAGTCGCTGAAGCGAGCCAAGGAAGATTTACAACAATTGGACCGAGTGTACGATTCCGAAGTTAAGGCGCTTATTGAAGTTCGATATGATGGCTGTTCTTCGCGAGCTCATTCGTCAGAACGAGTGTTCTTTGGCTCTTAAGGTGATGCATCTGCTTTAGATTTTTATGTTTATCCGTATCTTCGATTTATTAGCTACCGGAATTATTCCATATTGCACGATCAGTATCGATTGTTGAAGAATTATCGCAGCAATAGCGAGATATGGATTTCTGCTTATGGTAAATTCCTTCAATATTCCTTGCTGATATTTTGTATTACTTTACTGTCGATATTTGAGACTTCGGTTTTCGATGATGTTAGGAAGGAACACTGGTACAAGCCTCAGGTTTCGCTATATGCTGATATTATTACATTATAGGCTAGCAGTGGATTATTCGAACAAGTAAAAAATTATTCATTCCTATTTGAGAGCAGAAACTGACGTAGTGCATGATATTGACGGGTTTAATGCTCTTTTGAGAGCTTTGGTTAGTAATAATTTAGGTGAACTTGTGATTGAGTCCTATTACTTGATGAAAGAAGTAGGTTGCTAGCCGGATAAGACTTCATTCAGGATTGTCATAGAAGGACTGGAATCATCGGGAGAGGCTACTGGTTTAAGAATGTGAAGCAGGATGCACAAAAGATTTATGGTGAATCGCTCGAGTTTCTAGAGGAAGAAGACCCGCAGCTACAGCCATATCTATGCATTGAGCTGCTGATCGGGCTTTGA

mRNA sequence

ATGAATAAGAGTTCGCCGGAGAGAGCATTTAATAATGAGTTTCTTGGCAACATCTCCGTCGCCGACGATTCTCGGTCCTCCGTACGAGTTACTGAGCGCCGGTGGGAAAGCATGTTGCCTGCGGCTAGGAAGGGCGGAGGAATATCGGAGAGTGATAGTGAGCCAAGGAACCTTAGCATCGAAGCGATTCAAGCGGTACAGTCGCTGAAGCGAGCCAAGGAAGATTTACAACAATTGGACCGAGTGTACGATTCCGAAGTTAAGGCGCTTATTGAAGTTCGATATGATGGCTGTTCTTCGCGAGCTCATTCGTCAGAACGAGTCTACCGGAATTATTCCATATTGCACGATCAGTATCGATTGTTGAAGAATTATCGCAGCAATAGCGAGATATGGATTTCTGCTTATGGTAAATTCCTTCAATATTCCTTGCTGATATTTTGTATTACTTTACTGTCGATATTTGAGACTTCGGTTTTCGATGATGTTAGGAAGGAACACTGGTACAAGCCTCAGTGGATTATTCGAACAAAAACTGACGTAGTGCATGATATTGACGGGTTTAATGCTCTTTTGAGAGCTTTGGTTAGTAATAATTTAGGTGAACTTGTGATTGAGTCCTATTACTTGATGAAAGAAGATTGTCATAGAAGGACTGGAATCATCGGGAGAGGCTACTGGTTTAAGAATGTGAAGCAGGATGCACAAAAGATTTATGGTGAATCGCTCGAGTTTCTAGAGGAAGAAGACCCGCAGCTACAGCCATATCTATGCATTGAGCTGCTGATCGGGCTTTGA

Coding sequence (CDS)

ATGAATAAGAGTTCGCCGGAGAGAGCATTTAATAATGAGTTTCTTGGCAACATCTCCGTCGCCGACGATTCTCGGTCCTCCGTACGAGTTACTGAGCGCCGGTGGGAAAGCATGTTGCCTGCGGCTAGGAAGGGCGGAGGAATATCGGAGAGTGATAGTGAGCCAAGGAACCTTAGCATCGAAGCGATTCAAGCGGTACAGTCGCTGAAGCGAGCCAAGGAAGATTTACAACAATTGGACCGAGTGTACGATTCCGAAGTTAAGGCGCTTATTGAAGTTCGATATGATGGCTGTTCTTCGCGAGCTCATTCGTCAGAACGAGTCTACCGGAATTATTCCATATTGCACGATCAGTATCGATTGTTGAAGAATTATCGCAGCAATAGCGAGATATGGATTTCTGCTTATGGTAAATTCCTTCAATATTCCTTGCTGATATTTTGTATTACTTTACTGTCGATATTTGAGACTTCGGTTTTCGATGATGTTAGGAAGGAACACTGGTACAAGCCTCAGTGGATTATTCGAACAAAAACTGACGTAGTGCATGATATTGACGGGTTTAATGCTCTTTTGAGAGCTTTGGTTAGTAATAATTTAGGTGAACTTGTGATTGAGTCCTATTACTTGATGAAAGAAGATTGTCATAGAAGGACTGGAATCATCGGGAGAGGCTACTGGTTTAAGAATGTGAAGCAGGATGCACAAAAGATTTATGGTGAATCGCTCGAGTTTCTAGAGGAAGAAGACCCGCAGCTACAGCCATATCTATGCATTGAGCTGCTGATCGGGCTTTGA

Protein sequence

MNKSSPERAFNNEFLGNISVADDSRSSVRVTERRWESMLPAARKGGGISESDSEPRNLSIEAIQAVQSLKRAKEDLQQLDRVYDSEVKALIEVRYDGCSSRAHSSERVYRNYSILHDQYRLLKNYRSNSEIWISAYGKFLQYSLLIFCITLLSIFETSVFDDVRKEHWYKPQWIIRTKTDVVHDIDGFNALLRALVSNNLGELVIESYYLMKEDCHRRTGIIGRGYWFKNVKQDAQKIYGESLEFLEEEDPQLQPYLCIELLIGL

Homology

[Close]

BLAST of Carg18102 vs. NCBI nr
Match: KAG7022781.1 (hypothetical protein SDJN02_16517, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 529.6 bits (1363), Expect = 1.5e-146
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 0


Query: 1   MNKSSPERAFNNEFLGNISVADDSRSSVRVTERRWESMLPAARKGGGISESDSEPRNLSI 60
           MNKSSPERAFNNEFLGNISVADDSRSSVRVTERRWESMLPAARKGGGISESDSEPRNLSI
Sbjct: 1   MNKSSPERAFNNEFLGNISVADDSRSSVRVTERRWESMLPAARKGGGISESDSEPRNLSI 60

Query: 61  EAIQAVQSLKRAKEDLQQLDRVYDSEVKALIEVRYDGCSSRAHSSERVYRNYSILHDQYR 120
           EAIQAVQSLKRAKEDLQQLDRVYDSEVKALIEVRYDGCSSRAHSSERVYRNYSILHDQYR
Sbjct: 61  EAIQAVQSLKRAKEDLQQLDRVYDSEVKALIEVRYDGCSSRAHSSERVYRNYSILHDQYR 120

Query: 121 LLKNYRSNSEIWISAYGKFLQYSLLIFCITLLSIFETSVFDDVRKEHWYKPQWIIRTKTD 180
           LLKNYRSNSEIWISAYGKFLQYSLLIFCITLLSIFETSVFDDVRKEHWYKPQWIIRTKTD
Sbjct: 121 LLKNYRSNSEIWISAYGKFLQYSLLIFCITLLSIFETSVFDDVRKEHWYKPQWIIRTKTD 180

Query: 181 VVHDIDGFNALLRALVSNNLGELVIESYYLMKEDCHRRTGIIGRGYWFKNVKQDAQKIYG 240
           VVHDIDGFNALLRALVSNNLGELVIESYYLMKEDCHRRTGIIGRGYWFKNVKQDAQKIYG
Sbjct: 181 VVHDIDGFNALLRALVSNNLGELVIESYYLMKEDCHRRTGIIGRGYWFKNVKQDAQKIYG 240

Query: 241 ESLEFLEEEDPQLQPYLCIELLIGL 266
           ESLEFLEEEDPQLQPYLCIELLIGL
Sbjct: 241 ESLEFLEEEDPQLQPYLCIELLIGL 265

[Close]

BLAST of Carg18102 vs. NCBI nr
Match: KAG6589065.1 (hypothetical protein SDJN03_17630, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 415.2 bits (1066), Expect = 4.1e-112
Identity = 220/265 (83.02%), Postives = 220/265 (83.02%), Query Frame = 0


Query: 1   MNKSSPERAFNNEFLGNISVADDSRSSVRVTERRWESMLPAARKGGGISESDSEPRNLSI 60
           MNKSSPERAFNNEFLGNISVADDSRSSVRVTERRWESMLPAARKGGGISESDSEPRNLSI
Sbjct: 1   MNKSSPERAFNNEFLGNISVADDSRSSVRVTERRWESMLPAARKGGGISESDSEPRNLSI 60

Query: 61  EAIQAVQSLKRAKEDLQQLDRVYDSEVKALIEVRYDGCSSRAHSSERVYRNYSILHDQYR 120
           EAIQAVQSLKRAKEDLQQLDRVYDSEVKALIEVRYDGCSSRAHS    YRNYSILHDQYR
Sbjct: 61  EAIQAVQSLKRAKEDLQQLDRVYDSEVKALIEVRYDGCSSRAHS----YRNYSILHDQYR 120

Query: 121 LLKNYRSNSEIWISAYGKFLQYSLLIFCITLLSIFETSVFDDVRKEHWYKPQWIIRTKTD 180
           LLKNYRSNSEIWISAYGKFLQYSLLIFCITLLSIFETSVFDDVRKEHWYKPQ        
Sbjct: 121 LLKNYRSNSEIWISAYGKFLQYSLLIFCITLLSIFETSVFDDVRKEHWYKPQ-------- 180

Query: 181 VVHDIDGFNALLRALVSNNLGELVIESYYLMKEDCHRRTGIIGRGYWFKNVKQDAQKIYG 240
                                            DCHRRTGIIGRGYWFKNVKQDAQKIYG
Sbjct: 181 ---------------------------------DCHRRTGIIGRGYWFKNVKQDAQKIYG 220

Query: 241 ESLEFLEEEDPQLQPYLCIELLIGL 266
           ESLEFLEEEDPQLQPYLCIELLIGL
Sbjct: 241 ESLEFLEEEDPQLQPYLCIELLIGL 220

[Close]

BLAST of Carg18102 vs. NCBI nr
Match: KAG6589074.1 (hypothetical protein SDJN03_17639, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 402.1 bits (1032), Expect = 3.6e-108
Identity = 214/265 (80.75%), Postives = 216/265 (81.51%), Query Frame = 0


Query: 1   MNKSSPERAFNNEFLGNISVADDSRSSVRVTERRWESMLPAARKGGGISESDSEPRNLSI 60
           MNKSSPERAFNNEFLGN SVADDS SSVRVTERRWESMLPAARKGGGISESDSEPRNLSI
Sbjct: 1   MNKSSPERAFNNEFLGNFSVADDSWSSVRVTERRWESMLPAARKGGGISESDSEPRNLSI 60

Query: 61  EAIQAVQSLKRAKEDLQQLDRVYDSEVKALIEVRYDGCSSRAHSSERVYRNYSILHDQYR 120
           EAIQAVQSLKRAKED QQLDRVYDSEVKALIEVRYDGCSSRAHS    +RNYSILHDQYR
Sbjct: 61  EAIQAVQSLKRAKEDSQQLDRVYDSEVKALIEVRYDGCSSRAHS----FRNYSILHDQYR 120

Query: 121 LLKNYRSNSEIWISAYGKFLQYSLLIFCITLLSIFETSVFDDVRKEHWYKPQWIIRTKTD 180
           LLKNYRSNSEIWISAYGKFLQYSLLIFCITLLSIFETSVF+DVRKEHWYKPQ        
Sbjct: 121 LLKNYRSNSEIWISAYGKFLQYSLLIFCITLLSIFETSVFEDVRKEHWYKPQ-------- 180

Query: 181 VVHDIDGFNALLRALVSNNLGELVIESYYLMKEDCHRRTGIIGRGYWFKNVKQDAQKIYG 240
                                            DC RRTGIIGRGYWFKNVKQDAQKIYG
Sbjct: 181 ---------------------------------DCRRRTGIIGRGYWFKNVKQDAQKIYG 220

Query: 241 ESLEFLEEEDPQLQPYLCIELLIGL 266
           ESLEFLEEEDPQLQPYLCIELLIGL
Sbjct: 241 ESLEFLEEEDPQLQPYLCIELLIGL 220

[Close]

BLAST of Carg18102 vs. NCBI nr
Match: XP_038888189.1 (protein THYLAKOID ASSEMBLY 8, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 134.0 bits (336), Expect = 1.8e-27
Identity = 93/230 (40.43%), Postives = 114/230 (49.57%), Query Frame = 0


Query: 56  RNLSIEAIQAVQSLKRAKEDLQQLDRVYDSEVKALIEVRYDGCSSRAHSSERVYRNYSIL 115
           RNLSIEAIQAVQSLKR K+DLQQLDRVYDS+++ L++                       
Sbjct: 56  RNLSIEAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLK----------------------- 115

Query: 116 HDQYRLLKNYRSNSEIWISAYGKFLQYSLLIFCITLLSIFETSVFDDVRKEHWYKPQ--- 175
            D   +L+     +E                 C   L +FE     DVR EHWYKPQ   
Sbjct: 116 FDMMAVLRELLRQNE-----------------CSLALKVFE-----DVRNEHWYKPQVSL 175

Query: 176 ---------------------WIIRTKTDVVHDIDGFNALLRALVSNNLGELVIESYYLM 235
                                  ++ +TD+  +IDGFNALL+ALVS+NLGEL +ESYYLM
Sbjct: 176 YADIIRVLASNGLFERVQIIHSYLKAETDLAPEIDGFNALLKALVSHNLGELAMESYYLM 235

Query: 236 KE-DCHRRTGII----------GRGYWFKNVKQDAQKIYGESLEFLEEED 251
           KE  C                 G     + VKQDAQK+YGESLEFLEEE+
Sbjct: 236 KEIGCEPDKASFRIVIKGLESKGEAVDLRTVKQDAQKLYGESLEFLEEEE 240

[Close]

BLAST of Carg18102 vs. NCBI nr
Match: XP_031744771.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucumis sativus] >KGN43371.1 hypothetical protein Csa_020464 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-26
Identity = 91/230 (39.57%), Postives = 114/230 (49.57%), Query Frame = 0


Query: 56  RNLSIEAIQAVQSLKRAKEDLQQLDRVYDSEVKALIEVRYDGCSSRAHSSERVYRNYSIL 115
           RNLSIEAIQAVQSLKR K+DLQQLDRVYDS+++ L++                       
Sbjct: 56  RNLSIEAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLK----------------------- 115

Query: 116 HDQYRLLKNYRSNSEIWISAYGKFLQYSLLIFCITLLSIFETSVFDDVRKEHWYKPQ--- 175
            D   +L+     +E                 C   L +FE     DVRKEHWYKPQ   
Sbjct: 116 FDMLAVLRELLRQNE-----------------CSLALKVFE-----DVRKEHWYKPQVSL 175

Query: 176 ---------------------WIIRTKTDVVHDIDGFNALLRALVSNNLGELVIESYYLM 235
                                  ++ + D+  +IDGFNALL+ALVS+NLGEL +ESYYLM
Sbjct: 176 YADIITVLASNGLFERVQIILSYMKAEADLAPEIDGFNALLKALVSHNLGELAMESYYLM 235

Query: 236 KE-DCHRRTGII----------GRGYWFKNVKQDAQKIYGESLEFLEEED 251
           K+  C                 G     + VKQDAQ++YGESLEFLEEE+
Sbjct: 236 KDVGCEPDKASFRIVIKGLESKGEAVDLRTVKQDAQRLYGESLEFLEEEE 240

[Close]

BLAST of Carg18102 vs. ExPASy TrEMBL
Match: A0A0A0K6A9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G027870 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 5.8e-27
Identity = 91/230 (39.57%), Postives = 114/230 (49.57%), Query Frame = 0


Query: 56  RNLSIEAIQAVQSLKRAKEDLQQLDRVYDSEVKALIEVRYDGCSSRAHSSERVYRNYSIL 115
           RNLSIEAIQAVQSLKR K+DLQQLDRVYDS+++ L++                       
Sbjct: 56  RNLSIEAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLK----------------------- 115

Query: 116 HDQYRLLKNYRSNSEIWISAYGKFLQYSLLIFCITLLSIFETSVFDDVRKEHWYKPQ--- 175
            D   +L+     +E                 C   L +FE     DVRKEHWYKPQ   
Sbjct: 116 FDMLAVLRELLRQNE-----------------CSLALKVFE-----DVRKEHWYKPQVSL 175

Query: 176 ---------------------WIIRTKTDVVHDIDGFNALLRALVSNNLGELVIESYYLM 235
                                  ++ + D+  +IDGFNALL+ALVS+NLGEL +ESYYLM
Sbjct: 176 YADIITVLASNGLFERVQIILSYMKAEADLAPEIDGFNALLKALVSHNLGELAMESYYLM 235

Query: 236 KE-DCHRRTGII----------GRGYWFKNVKQDAQKIYGESLEFLEEED 251
           K+  C                 G     + VKQDAQ++YGESLEFLEEE+
Sbjct: 236 KDVGCEPDKASFRIVIKGLESKGEAVDLRTVKQDAQRLYGESLEFLEEEE 240

[Close]

BLAST of Carg18102 vs. ExPASy TrEMBL
Match: A0A6J1C1T5 (pentatricopeptide repeat-containing protein At1g62350-like OS=Momordica charantia OX=3673 GN=LOC111007673 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.7e-26
Identity = 94/230 (40.87%), Postives = 113/230 (49.13%), Query Frame = 0


Query: 56  RNLSIEAIQAVQSLKRAKEDLQQLDRVYDSEVKALIEVRYDGCSSRAHSSERVYRNYSIL 115
           RNLSIEAIQAVQSLKR K DLQQLDRVYDS++  L++                       
Sbjct: 57  RNLSIEAIQAVQSLKRVKNDLQQLDRVYDSKISRLLK----------------------- 116

Query: 116 HDQYRLLKNYRSNSEIWISAYGKFLQYSLLIFCITLLSIFETSVFDDVRKEHWYKPQ--- 175
            D   +L+     +E                 C+  L +FE     DVR EHWYKPQ   
Sbjct: 117 FDMMAVLRELLRQNE-----------------CLLALKVFE-----DVRNEHWYKPQVSL 176

Query: 176 ---------------------WIIRTKTDVVHDIDGFNALLRALVSNNLGELVIESYYLM 235
                                  ++ +TD+  +IDGFNALLRALVS NLGEL +ESYYLM
Sbjct: 177 YADIITVLASNGLFEQVQIIHSYLKVETDLAPEIDGFNALLRALVSYNLGELAMESYYLM 236

Query: 236 K----EDCHRRTGIIGRGYW-------FKNVKQDAQKIYGESLEFLEEED 251
           K    E       I+ +G          + VKQDAQKIYG+ LEFLEEED
Sbjct: 237 KKVGCEPDKTSFRIVIKGLESTVEAVDLRIVKQDAQKIYGDLLEFLEEED 241

[Close]

BLAST of Carg18102 vs. ExPASy TrEMBL
Match: A0A5A7UZI6 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold54G00170 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.2e-26
Identity = 90/230 (39.13%), Postives = 114/230 (49.57%), Query Frame = 0


Query: 56  RNLSIEAIQAVQSLKRAKEDLQQLDRVYDSEVKALIEVRYDGCSSRAHSSERVYRNYSIL 115
           RNLSIEAIQAVQSLKR K+DLQQLDRVYDS+++ L++                       
Sbjct: 56  RNLSIEAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLK----------------------- 115

Query: 116 HDQYRLLKNYRSNSEIWISAYGKFLQYSLLIFCITLLSIFETSVFDDVRKEHWYKPQ--- 175
            D   +L+     +E                 C   L +FE     DVR EHWYKPQ   
Sbjct: 116 FDMLAVLRELLRQNE-----------------CSLALKVFE-----DVRNEHWYKPQVSL 175

Query: 176 ---------------------WIIRTKTDVVHDIDGFNALLRALVSNNLGELVIESYYLM 235
                                  ++ +TD+  +IDGFNALL+ALV +NLG+L +ESYYLM
Sbjct: 176 YADIITVLASNGLFERVQIILSYMKAETDLAPEIDGFNALLKALVGHNLGKLAMESYYLM 235

Query: 236 KE-DCH----------RRTGIIGRGYWFKNVKQDAQKIYGESLEFLEEED 251
           KE  C           +   + G     + VKQDAQK+YGESLEFLEE +
Sbjct: 236 KEVGCEPNKASFRIVIKGLELKGEAVDLRTVKQDAQKLYGESLEFLEEAE 240

[Close]

BLAST of Carg18102 vs. ExPASy TrEMBL
Match: A0A1S3BRZ8 (pentatricopeptide repeat-containing protein At3g46870-like OS=Cucumis melo OX=3656 GN=LOC103492562 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.2e-26
Identity = 90/230 (39.13%), Postives = 114/230 (49.57%), Query Frame = 0


Query: 56  RNLSIEAIQAVQSLKRAKEDLQQLDRVYDSEVKALIEVRYDGCSSRAHSSERVYRNYSIL 115
           RNLSIEAIQAVQSLKR K+DLQQLDRVYDS+++ L++                       
Sbjct: 56  RNLSIEAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLK----------------------- 115

Query: 116 HDQYRLLKNYRSNSEIWISAYGKFLQYSLLIFCITLLSIFETSVFDDVRKEHWYKPQ--- 175
            D   +L+     +E                 C   L +FE     DVR EHWYKPQ   
Sbjct: 116 FDMLAVLRELLRQNE-----------------CSLALKVFE-----DVRNEHWYKPQVSL 175

Query: 176 ---------------------WIIRTKTDVVHDIDGFNALLRALVSNNLGELVIESYYLM 235
                                  ++ +TD+  +IDGFNALL+ALV +NLG+L +ESYYLM
Sbjct: 176 YADIITVLASNGLFERVQIILSYMKAETDLAPEIDGFNALLKALVGHNLGKLAMESYYLM 235

Query: 236 KE-DCH----------RRTGIIGRGYWFKNVKQDAQKIYGESLEFLEEED 251
           KE  C           +   + G     + VKQDAQK+YGESLEFLEE +
Sbjct: 236 KEVGCEPNKASFRIVIKGLELKGEAVDLRTVKQDAQKLYGESLEFLEEAE 240

[Close]

BLAST of Carg18102 vs. ExPASy TrEMBL
Match: A0A5D3CCT4 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00060 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 6.4e-26
Identity = 89/230 (38.70%), Postives = 113/230 (49.13%), Query Frame = 0


Query: 56  RNLSIEAIQAVQSLKRAKEDLQQLDRVYDSEVKALIEVRYDGCSSRAHSSERVYRNYSIL 115
           RNLSIEAIQAVQSLKR K+DLQQLDRVYDS+++ L++                       
Sbjct: 56  RNLSIEAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLK----------------------- 115

Query: 116 HDQYRLLKNYRSNSEIWISAYGKFLQYSLLIFCITLLSIFETSVFDDVRKEHWYKPQ--- 175
            D   +L+     +E                 C   L +FE     DVR EHWYKPQ   
Sbjct: 116 FDMLAVLRELLRQNE-----------------CSLALKVFE-----DVRNEHWYKPQVSL 175

Query: 176 ---------------------WIIRTKTDVVHDIDGFNALLRALVSNNLGELVIESYYLM 235
                                  ++ +TD+  +IDGFNALL+ LV +NLG+L +ESYYLM
Sbjct: 176 YADIITVLASNGLFERVQIILSYMKAETDLAPEIDGFNALLKVLVGHNLGKLAMESYYLM 235

Query: 236 KE-DCH----------RRTGIIGRGYWFKNVKQDAQKIYGESLEFLEEED 251
           KE  C           +   + G     + VKQDAQK+YGESLEFLEE +
Sbjct: 236 KEVGCEPNKASFRIVIKGLELKGEAVDLRTVKQDAQKLYGESLEFLEEAE 240

[Close]

BLAST of Carg18102 vs. TAIR 10
Match: AT5G09320.1 (Vacuolar sorting protein 9 (VPS9) domain )

HSP 1 Score: 62.4 bits (150), Expect = 6.4e-10
Identity = 66/236 (27.97%), Postives = 101/236 (42.80%), Query Frame = 0


Query: 56  RNLSIEAIQAVQSLKRAKEDLQQLDRVYDSEVKALIEVRYDGCSSRAHSSERVYRNYSIL 115
           R LSIEAIQAVQ+LKRA                 L        S+ + SS  + R     
Sbjct: 503 RMLSIEAIQAVQALKRAN--------------PLLPPPPVPSTSTTSSSSALLDR----- 562

Query: 116 HDQYRLLKNYRSNSEIWISAYGKFLQYSLLIFCITLLSIFETS----VFDDVRKEHWYKP 175
                          + IS + + L++ ++     LL   E S    VF+++RKE+WYKP
Sbjct: 563 ---------------VIISKFRRLLKFDMVAVLRELLRQNECSLALKVFEEIRKEYWYKP 622

Query: 176 QWIIRTKTDVV--------------------------HDIDGFNALLRALVSNNLGELVI 235
           Q  +R  TD++                           +I+ FN LL  L+++ L +LV+
Sbjct: 623 Q--VRMYTDMITVMADNSLMEEVNYLYSAMKSEKGLMAEIEWFNTLLTILLNHKLFDLVM 682

Query: 236 ESYYLMKEDCHRR---------TGIIGRGYWFKN--VKQDAQKIYGESLEFLEEED 251
           + Y  M+   +            G+   G    +  V+QDA + YGESLEF+EE++
Sbjct: 683 DCYAFMQSIGYEPDRASFRVLVLGLESNGEMGLSAIVRQDAHEYYGESLEFIEEDE 702

The following BLAST results are available for this feature:

BLAST of Carg18102 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022781.1	1.5e-146	100.00	hypothetical protein SDJN02_16517, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6589065.1	4.1e-112	83.02	hypothetical protein SDJN03_17630, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6589074.1	3.6e-108	80.75	hypothetical protein SDJN03_17639, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038888189.1	1.8e-27	40.43	protein THYLAKOID ASSEMBLY 8, chloroplastic-like [Benincasa hispida]	[more]
XP_031744771.1	1.2e-26	39.57	protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucumis sativus] >KGN43371.1 h...	[more]

BLAST of Carg18102 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg18102 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6A9	5.8e-27	39.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G027870 PE=4 SV=1	[more]
A0A6J1C1T5	1.7e-26	40.87	pentatricopeptide repeat-containing protein At1g62350-like OS=Momordica charanti...	[more]
A0A5A7UZI6	2.2e-26	39.13	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BRZ8	2.2e-26	39.13	pentatricopeptide repeat-containing protein At3g46870-like OS=Cucumis melo OX=36...	[more]
A0A5D3CCT4	6.4e-26	38.70	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Carg18102 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G09320.1	6.4e-10	27.97	Vacuolar sorting protein 9 (VPS9) domain	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 62..89
None	No IPR available	PANTHER	PTHR47594:SF4	THYLAKOID ASSEMBLY8	coord: 56..92 coord: 177..213
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 57..251 e-value: 8.7E-7 score: 30.4
IPR044190	Protein THYLAKOID ASSEMBLY 8-like	PANTHER	PTHR47594	PPR CONTAINING PLANT-LIKE PROTEIN	coord: 177..213
IPR044190	Protein THYLAKOID ASSEMBLY 8-like	PANTHER	PTHR47594	PPR CONTAINING PLANT-LIKE PROTEIN	coord: 56..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18102-RA	Carg18102-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0000373	Group II intron splicing
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding