Carg18088 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18088
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RRP15-like protein
Location	Carg_Chr11: 11726892 .. 11729763 (+)
RNA-Seq Expression	Carg18088
Synteny	Carg18088

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAGGAAGGGGAATTGATGAGAGGTACGAAGAGGAGTAAAAAGATCGGTTCTAGGAACAAGAAAAGACCGAGGATGATGGGTGGAAGTGGAAACAAAGTTAAGATTGATAGGAAAATGCAGAAACTTTTTCGAAAACGAGCGCGGGAGTATAATTCAGATGATGAAGATGATGACACAAATACTGCAGCGTCTCCAGCGGTTGGAGATGAGAGCAAAGTTTCAGAGCACAATCGCGAGGAGGTTGAAGATGAAGAGTTTTCTGAGGGTGAAGAAGAGGAAGGGAACGATGTGAATTCGGATGCGGGGCTTTCCGAAGACGATGAGAGTGGTGTAATGCAACCGGGTATAACTAAGTTTATTGAAGGTTGTAGAGCATTCAGAGCTGCTTTCAGGAGTATTCTTAAGAAGAGCATATCTGATGAAACTCTGGTAGTTTATACATCTTACGTGTGTTGGAGTTGTTTTCAATGGTAGTAATGAAGGATTAATCCGCCATGTTTTTGTTGCAGGGTCCTATATTATCAGCAAACAAGAAGCTTGTTGCTGAAAAGCTTGCAGAAGAGGAAGCTGAGCGGAAGGTCAAAGGAGAGGCCAAGAAGGAGAAACAATTGGTATTTCCTATTATGTTTGTTGTATGATTTAGCTTGCTTCAAATTGGCTTACTCTAAATGTTTGGATATTGTAGCTGGCAGAAAAAGGGCATGTGAAGCCTGCTACTTACTTGGATTCTCATGAGAAGTTTCTTATTGGCGTTGCTACAAAAGGAGGTAGTGTATCGTTTTATCTTCTATAAAGATGGGTGTGGCTGTTGATTATAGCATTTGTTGTCATACTAACATAGTTATCTCTATGCATTGGTTCTTGTTGGATTGCCAGTCGTCAAGTTGTTTAATGCTGTAAGTAGCCAAATTTATATTTCAGCCAATTTTTTGCTCTTCTATTTTGTATTCATCGCTGAATTCCGTTATTATTAATATGATACAGGTCAACAAGGCACAACATGCCCAGAAGGGTTTGAATCCTTCCAGAGCTAAAGATGCTAAAGGTATTGTGCCTCCTATGTAACTTTGATCTCAGAAGTTAACAAAATCAATAATTGTGTAGAACTAATATAATTTTCACCCTTTCTCTCTTGCTTTGTGAAAATGGCATTTGCATTCGATTAATTTGGTTTGAATCTGTAGTTCACGTTACATTGTACTGAATCTTGTAGCTTAATTTTCGACGTTGTACGATGTATGTCTTATATTTTGTTTTGGGGTTTCTGCTTTATCCTTGATGAAAACCATTTTGTGTAGTCTGACAACATACCAAAGTTCTAATTAATGAGTCATAGTAGCTTTACTATGTGATTGGAGTAACCAGTTATTTATAGGCACGTGCCTTGGATTTATCGCCCCGTTAGTTTCTCATGCTTGCTTTCTGTCAACTAATGCCTTCCCTTCCACTGTTGGCTTACGTAGTGTTATCTCGAGTTTAGCGTAACATTACTAGACCTATCATGGTTGCATACTTGCACGCTCATTCTTTCTTTCTTGACTTGTGATTATGTGAGGGGCTATTGAAGACTTAGGGTGAAACCATGTGTTGACCTTTTCATTCTATCTTGTCTCATTCTGAGTAATTTATTTGGTTTATACTGTCAGCTATAAGTAAGCGCAGGAAAGAAGCCTTCTTTTCTGAGTTGGGCAAGCCAACTTTGTCAGCAACAAACAGTAATGCGAAGGTTGGTTATTTCTACTTTCTAGTCTTCCAATTTCCGCTATAGAATTTGATAAATTTATCAACTTTTAACGTGTTCGTAAATTCTTGTCTCAATCGCTTACAAGGGATGTTACTCTTTACAAACACCTAAGTCTCTGTACTCGAGGCAAAGCATATGTGTGGCCTGTTTAATTAACCATCATCACCGTTGTTTTTGTTTACAGTGGAATGGGGAAGGGAGGTGTATGATGGTTAAGGGAGGTGTATTATCTGTTTCTTCGTGTTCATAATGAATTAAAATGACCACCTCTATGTTGAACAGGGGAACACATCAGGTGATGCAGCGGAAGCTGAAGGGCCTGCCTGGGCTCCATTACGTGATAATTATATGCTGACCAATTCCAAGCTAAAAGATTGGGATAAGATGCCAGTAAGATATACTTTCAAATACTAATGTCGGTTGCGCCTGTTACTCTTGGTTCCGATTTTCATATCAGTGTGATCAACTATCCTTGCAGGATAATACGACTAAAGCTGAGGACAACGGGAGAATGTTGGGTGACAGTAGTTCAGACGACGATGATTGATTGGTTTCATAAATCTTATAGTTTTCAGTTAGCCGATCGTTCACAAAGCTGGGTTCGATTTTGGCTTCGTAGTGTTGATACAAAAAGATGCCCTAAGCGTTTACGGTCACGTGGTGGCGAACTCACCTTGAATGCCTCAGCTATATCTTGTTATTGAGCCCACAAAAAATTCCCTCTATTCTGATCTCCAGTGAGATTCAAGTGTAAAAGGTCACCCCTTTGCTCTGAGTTGATATGATTTTTGAGCAAAGTGGTTGAAGATGAAAATTTTGGTCTCAATTTGTATGGATTGCACAAGTAGTTAAGAGAGAAATGTATTGGTGCTAATTTACTTATTGAAATTTATAAAATCTACTAACTCTGTCTCTTAAGTTTGTTTCAGTTGTTGGTTGTGCCATTTTTAAACTGGTTGGTCTTTGTAGTTATTCAAACTAAAGCTATTTTATGGGTTTCTTTTCTTGGCAACTAAACAATTGTTTTTGTTTTACGTATCACCATGTGATACATCTGCTAGGGAGAGGTTTATACACACTAGCGTCCTCGTATCACGATGCATCTGCTAGGGAGAGGTTTTT

mRNA sequence

ATGGCTGAGGAAGGGGAATTGATGAGAGGTACGAAGAGGAGTAAAAAGATCGGTTCTAGGAACAAGAAAAGACCGAGGATGATGGGTGGAAGTGGAAACAAAGTTAAGATTGATAGGAAAATGCAGAAACTTTTTCGAAAACGAGCGCGGGAGTATAATTCAGATGATGAAGATGATGACACAAATACTGCAGCGTCTCCAGCGGTTGGAGATGAGAGCAAAGTTTCAGAGCACAATCGCGAGGAGGTTGAAGATGAAGAGTTTTCTGAGGGTGAAGAAGAGGAAGGGAACGATGTGAATTCGGATGCGGGGCTTTCCGAAGACGATGAGAGTGGTGTAATGCAACCGGGTATAACTAAGTTTATTGAAGGTTGTAGAGCATTCAGAGCTGCTTTCAGGAGTATTCTTAAGAAGAGCATATCTGATGAAACTCTGGGTCCTATATTATCAGCAAACAAGAAGCTTGTTGCTGAAAAGCTTGCAGAAGAGGAAGCTGAGCGGAAGGTCAAAGGAGAGGCCAAGAAGGAGAAACAATTGCTGGCAGAAAAAGGGCATGTGAAGCCTGCTACTTACTTGGATTCTCATGAGAAGTTTCTTATTGGCGTTGCTACAAAAGGAGTCGTCAAGTTGTTTAATGCTGTCAACAAGGCACAACATGCCCAGAAGGGTTTGAATCCTTCCAGAGCTAAAGATGCTAAAGGTATTGTGCCTCCTATCTTAATTTTCGACGTTGTACGATCTATAAGTAAGCGCAGGAAAGAAGCCTTCTTTTCTGAGTTGGGCAAGCCAACTTTGTCAGCAACAAACAGTAATGCGAAGGGGAACACATCAGGTGATGCAGCGGAAGCTGAAGGGCCTGCCTGGGCTCCATTACGTGATAATTATATGCTGACCAATTCCAAGCTAAAAGATTGGGATAAGATGCCAGATAATACGACTAAAGCTGAGGACAACGGGAGAATGTTGGGTGACAGTAGTTCAGACGACGATGATTGATTGGTTTCATAAATCTTATAGTTTTCAGTTAGCCGATCGTTCACAAAGCTGGGTTCGATTTTGGCTTCGTAGTGTTGATACAAAAAGATGCCCTAAGCGTTTACGGTCACGTGGTGGCGAACTCACCTTGAATGCCTCAGCTATATCTTGTTATTGAGCCCACAAAAAATTCCCTCTATTCTGATCTCCAGTGAGATTCAAGTGTAAAAGGTCACCCCTTTGCTCTGAGTTGATATGATTTTTGAGCAAAGTGGTTGAAGATGAAAATTTTGGTCTCAATTTGTATGGATTGCACAAGTAGTTAAGAGAGAAATGTATTGGTGCTAATTTACTTATTGAAATTTATAAAATCTACTAACTCTGTCTCTTAAGTTTGTTTCAGTTGTTGGTTGTGCCATTTTTAAACTGGTTGGTCTTTGTAGTTATTCAAACTAAAGCTATTTTATGGGTTTCTTTTCTTGGCAACTAAACAATTGTTTTTGTTTTACGTATCACCATGTGATACATCTGCTAGGGAGAGGTTTATACACACTAGCGTCCTCGTATCACGATGCATCTGCTAGGGAGAGGTTTTT

Coding sequence (CDS)

ATGGCTGAGGAAGGGGAATTGATGAGAGGTACGAAGAGGAGTAAAAAGATCGGTTCTAGGAACAAGAAAAGACCGAGGATGATGGGTGGAAGTGGAAACAAAGTTAAGATTGATAGGAAAATGCAGAAACTTTTTCGAAAACGAGCGCGGGAGTATAATTCAGATGATGAAGATGATGACACAAATACTGCAGCGTCTCCAGCGGTTGGAGATGAGAGCAAAGTTTCAGAGCACAATCGCGAGGAGGTTGAAGATGAAGAGTTTTCTGAGGGTGAAGAAGAGGAAGGGAACGATGTGAATTCGGATGCGGGGCTTTCCGAAGACGATGAGAGTGGTGTAATGCAACCGGGTATAACTAAGTTTATTGAAGGTTGTAGAGCATTCAGAGCTGCTTTCAGGAGTATTCTTAAGAAGAGCATATCTGATGAAACTCTGGGTCCTATATTATCAGCAAACAAGAAGCTTGTTGCTGAAAAGCTTGCAGAAGAGGAAGCTGAGCGGAAGGTCAAAGGAGAGGCCAAGAAGGAGAAACAATTGCTGGCAGAAAAAGGGCATGTGAAGCCTGCTACTTACTTGGATTCTCATGAGAAGTTTCTTATTGGCGTTGCTACAAAAGGAGTCGTCAAGTTGTTTAATGCTGTCAACAAGGCACAACATGCCCAGAAGGGTTTGAATCCTTCCAGAGCTAAAGATGCTAAAGGTATTGTGCCTCCTATCTTAATTTTCGACGTTGTACGATCTATAAGTAAGCGCAGGAAAGAAGCCTTCTTTTCTGAGTTGGGCAAGCCAACTTTGTCAGCAACAAACAGTAATGCGAAGGGGAACACATCAGGTGATGCAGCGGAAGCTGAAGGGCCTGCCTGGGCTCCATTACGTGATAATTATATGCTGACCAATTCCAAGCTAAAAGATTGGGATAAGATGCCAGATAATACGACTAAAGCTGAGGACAACGGGAGAATGTTGGGTGACAGTAGTTCAGACGACGATGATTGA

Protein sequence

MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDDTNTAASPAVGDESKVSEHNREEVEDEEFSEGEEEEGNDVNSDAGLSEDDESGVMQPGITKFIEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLLAEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKGIVPPILIFDVVRSISKRRKEAFFSELGKPTLSATNSNAKGNTSGDAAEAEGPAWAPLRDNYMLTNSKLKDWDKMPDNTTKAEDNGRMLGDSSSDDDD

Homology

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BLAST of Carg18088 vs. NCBI nr
Match: KAG7022795.1 (RRP15-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 618.2 bits (1593), Expect = 4.0e-173
Identity = 331/331 (100.00%), Postives = 331/331 (100.00%), Query Frame = 0


Query: 1   MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD 60
           MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD
Sbjct: 1   MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD 60

Query: 61  TNTAASPAVGDESKVSEHNREEVEDEEFSEGEEEEGNDVNSDAGLSEDDESGVMQPGITK 120
           TNTAASPAVGDESKVSEHNREEVEDEEFSEGEEEEGNDVNSDAGLSEDDESGVMQPGITK
Sbjct: 61  TNTAASPAVGDESKVSEHNREEVEDEEFSEGEEEEGNDVNSDAGLSEDDESGVMQPGITK 120

Query: 121 FIEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLL 180
           FIEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLL
Sbjct: 121 FIEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLL 180

Query: 181 AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKGIVPPIL 240
           AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKGIVPPIL
Sbjct: 181 AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKGIVPPIL 240

Query: 241 IFDVVRSISKRRKEAFFSELGKPTLSATNSNAKGNTSGDAAEAEGPAWAPLRDNYMLTNS 300
           IFDVVRSISKRRKEAFFSELGKPTLSATNSNAKGNTSGDAAEAEGPAWAPLRDNYMLTNS
Sbjct: 241 IFDVVRSISKRRKEAFFSELGKPTLSATNSNAKGNTSGDAAEAEGPAWAPLRDNYMLTNS 300

Query: 301 KLKDWDKMPDNTTKAEDNGRMLGDSSSDDDD 332
           KLKDWDKMPDNTTKAEDNGRMLGDSSSDDDD
Sbjct: 301 KLKDWDKMPDNTTKAEDNGRMLGDSSSDDDD 331

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BLAST of Carg18088 vs. NCBI nr
Match: KAG6589088.1 (RRP15-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 582.4 bits (1500), Expect = 2.5e-162
Identity = 317/331 (95.77%), Postives = 318/331 (96.07%), Query Frame = 0


Query: 1   MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD 60
           MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD
Sbjct: 1   MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD 60

Query: 61  TNTAASPAVGDESKVSEHNREEVEDEEFSEGEEEEGNDVNSDAGLSEDDESGVMQPGITK 120
           TNTAASPAVGDESKVSEHNREEVEDEEFSEGEEEEGNDVNSDAGLSEDDESGVMQPGITK
Sbjct: 61  TNTAASPAVGDESKVSEHNREEVEDEEFSEGEEEEGNDVNSDAGLSEDDESGVMQPGITK 120

Query: 121 FIEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLL 180
           FIEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLL
Sbjct: 121 FIEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLL 180

Query: 181 AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKGIVPPIL 240
           AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAK       
Sbjct: 181 AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAK------- 240

Query: 241 IFDVVRSISKRRKEAFFSELGKPTLSATNSNAKGNTSGDAAEAEGPAWAPLRDNYMLTNS 300
                 +ISKRRKEAFFSELGKPTLSATNSNAKGNTSGDAAEAEGPAWAPLRDNYMLTNS
Sbjct: 241 ------AISKRRKEAFFSELGKPTLSATNSNAKGNTSGDAAEAEGPAWAPLRDNYMLTNS 300

Query: 301 KLKDWDKMPDNTTKAEDNGRMLGDSSSDDDD 332
           KLKDWDKMPDNTTKAEDNGRMLGDSSSDDDD
Sbjct: 301 KLKDWDKMPDNTTKAEDNGRMLGDSSSDDDD 318

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BLAST of Carg18088 vs. NCBI nr
Match: XP_022928388.1 (RRP15-like protein [Cucurbita moschata])

HSP 1 Score: 581.3 bits (1497), Expect = 5.5e-162
Identity = 316/331 (95.47%), Postives = 318/331 (96.07%), Query Frame = 0


Query: 1   MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD 60
           MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD
Sbjct: 1   MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD 60

Query: 61  TNTAASPAVGDESKVSEHNREEVEDEEFSEGEEEEGNDVNSDAGLSEDDESGVMQPGITK 120
           TNTAA+PAVGDESKVSEHNREEVEDEEFSEGEEEEGNDVNSDAGLSEDDESGVMQPGITK
Sbjct: 61  TNTAAAPAVGDESKVSEHNREEVEDEEFSEGEEEEGNDVNSDAGLSEDDESGVMQPGITK 120

Query: 121 FIEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLL 180
           FIEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLL
Sbjct: 121 FIEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLL 180

Query: 181 AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKGIVPPIL 240
           AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAK       
Sbjct: 181 AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAK------- 240

Query: 241 IFDVVRSISKRRKEAFFSELGKPTLSATNSNAKGNTSGDAAEAEGPAWAPLRDNYMLTNS 300
                 +ISKRRKEAFFSELGKPTLSATNSNAKGNTSGDAAEAEGPAWAPLRDNYMLTNS
Sbjct: 241 ------AISKRRKEAFFSELGKPTLSATNSNAKGNTSGDAAEAEGPAWAPLRDNYMLTNS 300

Query: 301 KLKDWDKMPDNTTKAEDNGRMLGDSSSDDDD 332
           KLKDWDKMPDNTTKAEDNGRMLGDSSSDDDD
Sbjct: 301 KLKDWDKMPDNTTKAEDNGRMLGDSSSDDDD 318

[Close]

BLAST of Carg18088 vs. NCBI nr
Match: XP_022989440.1 (RRP15-like protein [Cucurbita maxima])

HSP 1 Score: 572.8 bits (1475), Expect = 1.9e-159
Identity = 311/331 (93.96%), Postives = 316/331 (95.47%), Query Frame = 0


Query: 1   MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD 60
           MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD
Sbjct: 1   MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD 60

Query: 61  TNTAASPAVGDESKVSEHNREEVEDEEFSEGEEEEGNDVNSDAGLSEDDESGVMQPGITK 120
           TNTAA+PAVGDESKVSEHNREEVEDEEFSEGEEEEGNDVNSDAGLSEDDESGVMQPGITK
Sbjct: 61  TNTAAAPAVGDESKVSEHNREEVEDEEFSEGEEEEGNDVNSDAGLSEDDESGVMQPGITK 120

Query: 121 FIEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLL 180
           FIEGCRAFRAAFRSILKKSISDETLGPILSAN+KLVAEKLAEEEAERKV GEAKKEKQL+
Sbjct: 121 FIEGCRAFRAAFRSILKKSISDETLGPILSANRKLVAEKLAEEEAERKVTGEAKKEKQLM 180

Query: 181 AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKGIVPPIL 240
           AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAK       
Sbjct: 181 AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAK------- 240

Query: 241 IFDVVRSISKRRKEAFFSELGKPTLSATNSNAKGNTSGDAAEAEGPAWAPLRDNYMLTNS 300
                 +ISKRRKEAFFSELGKPTLSATN+NAKGNTSGDAAEAE PAWAPLRDNYMLTNS
Sbjct: 241 ------AISKRRKEAFFSELGKPTLSATNNNAKGNTSGDAAEAEEPAWAPLRDNYMLTNS 300

Query: 301 KLKDWDKMPDNTTKAEDNGRMLGDSSSDDDD 332
           KLKDWDKMPDNTTKAEDNGRMLGDSSSDDDD
Sbjct: 301 KLKDWDKMPDNTTKAEDNGRMLGDSSSDDDD 318

[Close]

BLAST of Carg18088 vs. NCBI nr
Match: XP_023529755.1 (RRP15-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 567.8 bits (1462), Expect = 6.2e-158
Identity = 309/331 (93.35%), Postives = 313/331 (94.56%), Query Frame = 0


Query: 1   MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD 60
           MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD
Sbjct: 1   MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD 60

Query: 61  TNTAASPAVGDESKVSEHNREEVEDEEFSEGEEEEGNDVNSDAGLSEDDESGVMQPGITK 120
           T TAA+PAVGDESKVSEHNREEV DEE SEGEEEEGNDVNSDAGLSEDDESGVMQPGITK
Sbjct: 61  TKTAAAPAVGDESKVSEHNREEVVDEEISEGEEEEGNDVNSDAGLSEDDESGVMQPGITK 120

Query: 121 FIEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLL 180
           FIEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQL+
Sbjct: 121 FIEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLM 180

Query: 181 AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKGIVPPIL 240
           AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAK       
Sbjct: 181 AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAK------- 240

Query: 241 IFDVVRSISKRRKEAFFSELGKPTLSATNSNAKGNTSGDAAEAEGPAWAPLRDNYMLTNS 300
                 +ISKRRKEAFFSELGKPTLS+TN NAKGNTSGDAAEAEGPAWAPLRDNYMLTNS
Sbjct: 241 ------AISKRRKEAFFSELGKPTLSSTNRNAKGNTSGDAAEAEGPAWAPLRDNYMLTNS 300

Query: 301 KLKDWDKMPDNTTKAEDNGRMLGDSSSDDDD 332
           KLKDWDKMPDN TKAEDNGRMLGDSSSDDDD
Sbjct: 301 KLKDWDKMPDNMTKAEDNGRMLGDSSSDDDD 318

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BLAST of Carg18088 vs. ExPASy Swiss-Prot
Match: Q3T062 (RRP15-like protein OS=Bos taurus OX=9913 GN=RRP15 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.3e-09
Identity = 95/310 (30.65%), Postives = 140/310 (45.16%), Query Frame = 0


Query: 31  SGNKVKID---RKMQKLFRKRAREYNSDDEDDDTNTAASPAVGDESKVSEHNREEVEDEE 90
           +G K+KI    ++M+ +    A E    D+D   N  +  + G            +E + 
Sbjct: 12  AGKKLKISLRKKRMKMVVASVASELEDKDKDASDNEGSLGSCG------------LEKDH 71

Query: 91  FSEGEEEEGNDVNSDAGLSEDDESGVMQPGITKFIEGCRA-FRAAFRSILKKSISDETLG 150
           FS G+E    D   +A   EDD     +        G  A +  A   IL K I  E+  
Sbjct: 72  FSSGDEAVEADNEDEAEPREDDNDSAAEA-----TAGANAGWADAMARILSKKI-PESKP 131

Query: 151 PILSANKKL--VAEKLAEEEAERKVKGEAKKEKQLLAEKGHVKPATYLDSH-EKFLIGVA 210
            IL  NK+L    EKL +E  E++ + + K+E +++     VKP    D   E+ L  +A
Sbjct: 132 TILVRNKELEKEKEKLKQERLEKRKQLDKKREWEMMC---RVKPDVVKDKETERNLQRIA 191

Query: 211 TKGVVKLFNAVNKAQHAQKGLNPSRAKDAKGIVPPILIFDVVRSISKRRKEAFFSELGKP 270
           T+GVV+LFNAV K    QK ++  + K+A G      I    + IS   K+ F S L   
Sbjct: 192 TRGVVQLFNAVQK---HQKNVD-EKVKEAGG-----SIRKRAKLISSVSKKDFISVLRGM 251

Query: 271 TLSATNSNAKGNTS----GDAAEAEGPAWAPLRDNYMLTNSKLKDWDKMPDNTTKAEDNG 330
             SA+  N+ G  S     +A   EGP W  LRD++M+  + +KDWDK  D       +G
Sbjct: 252 DGSASEKNSAGKNSKAKQTEAKSEEGPGWTILRDDFMM-GASMKDWDKESDG-----PDG 285

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BLAST of Carg18088 vs. ExPASy Swiss-Prot
Match: Q9CYX7 (RRP15-like protein OS=Mus musculus OX=10090 GN=Rrp15 PE=1 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 1.2e-05
Identity = 69/238 (28.99%), Postives = 107/238 (44.96%), Query Frame = 0


Query: 81  EEVEDEEFSEGEEEEGNDVNSDAGLSEDDESGV--MQPGITKFIEGCRAFRAAFRSILKK 140
           +EV+D    EG  +   D + D     D E  V   +       E      + +   + K
Sbjct: 39  DEVKDSSDGEGSCDSEMDHSDDGAAEADSEDNVESCEEDNEDAAESSAGTNSGWADAMAK 98

Query: 141 SISDET---LGPILSANKKL--VAEKLAEEEAERKVKGEAKKEKQLLAEKGHVKPATYLD 200
            ++ +T      IL+ NK+L    EKL +E  E++ + + K+E ++L     VKP    D
Sbjct: 99  ILNKKTPKSKATILTKNKELEKEKEKLKQERLEKRKQLDKKREWEMLC---RVKPDVVKD 158

Query: 201 SH-EKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKGIVPPILIFDVVRSISKRR 260
              E+ L  +AT+GVV+LFNAV K Q         + K+A G V         + +S   
Sbjct: 159 KEAERNLQRIATRGVVQLFNAVQKHQRNV----GEKVKEAGGSVR-----KRAKLMSTVS 218

Query: 261 KEAFFSELGKPTLSATNSNAKGNTSGDAAEA---EGPAWAPLRDNYMLTNSKLKDWDK 308
           K+ F S L     ++ NS A  +      E    E P W  LRD++M+  + +KDWDK
Sbjct: 219 KKDFISVLRGMDGTSRNSPAGKSPKARQTEVKSEESPGWKILRDDFMM-GASMKDWDK 263

[Close]

BLAST of Carg18088 vs. ExPASy Swiss-Prot
Match: Q5M947 (RRP15-like protein OS=Rattus norvegicus OX=10116 GN=Rrp15 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 2.2e-04
Identity = 80/291 (27.49%), Postives = 132/291 (45.36%), Query Frame = 0


Query: 32  GNKVKIDRKMQKLFRKRAREYNSDDEDDDTNTAASPAVGDESKVSEHNREEVEDEEFSEG 91
           G K+K   K +K  +K A+   S  ED+  +++     G E         E E ++  +G
Sbjct: 13  GGKLKRSPKKKKKMKKVAKAAVSKLEDELKDSS-----GGEGSC------ESEMDDSDDG 72

Query: 92  EEEEGNDVNSDAGLSEDDESGVMQPGITKFIEGCRAFRAAFRSILKKSISDETLGPILSA 151
             E  ++ N ++   E++ +     G          +  A   IL K  + ++   IL+ 
Sbjct: 73  AAEADSEDNVESCEEENEVAAESSAGTNS------GWADAMAKILNKK-TPKSKPTILTK 132

Query: 152 NKKL--VAEKLAEEEAERKVKGEAKKEKQLLAEKGHVKPATYLDSH-EKFLIGVATKGVV 211
           NK+L    EKL +E  E++ + + K+E ++L     VKP    D   E+ L  +AT+GVV
Sbjct: 133 NKELEKEKEKLKQERLEKRKQIDKKREWEMLC---RVKPDVIKDKEAERNLQRIATRGVV 192

Query: 212 KLFNAVNKAQHAQKGLNPSRAKDAKGIVPPILIFDVVRSISKRRKEAFFSELGKPTLSAT 271
           +LFNAV K Q         + K+  G      I    + +S   K+ F S L     ++ 
Sbjct: 193 QLFNAVQKHQRNV----DEKVKEVGG-----SIRKRAKLMSTVSKKDFISVLRGMDGASE 252

Query: 272 NSNAKGNTSGDAAEA---EGPAWAPLRDNYMLTNSKLKDWDKMPDNTTKAE 317
           NS+A  +      E    EGP W  LRD++M+  + +KDWDK  +    A+
Sbjct: 253 NSSAGKSPKARQTEVKSEEGPGWKILRDDFMM-GASMKDWDKESEGEEPAD 272

[Close]

BLAST of Carg18088 vs. ExPASy TrEMBL
Match: A0A6J1ENV8 (RRP15-like protein OS=Cucurbita moschata OX=3662 GN=LOC111435218 PE=3 SV=1)

HSP 1 Score: 581.3 bits (1497), Expect = 2.6e-162
Identity = 316/331 (95.47%), Postives = 318/331 (96.07%), Query Frame = 0


Query: 1   MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD 60
           MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD
Sbjct: 1   MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD 60

Query: 61  TNTAASPAVGDESKVSEHNREEVEDEEFSEGEEEEGNDVNSDAGLSEDDESGVMQPGITK 120
           TNTAA+PAVGDESKVSEHNREEVEDEEFSEGEEEEGNDVNSDAGLSEDDESGVMQPGITK
Sbjct: 61  TNTAAAPAVGDESKVSEHNREEVEDEEFSEGEEEEGNDVNSDAGLSEDDESGVMQPGITK 120

Query: 121 FIEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLL 180
           FIEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLL
Sbjct: 121 FIEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLL 180

Query: 181 AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKGIVPPIL 240
           AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAK       
Sbjct: 181 AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAK------- 240

Query: 241 IFDVVRSISKRRKEAFFSELGKPTLSATNSNAKGNTSGDAAEAEGPAWAPLRDNYMLTNS 300
                 +ISKRRKEAFFSELGKPTLSATNSNAKGNTSGDAAEAEGPAWAPLRDNYMLTNS
Sbjct: 241 ------AISKRRKEAFFSELGKPTLSATNSNAKGNTSGDAAEAEGPAWAPLRDNYMLTNS 300

Query: 301 KLKDWDKMPDNTTKAEDNGRMLGDSSSDDDD 332
           KLKDWDKMPDNTTKAEDNGRMLGDSSSDDDD
Sbjct: 301 KLKDWDKMPDNTTKAEDNGRMLGDSSSDDDD 318

[Close]

BLAST of Carg18088 vs. ExPASy TrEMBL
Match: A0A6J1JMD3 (RRP15-like protein OS=Cucurbita maxima OX=3661 GN=LOC111486494 PE=3 SV=1)

HSP 1 Score: 572.8 bits (1475), Expect = 9.4e-160
Identity = 311/331 (93.96%), Postives = 316/331 (95.47%), Query Frame = 0


Query: 1   MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD 60
           MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD
Sbjct: 1   MAEEGELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDD 60

Query: 61  TNTAASPAVGDESKVSEHNREEVEDEEFSEGEEEEGNDVNSDAGLSEDDESGVMQPGITK 120
           TNTAA+PAVGDESKVSEHNREEVEDEEFSEGEEEEGNDVNSDAGLSEDDESGVMQPGITK
Sbjct: 61  TNTAAAPAVGDESKVSEHNREEVEDEEFSEGEEEEGNDVNSDAGLSEDDESGVMQPGITK 120

Query: 121 FIEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLL 180
           FIEGCRAFRAAFRSILKKSISDETLGPILSAN+KLVAEKLAEEEAERKV GEAKKEKQL+
Sbjct: 121 FIEGCRAFRAAFRSILKKSISDETLGPILSANRKLVAEKLAEEEAERKVTGEAKKEKQLM 180

Query: 181 AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKGIVPPIL 240
           AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAK       
Sbjct: 181 AEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAK------- 240

Query: 241 IFDVVRSISKRRKEAFFSELGKPTLSATNSNAKGNTSGDAAEAEGPAWAPLRDNYMLTNS 300
                 +ISKRRKEAFFSELGKPTLSATN+NAKGNTSGDAAEAE PAWAPLRDNYMLTNS
Sbjct: 241 ------AISKRRKEAFFSELGKPTLSATNNNAKGNTSGDAAEAEEPAWAPLRDNYMLTNS 300

Query: 301 KLKDWDKMPDNTTKAEDNGRMLGDSSSDDDD 332
           KLKDWDKMPDNTTKAEDNGRMLGDSSSDDDD
Sbjct: 301 KLKDWDKMPDNTTKAEDNGRMLGDSSSDDDD 318

[Close]

BLAST of Carg18088 vs. ExPASy TrEMBL
Match: A0A6J1C2C5 (RRP15-like protein OS=Momordica charantia OX=3673 GN=LOC111007639 PE=3 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 1.8e-126
Identity = 259/326 (79.45%), Postives = 279/326 (85.58%), Query Frame = 0


Query: 6   ELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDDTNTAA 65
           E + G KR KKIGSRNKKRPRM GG GNKVK+DRKM+KLFRKRAREYNSDD+DD+   AA
Sbjct: 9   ETVGGAKRRKKIGSRNKKRPRMTGGGGNKVKVDRKMKKLFRKRAREYNSDDDDDEEEEAA 68

Query: 66  SPAVGDESKVSEHNREEVEDEEFSEGEEEEGNDVNSDAGLSEDDESGVMQPGITKFIEGC 125
           +PAVGDES VS  + EE  DEEF E E  EG DVN+DA LSEDDE+G +QPGITKF EGC
Sbjct: 69  APAVGDESTVSLRSPEEDRDEEFPEDEGGEGKDVNADAELSEDDENGEIQPGITKFTEGC 128

Query: 126 RAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLLAEKGH 185
           RAFRAAFRSILKKS+SDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQL+AEKGH
Sbjct: 129 RAFRAAFRSILKKSVSDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLVAEKGH 188

Query: 186 VKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKGIVPPILIFDVV 245
           VKPA YLD HEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAK            
Sbjct: 189 VKPANYLDFHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAK------------ 248

Query: 246 RSISKRRKEAFFSELGKPTLSATNSNAKGNTSGDAAEAEGPAWAPLRDNYMLTNSKLKDW 305
            +I+KRRKEAFFSELGK TLSATN N+K NTS  A +AEGPAWAPLRDNYMLTNSKLKDW
Sbjct: 249 -AITKRRKEAFFSELGKTTLSATN-NSKVNTSAGAVDAEGPAWAPLRDNYMLTNSKLKDW 308

Query: 306 DKMPDNTTKAEDNGRMLGDSSSDDDD 332
           DKMPD TT +ED+GRML +SSSDD+D
Sbjct: 309 DKMPDTTTLSEDDGRMLENSSSDDED 320

[Close]

BLAST of Carg18088 vs. ExPASy TrEMBL
Match: A0A1S3CFX9 (RRP15-like protein OS=Cucumis melo OX=3656 GN=LOC103500496 PE=3 SV=1)

HSP 1 Score: 456.4 bits (1173), Expect = 9.8e-125
Identity = 260/328 (79.27%), Postives = 282/328 (85.98%), Query Frame = 0


Query: 6   ELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDDTNTAA 65
           EL+RG KR KK+GSRNKKRPRMMGGSGNK K+D+KM+KLF+KRAREYNSDD+D+D   A 
Sbjct: 9   ELVRGAKRRKKMGSRNKKRPRMMGGSGNKAKVDKKMKKLFQKRAREYNSDDDDNDGEKA- 68

Query: 66  SPAVGDESKVSEH-NREEVEDEEFSEGEEEEGNDVNSDAGLSEDDESGVMQPGITKFIEG 125
            P V +ESK+  H + EEV DEE SEGEEE   DVN+D  LSEDDE+G +QPGITKF EG
Sbjct: 69  -PTVKNESKILVHSHEEEVGDEELSEGEEER-KDVNADVELSEDDENGEIQPGITKFTEG 128

Query: 126 CRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLLAEKG 185
           CRAFRAAF SILKK+ISDETLGPILSANKKLVAEKLAEEEAERKVKGEA+K KQL+ EKG
Sbjct: 129 CRAFRAAFISILKKNISDETLGPILSANKKLVAEKLAEEEAERKVKGEARKAKQLVGEKG 188

Query: 186 HVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKGIVPPILIFDV 245
           HVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSR KDAK           
Sbjct: 189 HVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRTKDAK----------- 248

Query: 246 VRSISKRRKEAFFSELGKPTLSATNSNAKGNTSGDAAEAEGPAWAPLRDNYMLTNSKLKD 305
             +I+KRRKEAFFSELGKPTLSATNSNAK NTSG AA+AEGPAWAPLRDNYMLTNSKLKD
Sbjct: 249 --AINKRRKEAFFSELGKPTLSATNSNAKLNTSGGAADAEGPAWAPLRDNYMLTNSKLKD 308

Query: 306 WDKMPDN-TTKAEDNGRMLGDSSSDDDD 332
           WDKMPDN  T AEDNGR+L DSSSD+DD
Sbjct: 309 WDKMPDNMMTAAEDNGRVLEDSSSDEDD 320

[Close]

BLAST of Carg18088 vs. ExPASy TrEMBL
Match: A0A0A0K320 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G031550 PE=3 SV=1)

HSP 1 Score: 456.1 bits (1172), Expect = 1.3e-124
Identity = 261/328 (79.57%), Postives = 280/328 (85.37%), Query Frame = 0


Query: 6   ELMRGTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNSDDEDDDTNTAA 65
           EL+RG KR KK+GSRN KRPRMMGGSGNKVKID+KM+KLF+KRAREYNSDD+DDD   A 
Sbjct: 9   ELVRGAKRRKKMGSRNNKRPRMMGGSGNKVKIDKKMKKLFQKRAREYNSDDDDDDGEKA- 68

Query: 66  SPAVGDESKV-SEHNREEVEDEEFSEGEEEEGNDVNSDAGLSEDDESGVMQPGITKFIEG 125
            P V  ESK+    + EEV DEEFSEGEEE   DVN+D  LSEDDE+G +QPGITKF EG
Sbjct: 69  -PRVKKESKILVRSHEEEVGDEEFSEGEEER-KDVNADVELSEDDENGEIQPGITKFTEG 128

Query: 126 CRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLLAEKG 185
           CRAFRAAF SILKK+ISDETLGPILSANKKLVAEKLAEEEAERKVKGEA+K KQL+ EKG
Sbjct: 129 CRAFRAAFMSILKKNISDETLGPILSANKKLVAEKLAEEEAERKVKGEARKAKQLVGEKG 188

Query: 186 HVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKGIVPPILIFDV 245
           HVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSR KDAK           
Sbjct: 189 HVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRTKDAK----------- 248

Query: 246 VRSISKRRKEAFFSELGKPTLSATNSNAKGNTSGDAAEAEGPAWAPLRDNYMLTNSKLKD 305
             +I+KRRKEAFFSELGKPTLSATNSNAK NTSG AA+ EGPAWAPLRDNYMLTNSKLKD
Sbjct: 249 --AINKRRKEAFFSELGKPTLSATNSNAKLNTSGGAADTEGPAWAPLRDNYMLTNSKLKD 308

Query: 306 WDKMPDN-TTKAEDNGRMLGDSSSDDDD 332
           WDKMPDN  T AEDNGR+L DSSSD+DD
Sbjct: 309 WDKMPDNMMTAAEDNGRVLEDSSSDEDD 320

[Close]

BLAST of Carg18088 vs. TAIR 10
Match: AT5G48240.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1665 (InterPro:IPR012459); Has 402 Blast hits to 382 proteins in 162 species: Archae - 0; Bacteria - 4; Metazoa - 139; Fungi - 111; Plants - 54; Viruses - 1; Other Eukaryotes - 93 (source: NCBI BLink). )

HSP 1 Score: 261.5 bits (667), Expect = 8.9e-70
Identity = 170/333 (51.05%), Postives = 215/333 (64.56%), Query Frame = 0


Query: 1   MAEEGELMR--GTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNS-DDE 60
           MA+ G   R  G K+  K  +RNKK+ +    + ++ K+  K QKLF+KRAR+YNS DDE
Sbjct: 11  MADRGSRKRRVGVKKGTK-AARNKKQ-KSKPSTSDRFKVTMKNQKLFQKRARDYNSDDDE 70

Query: 61  DDDTNTAASPAVGDESKVSEHNREEVEDEEFSEGEEEEGNDVNSDAGLSEDDESGVMQPG 120
           ++D  +   P V    K+          EE      EE ND NSD      ++ G ++ G
Sbjct: 71  EEDDESKKQPEVTIREKIFSDANMGPNYEEIG----EEDNDENSDG-----EDHGEIESG 130

Query: 121 ITKF-IEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKE 180
           ITKF  +GC AF+ AF++I+KK+  D+TLGP+LSA+K L+ EKLAE+EAE+K KG+A+K 
Sbjct: 131 ITKFATDGCNAFKIAFKAIMKKTKGDDTLGPVLSAHKHLIGEKLAEDEAEKKAKGQARKA 190

Query: 181 KQLLAEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKGIV 240
           K L+AEKGHVKP +YLDSHEK LIGVATKGVVKLFNAVNKAQHAQKGLNPSR+KDAK   
Sbjct: 191 KHLIAEKGHVKPGSYLDSHEKILIGVATKGVVKLFNAVNKAQHAQKGLNPSRSKDAK--- 250

Query: 241 PPILIFDVVRSISKRRKEAFFSELGKPTLSATNSNAKGNTSGDAAEAEGPAWAPLRDNYM 300
                      + KRRKEAF SELGK          K +T    +E E P WAPLRDNYM
Sbjct: 251 ----------VLKKRRKEAFLSELGK---------TKTDTKAHKSEDEAPVWAPLRDNYM 309

Query: 301 LTNSKLKDWDKMPDNTTKAEDNGRMLGDSSSDD 330
           L N KLKDWDK  + T++ +D   + GD S +D
Sbjct: 311 LANPKLKDWDKKQE-TSEGDDFAGLSGDESYED 309

[Close]

BLAST of Carg18088 vs. TAIR 10
Match: AT5G48240.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1665 (InterPro:IPR012459); Has 286 Blast hits to 283 proteins in 145 species: Archae - 0; Bacteria - 2; Metazoa - 103; Fungi - 97; Plants - 41; Viruses - 1; Other Eukaryotes - 42 (source: NCBI BLink). )

HSP 1 Score: 251.1 bits (640), Expect = 1.2e-66
Identity = 172/371 (46.36%), Postives = 218/371 (58.76%), Query Frame = 0


Query: 1   MAEEGELMR--GTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNS-DDE 60
           MA+ G   R  G K+  K  +RNKK+ +    + ++ K+  K QKLF+KRAR+YNS DDE
Sbjct: 11  MADRGSRKRRVGVKKGTK-AARNKKQ-KSKPSTSDRFKVTMKNQKLFQKRARDYNSDDDE 70

Query: 61  DDDTNTAASPAVGDESKVSEHNREEVEDEEFSEGEEEEGNDVNSDAGLSEDDESGVMQPG 120
           ++D  +   P V    K+          EE      EE ND NSD      ++ G ++ G
Sbjct: 71  EEDDESKKQPEVTIREKIFSDANMGPNYEEIG----EEDNDENSDG-----EDHGEIESG 130

Query: 121 ITKF-IEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKE 180
           ITKF  +GC AF+ AF++I+KK+  D+TLGP+LSA+K L+ EKLAE+EAE+K KG+A+K 
Sbjct: 131 ITKFATDGCNAFKIAFKAIMKKTKGDDTLGPVLSAHKHLIGEKLAEDEAEKKAKGQARKA 190

Query: 181 KQLLAEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKGIV 240
           K L+AEKGHVKP +YLDSHEK LIGVATKGVVKLFNAVNKAQHAQKGLNPSR+KDAK   
Sbjct: 191 KHLIAEKGHVKPGSYLDSHEKILIGVATKGVVKLFNAVNKAQHAQKGLNPSRSKDAK--- 250

Query: 241 PPILIFDVVRSISKRRKEAFFSELGKPTLSATNSNA------------------------ 300
                      + KRRKEAF SELGK        +A                        
Sbjct: 251 ----------VLKKRRKEAFLSELGKTKTDTKPFDARRNKLVFCLDLAPIESHEKNHLMS 310

Query: 301 --------------KGNTSGDAAEAEGPAWAPLRDNYMLTNSKLKDWDKMPDNTTKAEDN 330
                         KG+ S   +E E P WAPLRDNYML N KLKDWDK  + T++ +D 
Sbjct: 311 ESKLVFCLELASIEKGSPSAHKSEDEAPVWAPLRDNYMLANPKLKDWDKKQE-TSEGDDF 356

[Close]

BLAST of Carg18088 vs. TAIR 10
Match: AT5G48240.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1665 (InterPro:IPR012459); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 218.0 bits (554), Expect = 1.1e-56
Identity = 141/266 (53.01%), Postives = 178/266 (66.92%), Query Frame = 0


Query: 1   MAEEGELMR--GTKRSKKIGSRNKKRPRMMGGSGNKVKIDRKMQKLFRKRAREYNS-DDE 60
           MA+ G   R  G K+  K  +RNKK+ +    + ++ K+  K QKLF+KRAR+YNS DDE
Sbjct: 11  MADRGSRKRRVGVKKGTK-AARNKKQ-KSKPSTSDRFKVTMKNQKLFQKRARDYNSDDDE 70

Query: 61  DDDTNTAASPAVGDESKVSEHNREEVEDEEFSEGEEEEGNDVNSDAGLSEDDESGVMQPG 120
           ++D  +   P V    K+          EE      EE ND NSD      ++ G ++ G
Sbjct: 71  EEDDESKKQPEVTIREKIFSDANMGPNYEEIG----EEDNDENSDG-----EDHGEIESG 130

Query: 121 ITKF-IEGCRAFRAAFRSILKKSISDETLGPILSANKKLVAEKLAEEEAERKVKGEAKKE 180
           ITKF  +GC AF+ AF++I+KK+  D+TLGP+LSA+K L+ EKLAE+EAE+K KG+A+K 
Sbjct: 131 ITKFATDGCNAFKIAFKAIMKKTKGDDTLGPVLSAHKHLIGEKLAEDEAEKKAKGQARKA 190

Query: 181 KQLLAEKGHVKPATYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDAKGIV 240
           K L+AEKGHVKP +YLDSHEK LIGVATKGVVKLFNAVNKAQHAQKGLNPSR+KDAK   
Sbjct: 191 KHLIAEKGHVKPGSYLDSHEKILIGVATKGVVKLFNAVNKAQHAQKGLNPSRSKDAK--- 250

Query: 241 PPILIFDVVRSISKRRKEAFFSELGK 263
                      + KRRKEAF SELGK
Sbjct: 251 ----------VLKKRRKEAFLSELGK 252

The following BLAST results are available for this feature:

BLAST of Carg18088 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022795.1	4.0e-173	100.00	RRP15-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6589088.1	2.5e-162	95.77	RRP15-like protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022928388.1	5.5e-162	95.47	RRP15-like protein [Cucurbita moschata]	[more]
XP_022989440.1	1.9e-159	93.96	RRP15-like protein [Cucurbita maxima]	[more]
XP_023529755.1	6.2e-158	93.35	RRP15-like protein [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg18088 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3T062	1.3e-09	30.65	RRP15-like protein OS=Bos taurus OX=9913 GN=RRP15 PE=2 SV=1	[more]
Q9CYX7	1.2e-05	28.99	RRP15-like protein OS=Mus musculus OX=10090 GN=Rrp15 PE=1 SV=2	[more]
Q5M947	2.2e-04	27.49	RRP15-like protein OS=Rattus norvegicus OX=10116 GN=Rrp15 PE=1 SV=1	[more]

BLAST of Carg18088 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ENV8	2.6e-162	95.47	RRP15-like protein OS=Cucurbita moschata OX=3662 GN=LOC111435218 PE=3 SV=1	[more]
A0A6J1JMD3	9.4e-160	93.96	RRP15-like protein OS=Cucurbita maxima OX=3661 GN=LOC111486494 PE=3 SV=1	[more]
A0A6J1C2C5	1.8e-126	79.45	RRP15-like protein OS=Momordica charantia OX=3673 GN=LOC111007639 PE=3 SV=1	[more]
A0A1S3CFX9	9.8e-125	79.27	RRP15-like protein OS=Cucumis melo OX=3656 GN=LOC103500496 PE=3 SV=1	[more]
A0A0A0K320	1.3e-124	79.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G031550 PE=3 SV=1	[more]

BLAST of Carg18088 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48240.1	8.9e-70	51.05	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G48240.3	1.2e-66	46.36	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G48240.2	1.1e-56	53.01	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 162..182
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 299..314
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 264..331
IPR012459	Ribosomal RNA-processing protein 15	PFAM	PF07890	Rrp15p	coord: 128..256 e-value: 1.5E-19 score: 70.7
IPR012459	Ribosomal RNA-processing protein 15	PANTHER	PTHR13245	RRP15-LIKE PROTEIN	coord: 8..328

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18088-RA	Carg18088-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000460	maturation of 5.8S rRNA
biological_process	GO:0000470	maturation of LSU-rRNA
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0030687	preribosome, large subunit precursor