Carg18080 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18080
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	AP complex subunit sigma
Location	Carg_Chr11: 11769117 .. 11772490 (-)
RNA-Seq Expression	Carg18080
Synteny	Carg18080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAAGCTTGGCATTGGGTCGAGGTCCAACCTGTGTGGCCACCATTGTCCTCTTCACTTGTGTGTGGATCCCCCTGTGTCAACTGAAGACGTTCCTCGAGAGCATGATCGGGATTCTGTCGGGCAGGACGTATCAGCAGCTCACAATGGAGTTGCTACCGTGCGAGGTAAAACTTCCAGTTTGTAGGTTCGAAGAGCTGCATCGTGGCAGCGCATCGGAAGAGGATATTTGCTCCGTTTGCTTGGCGGGGTACACCGGAGAAGATTTGGTGAGCCAACTGCATAGATGTAGCCATACTTTTCATTATGAATGTATTGAGAATTGGTTCCATAGATATCATTTTACCTGCCCTTTGTGCAGATCCTTCCTCTCTTCTACACTGTAAATCCTTTTGGAACTTGAATTCCAATGTCCATGGTTTATAGATAGTAGTAGTAAAATTTAATTCGAACTTCAATATATGAACTACGAGTAGTTTTAGCTTGCATTGTCGTCGTACTCATCAAACGACGACAAAATATACTCTTTTAGTGTAGTATTTGACATATCTATCTTGAGTTACAGGCTCTGCAGCGTTCTTAAATGTTTCTTTTCTGATAAACAATGAAATTTTTTTGAATTTTCATTAAAATTGTTATTGAATTGTGACCTCGAGCAATTTTATTGTAATGTTTATGATTAAGATGATTTGTTTTTGTAATTTTTTAAAACCCAGTTGTTTTTGGAATATTTGCTTTTATTTTTGTTTTTTTTTTAAATATTTGGCTTTTTTTTATAGTTAAAATGTAGTTTTAATTGCTCACTTTTTATACTTTTTTTTTTTTCTTTATAATTTAATCCCACGCGATCACGTTTGGGAGGAAGGTCAACGCTTTAAAAAACAATAAAATGTCAACGACTAGAACTTTTTTTTTTTAAAATGTCAACGATTTTCCGCTTTGAGATTGGGTTTGTAATTCGCTTGTACAAAAGCCCAACGACCCAATATCACTAAATGGGCCTAAATGAAGTCGGCCCATTTTGCACCCCGAAACCGCAAAGCTTGTAATTCGCCAATATCACTAAATGGGCCTAAAATGAACTCGACCCATTTTCACCCCGAAGCCGCAAAGCTTGTAATTCGCTTGTACAAAAGCCCAACGGCCCAAATATCACTAAATGGGCCTAAAATGAACTGGGCCCATTTTGGACCCCGAAGCCTTCGGCGGGTAGGAATTCTGAATGAAATATATTTTTGGAGCGGAACAACGGACAAGGAACTGTCCTTGATCGGAGGGATCAAGTATTTGGTTGAGGATTCTGGAATTGAAACTTTTGATACCTGAAAGTTCAGACCAAAATGGTAATTGATTTCATTGCTTTGATTCATTTCTAGGCTTTGATTGTTTCAATGTTGAAATTGCTACGTTCTTGTTGTTAGTCCACCGGTTCGCGCATCTGCTTTGCTCTTTCTTGATGCGATGGTTTAATTGGTTTCTCTTTTACTGCTGAATTTTTGTGTCGTTTGAAATTATTTGGAGTGATCTCCGTGTTGTAAAGATTCATATCTTTGCTTAGCTGACATCCGAAATGCTCAACTTTTGTTTCTTTTTGTTGTTTGATTCGTCGTGTTCGTTCCTGCTGAATTGTTGTGGCGATTCTTGTTTCACTTCTTTTGTTCTCAAGCTCTTGTGAATGTGCTTCAGCCATGGGTTCCTGAACGATTAAATTCTCAACGACTTTTGTAAATTACCTGTAAGATCTTATTATTGTGGATTGGAGCCCTCTTCTAAATATCCTCATCATTCAAATTTTCTCAATAATGCGTGGTTTCTCATAGAAAAATAAACTTTCTTCAGTGCAACTTAGGTTATCTTCAACCTTTTGTTGCTCCAGTAAAGAAAATTTCGCCTAGCGTATGTCTTGCATGGTGCTCTAACTGATGTTGTTGGTGTAAATGTCCAGATTCACTTCGTGCTTCTTATAAGTAGACAAGGAAAAGTGAGGTTGACCAAATGGTATTCTCCTTATTCTCAGAAGGAGAGATCTAAGGTGGGTTAGCCATTTGCCTCATTCTGTAATGTAATTCTAATAGCTTTTCTTAATTTCCAATCCAAAGACATTTGAATGCTTATTTGCTTCAATAAGTCTTAGTACCCCTAGGATCTATTGGACTTACCATATTATGGCACATGCTCGGGTCTGCTCTCGTTCTTTAAAAAGGTTATCCGTGAGCTTAGTGGAATGATTCTAAATCGGGCACCTAAACTTTGCAACTTTGTGGAATGGAGAGGACTCAAAGCTGTCTATAAACGGTACGACGTGGTATATGAATGTGTTCTGCAATCCAATATATACCTCTTTTACAGATGATTAATGATTCTATTGGATGTGCAATGCAGATATGCTAGTCTTTACTTTTGCCTATGCATTGATCAGGAGGACAATGAATTAGAGATCCTTGAAATTATTCATCATTATGTTGAGATTTTGGATCGTTACTTCGGCAGTGTAAGTGAATTTAATTTTAGTTCGTAAGGTGTTTGAGATCATTCTTTGTGATCTTTTATTCATGTTTGTAGGTCTGTGAGTTGGATTTGATCTTCAACTTTCACAAGGTATTATTCACTTGCTTATTAAAGGTGCACGTTTTCTTTAATTTGCATCTCGTTGCCTCTGCTAGACATTTGTGTAAGTAAGCCCGATGCATTTGAATTACTCGTCCTCTTGCTTGCTCGTCAGTAACATTGTCTTAAGTGAACGTCCACGTTCATGTCCTTGATATGAAACCTTGAATGCACTGTGTACTTGGTATTATTCACTTGCTTATATTAAAGATGCACATTTTCTTCAATTTACATCTCGTTGCCTCTGCTAGACATTTGTGTAAGTAAGCCCAATGCATCTGAATTACTCGTCCTCTTGCTAGCTCGTGAGTAACATTGTCTTAAGTGAACTTTCACGTTCACATCCTTGAAATGAAACCTTGAATGCTTTATGTACTTTTCTTTCACCTGCCGTGTAAGCGATGCATCTGAGTTACTTGTCCTCTTGCTTGCTCGCCAGTAACATTGTCTTAAGTGAACGTTCACGTCCACGTCCTTGATATGAAACTTTGAATGCGTTGTGTACTTTTTTTTTCTTTTTCTAACATTGAAGGCGTATTATATATTGGATGAGCTTCTAATTGCTGGAGAACTCCAAGAATCTAGCAAGAAAACAGTAGCGAGATTGATAGCTGCACAGGTAACTATCTCCTTTTATGTTTGCAGCACCTGATGATCTCAGTTTGGGTGTATGTTAAGTTGATTTGGTTTGTAGGATTCGTTGGTGGAGACTGCCAAGGAGCAAGCTAGTTCAATAAGTAACATAATTGCACAGGCCACCAAGTAG

mRNA sequence

ATGATAAGCTTGGCATTGGGTCGAGGTCCAACCTGTGTGGCCACCATTGTCCTCTTCACTTGTGTGTGGATCCCCCTGTGTCAACTGAAGACGTTCCTCGAGAGCATGATCGGGATTCTGTCGGGCAGGACGTATCAGCAGCTCACAATGGAGTTGCTACCGTGCGAGGTAAAACTTCCAGTTTGTAGGTTCGAAGAGCTGCATCGTGGCAGCGCATCGGAAGAGGATATTTGCTCCGTTTGCTTGGCGGGGTACACCGGAGAAGATTTGATTCACTTCGTGCTTCTTATAAGTAGACAAGGAAAAGTGAGGTTGACCAAATGGTATTCTCCTTATTCTCAGAAGGAGAGATCTAAGGTTATCCGTGAGCTTAGTGGAATGATTCTAAATCGGGCACCTAAACTTTGCAACTTTGTGGAATGGAGAGGACTCAAAGCTGTCTATAAACGATATGCTAGTCTTTACTTTTGCCTATGCATTGATCAGGAGGACAATGAATTAGAGATCCTTGAAATTATTCATCATTATGTTGAGATTTTGGATCGTTACTTCGGCAGTGTCTGTGAGTTGGATTTGATCTTCAACTTTCACAAGGCGTATTATATATTGGATGAGCTTCTAATTGCTGGAGAACTCCAAGAATCTAGCAAGAAAACAGTAGCGAGATTGATAGCTGCACAGGATTCGTTGGTGGAGACTGCCAAGGAGCAAGCTAGTTCAATAAGTAACATAATTGCACAGGCCACCAAGTAG

Coding sequence (CDS)

ATGATAAGCTTGGCATTGGGTCGAGGTCCAACCTGTGTGGCCACCATTGTCCTCTTCACTTGTGTGTGGATCCCCCTGTGTCAACTGAAGACGTTCCTCGAGAGCATGATCGGGATTCTGTCGGGCAGGACGTATCAGCAGCTCACAATGGAGTTGCTACCGTGCGAGGTAAAACTTCCAGTTTGTAGGTTCGAAGAGCTGCATCGTGGCAGCGCATCGGAAGAGGATATTTGCTCCGTTTGCTTGGCGGGGTACACCGGAGAAGATTTGATTCACTTCGTGCTTCTTATAAGTAGACAAGGAAAAGTGAGGTTGACCAAATGGTATTCTCCTTATTCTCAGAAGGAGAGATCTAAGGTTATCCGTGAGCTTAGTGGAATGATTCTAAATCGGGCACCTAAACTTTGCAACTTTGTGGAATGGAGAGGACTCAAAGCTGTCTATAAACGATATGCTAGTCTTTACTTTTGCCTATGCATTGATCAGGAGGACAATGAATTAGAGATCCTTGAAATTATTCATCATTATGTTGAGATTTTGGATCGTTACTTCGGCAGTGTCTGTGAGTTGGATTTGATCTTCAACTTTCACAAGGCGTATTATATATTGGATGAGCTTCTAATTGCTGGAGAACTCCAAGAATCTAGCAAGAAAACAGTAGCGAGATTGATAGCTGCACAGGATTCGTTGGTGGAGACTGCCAAGGAGCAAGCTAGTTCAATAAGTAACATAATTGCACAGGCCACCAAGTAG

Protein sequence

MISLALGRGPTCVATIVLFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELLPCEVKLPVCRFEELHRGSASEEDICSVCLAGYTGEDLIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRAPKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK

Homology

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BLAST of Carg18080 vs. NCBI nr
Match: KAG7022803.1 (AP-1 complex subunit sigma-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 495.7 bits (1275), Expect = 2.3e-136
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0


Query: 1   MISLALGRGPTCVATIVLFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELLPCEVKLP 60
           MISLALGRGPTCVATIVLFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELLPCEVKLP
Sbjct: 1   MISLALGRGPTCVATIVLFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELLPCEVKLP 60

Query: 61  VCRFEELHRGSASEEDICSVCLAGYTGEDLIHFVLLISRQGKVRLTKWYSPYSQKERSKV 120
           VCRFEELHRGSASEEDICSVCLAGYTGEDLIHFVLLISRQGKVRLTKWYSPYSQKERSKV
Sbjct: 61  VCRFEELHRGSASEEDICSVCLAGYTGEDLIHFVLLISRQGKVRLTKWYSPYSQKERSKV 120

Query: 121 IRELSGMILNRAPKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEILEIIHHYVEIL 180
           IRELSGMILNRAPKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEILEIIHHYVEIL
Sbjct: 121 IRELSGMILNRAPKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEILEIIHHYVEIL 180

Query: 181 DRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASS 240
           DRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASS
Sbjct: 181 DRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASS 240

Query: 241 ISNIIAQATK 251
           ISNIIAQATK
Sbjct: 241 ISNIIAQATK 250

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BLAST of Carg18080 vs. NCBI nr
Match: KAG6589096.1 (AP-1 complex subunit sigma-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 487.3 bits (1253), Expect = 8.1e-134
Identity = 248/253 (98.02%), Postives = 250/253 (98.81%), Query Frame = 0


Query: 1   MISLALGRGPTCVATIVLFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELLPCEVKLP 60
           MISLALGRGPTCVATIVLFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELLPCEVKLP
Sbjct: 1   MISLALGRGPTCVATIVLFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELLPCEVKLP 60

Query: 61  VCRFEELHRGSASEEDICSVCLAGYTGEDL---IHFVLLISRQGKVRLTKWYSPYSQKER 120
           VCRF+ELHRGSASEEDICSVCLAG+TGEDL   IHFVLLISRQGKVRLTKWYSPYSQKER
Sbjct: 61  VCRFKELHRGSASEEDICSVCLAGFTGEDLTKMIHFVLLISRQGKVRLTKWYSPYSQKER 120

Query: 121 SKVIRELSGMILNRAPKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEILEIIHHYV 180
           SKVIRELSGMILNRAPKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEILEIIHHYV
Sbjct: 121 SKVIRELSGMILNRAPKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEILEIIHHYV 180

Query: 181 EILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQ 240
           EILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQ
Sbjct: 181 EILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQ 240

Query: 241 ASSISNIIAQATK 251
           ASSISNIIAQATK
Sbjct: 241 ASSISNIIAQATK 253

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BLAST of Carg18080 vs. NCBI nr
Match: KAE8645705.1 (hypothetical protein Csa_020389 [Cucumis sativus])

HSP 1 Score: 410.2 bits (1053), Expect = 1.3e-110
Identity = 214/257 (83.27%), Postives = 222/257 (86.38%), Query Frame = 0


Query: 1   MISLALGRGPTCVATIVLFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELLPCEVKLP 60
           MI +AL RG   +ATIV  TCVWIPL QLK  + SM  ILSGRT Q LT   LPCEVKL 
Sbjct: 38  MIGMALCRGSMSMATIVFLTCVWIPLSQLKAAISSMFDILSGRTCQMLTTASLPCEVKLL 97

Query: 61  VCRFEELHRGSASEEDICSVCLAGYTGEDL-------IHFVLLISRQGKVRLTKWYSPYS 120
           VCRFEEL R   SEE+ICSVCL  +T E L       IHFVLLISRQGKVRLTKWYSPY+
Sbjct: 98  VCRFEELQRAVGSEEEICSVCLTEFTREHLLKGYDFKIHFVLLISRQGKVRLTKWYSPYT 157

Query: 121 QKERSKVIRELSGMILNRAPKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEILEII 180
           QKERSKVIRELSGMILNR PKLCNFVEWRGLKAVYKRYASLYFC+CIDQEDNELE+LEII
Sbjct: 158 QKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQEDNELEVLEII 217

Query: 181 HHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVET 240
           HHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVET
Sbjct: 218 HHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVET 277

Query: 241 AKEQASSISNIIAQATK 251
           AKEQASSISNIIAQATK
Sbjct: 278 AKEQASSISNIIAQATK 294

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BLAST of Carg18080 vs. NCBI nr
Match: KAA0050549.1 (AP-1 complex subunit sigma-2 [Cucumis melo var. makuwa] >TYK18789.1 AP-1 complex subunit sigma-2 [Cucumis melo var. makuwa])

HSP 1 Score: 401.7 bits (1031), Expect = 4.5e-108
Identity = 205/238 (86.13%), Postives = 215/238 (90.34%), Query Frame = 0


Query: 13  VATIVLFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELLPCEVKLPVCRFEELHRGSA 72
           +AT+V  TCVWIPL QLK  + SM  ILSGRT   LT   +PCEVKL VCRFEEL RG  
Sbjct: 3   MATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLT--TVPCEVKLLVCRFEELQRGVG 62

Query: 73  SEEDICSVCLAGYTGEDLIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRA 132
           SEE+ICS+CL  +T E LIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNR 
Sbjct: 63  SEEEICSICLTEFTREHLIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRG 122

Query: 133 PKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCELDL 192
           PKLCNFVEWRGLKAVYKRYASLYFC+CIDQ+DNELE+LEIIHHYVEILDRYFGSVCELDL
Sbjct: 123 PKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDL 182

Query: 193 IFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 251
           IFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 183 IFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 238

[Close]

BLAST of Carg18080 vs. NCBI nr
Match: KAF3434927.1 (hypothetical protein FNV43_RR22014 [Rhamnella rubrinervis])

HSP 1 Score: 334.0 bits (855), Expect = 1.1e-87
Identity = 181/261 (69.35%), Postives = 202/261 (77.39%), Query Frame = 0


Query: 1   MISLALGRGPTCVATIVLFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELLPCEVKLP 60
           MI L   +     A IV  TCVWIP  QLK     ++G+      +Q  +E    +  LP
Sbjct: 1   MICLVGSQSHLSTAAIVFCTCVWIPFLQLKRAFFRILGLFFSTCGEQ-PLESCCSKTFLP 60

Query: 61  VCRFEELHRGSASE--------EDICSVCLAGYTGEDL---IHFVLLISRQGKVRLTKWY 120
           V RF +L     SE        ++ CS+CL  +  ED+   IHFVLLISRQGKVRLTKWY
Sbjct: 61  VGRFVDLGSCRRSEGISNGEEVDESCSICLVDFDKEDVVSKIHFVLLISRQGKVRLTKWY 120

Query: 121 SPYSQKERSKVIRELSGMILNRAPKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEI 180
           SPYSQKER+KV+RELSG+IL+R PKLCNFVEWRG K VYKRYASLYFC+CID+EDNELEI
Sbjct: 121 SPYSQKERTKVLRELSGVILSRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDREDNELEI 180

Query: 181 LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDS 240
           LEIIHH+VEILDRYFGSVCELDLIFNFHKAYYILDE+LIAGELQESSKKTVARLIAAQDS
Sbjct: 181 LEIIHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDS 240

Query: 241 LVETAKEQASSISNIIAQATK 251
           LVETAKEQASSISNIIAQATK
Sbjct: 241 LVETAKEQASSISNIIAQATK 260

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BLAST of Carg18080 vs. ExPASy Swiss-Prot
Match: O23685 (AP-1 complex subunit sigma-2 OS=Arabidopsis thaliana OX=3702 GN=AAP19-2 PE=2 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 2.0e-79
Identity = 146/160 (91.25%), Postives = 155/160 (96.88%), Query Frame = 0


Query: 90  LIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRAPKLCNFVEWRGLKAVYK 149
           +IHFVLL+SRQGKVRLTKWYSPY+QKERSKVIRELSG+ILNR PKLCNFVEWRG K VYK
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYK 60

Query: 150 RYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 209
           RYASLYFC+CIDQEDNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 210 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQAT 250
           GELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQAT
Sbjct: 121 GELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQAT 160

[Close]

BLAST of Carg18080 vs. ExPASy Swiss-Prot
Match: Q8LEZ8 (AP-1 complex subunit sigma-1 OS=Arabidopsis thaliana OX=3702 GN=AAP19-1 PE=1 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 1.0e-78
Identity = 144/161 (89.44%), Postives = 155/161 (96.27%), Query Frame = 0


Query: 90  LIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRAPKLCNFVEWRGLKAVYK 149
           +IHFVLL+SRQGKVRLTKWYSPY+QKERSKVIRELSG+ILNR PKLCNF+EWRG K VYK
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYK 60

Query: 150 RYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 209
           RYASLYFC+CID+ DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 210 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 251
           GELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQATK 161

[Close]

BLAST of Carg18080 vs. ExPASy Swiss-Prot
Match: B0G185 (AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum OX=44689 GN=ap1s2 PE=3 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 4.4e-58
Identity = 103/141 (73.05%), Postives = 126/141 (89.36%), Query Frame = 0


Query: 92  HFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRAPKLCNFVEWRGLKAVYKRY 151
           HF+LL+SRQGK RLTKWYSP++ KE+S+  RE+  M+LNR PKLCNF+EW+  K ++KRY
Sbjct: 4   HFLLLLSRQGKTRLTKWYSPFTNKEKSRFTREIGNMVLNRPPKLCNFLEWKEYKIIFKRY 63

Query: 152 ASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGE 211
           ASLYF +C D+EDNEL +LEIIHH+VEILDRYFG+VCELDLIFNFHKAYYILDEL++AGE
Sbjct: 64  ASLYFVVCCDREDNELIVLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDELIMAGE 123

Query: 212 LQESSKKTVARLIAAQDSLVE 233
           LQE+SKKTV RLI+ QD+L+E
Sbjct: 124 LQETSKKTVLRLISQQDTLLE 144

[Close]

BLAST of Carg18080 vs. ExPASy Swiss-Prot
Match: Q3ZBS3 (AP-1 complex subunit sigma-2 OS=Bos taurus OX=9913 GN=AP1S2 PE=2 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 6.4e-49
Identity = 94/146 (64.38%), Postives = 113/146 (77.40%), Query Frame = 0


Query: 91  IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRAPKLCNFVEWRGLKAVYKR 150
           + F+LL SRQGK+RL KWY P S KE+ K+ REL   +L R PK+C+F+EWR LK VYKR
Sbjct: 1   MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query: 151 YASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 210
           YASLYFC  I+ +DNEL  LEIIH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ G
Sbjct: 61  YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120

Query: 211 ELQESSKKTVARLIAAQDSLVETAKE 237
           E+QE+SKK V + I   D L E AKE
Sbjct: 121 EVQETSKKNVLKAIEQADLLQEDAKE 146

[Close]

BLAST of Carg18080 vs. ExPASy Swiss-Prot
Match: Q9DB50 (AP-1 complex subunit sigma-2 OS=Mus musculus OX=10090 GN=Ap1s2 PE=1 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 6.4e-49
Identity = 94/146 (64.38%), Postives = 113/146 (77.40%), Query Frame = 0


Query: 91  IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRAPKLCNFVEWRGLKAVYKR 150
           + F+LL SRQGK+RL KWY P S KE+ K+ REL   +L R PK+C+F+EWR LK VYKR
Sbjct: 1   MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query: 151 YASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 210
           YASLYFC  I+ +DNEL  LEIIH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ G
Sbjct: 61  YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120

Query: 211 ELQESSKKTVARLIAAQDSLVETAKE 237
           E+QE+SKK V + I   D L E AKE
Sbjct: 121 EVQETSKKNVLKAIEQADLLQEDAKE 146

[Close]

BLAST of Carg18080 vs. ExPASy TrEMBL
Match: A0A5D3D5G1 (AP-1 complex subunit sigma-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold945G00010 PE=3 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 2.2e-108
Identity = 205/238 (86.13%), Postives = 215/238 (90.34%), Query Frame = 0


Query: 13  VATIVLFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELLPCEVKLPVCRFEELHRGSA 72
           +AT+V  TCVWIPL QLK  + SM  ILSGRT   LT   +PCEVKL VCRFEEL RG  
Sbjct: 3   MATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLT--TVPCEVKLLVCRFEELQRGVG 62

Query: 73  SEEDICSVCLAGYTGEDLIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRA 132
           SEE+ICS+CL  +T E LIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNR 
Sbjct: 63  SEEEICSICLTEFTREHLIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRG 122

Query: 133 PKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCELDL 192
           PKLCNFVEWRGLKAVYKRYASLYFC+CIDQ+DNELE+LEIIHHYVEILDRYFGSVCELDL
Sbjct: 123 PKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDL 182

Query: 193 IFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 251
           IFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 183 IFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 238

[Close]

BLAST of Carg18080 vs. ExPASy TrEMBL
Match: A0A7J6EPV4 (Clat_adaptor_s domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_000501 PE=3 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 4.7e-87
Identity = 183/308 (59.42%), Postives = 207/308 (67.21%), Query Frame = 0


Query: 1   MISLALGRGPTCVATIVLFTCVWIPLCQLKTFLESMIGILSGRTY-------QQLTMELL 60
           MI L + +   CV TI+ +TC+WIPL QLK   +S+IG+L    +        ++     
Sbjct: 1   MICLVVSQSRFCVVTIIFYTCIWIPLLQLK---KSLIGLLKNIIFFNFDQNDYEINNHAN 60

Query: 61  PCEVKLPVCRF------------EELHRGSASEEDICSVCLAGYTGED------------ 120
             +  LP+ R+            EE       EE +CS+CL  +  ED            
Sbjct: 61  AVQPWLPISRYVDLKLKSQNKKVEEEEEEEEEEEALCSICLVDFEKEDVLVCGVELWWDD 120

Query: 121 ---------------------------LIHFVLLISRQGKVRLTKWYSPYSQKERSKVIR 180
                                      +IHFVLLISRQGKVRLTKWYSPYSQKER+KV+R
Sbjct: 121 VYDKNNVVQFEKGKPSSSSRSLQNLEEMIHFVLLISRQGKVRLTKWYSPYSQKERTKVLR 180

Query: 181 ELSGMILNRAPKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEILEIIHHYVEILDR 240
           ELSG+IL R PKLCNFVEWRG K VYKRYASLYFC+CIDQEDNELE+LEIIHHYVEILDR
Sbjct: 181 ELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEVLEIIHHYVEILDR 240

Query: 241 YFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSIS 251
           YFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKE+ASSIS
Sbjct: 241 YFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEEASSIS 300

[Close]

BLAST of Carg18080 vs. ExPASy TrEMBL
Match: A0A6J1JMH4 (AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111486525 PE=3 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 4.6e-82
Identity = 160/161 (99.38%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 90  LIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRAPKLCNFVEWRGLKAVYK 149
           +IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRAPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRAPKLCNFVEWRGLKAVYK 60

Query: 150 RYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 209
           RYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 210 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 251
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of Carg18080 vs. ExPASy TrEMBL
Match: A0A6J1EQV1 (AP complex subunit sigma OS=Cucurbita moschata OX=3662 GN=LOC111435057 PE=3 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 1.0e-81
Identity = 159/161 (98.76%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 90  LIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRAPKLCNFVEWRGLKAVYK 149
           +IHFVLLISRQGKVRLTKWYSPYSQKERSKV+RELSGMILNRAPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVMRELSGMILNRAPKLCNFVEWRGLKAVYK 60

Query: 150 RYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 209
           RYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 210 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 251
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of Carg18080 vs. ExPASy TrEMBL
Match: A0A6J1C1K2 (AP complex subunit sigma OS=Momordica charantia OX=3673 GN=LOC111007622 PE=3 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 2.3e-81
Identity = 158/161 (98.14%), Postives = 160/161 (99.38%), Query Frame = 0


Query: 90  LIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRAPKLCNFVEWRGLKAVYK 149
           +IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNR PKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 150 RYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 209
           RYASLYFC+CIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 210 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 251
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of Carg18080 vs. TAIR 10
Match: AT4G35410.2 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 297.0 bits (759), Expect = 1.4e-80
Identity = 146/160 (91.25%), Postives = 155/160 (96.88%), Query Frame = 0


Query: 90  LIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRAPKLCNFVEWRGLKAVYK 149
           +IHFVLL+SRQGKVRLTKWYSPY+QKERSKVIRELSG+ILNR PKLCNFVEWRG K VYK
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYK 60

Query: 150 RYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 209
           RYASLYFC+CIDQEDNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 210 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQAT 250
           GELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQAT
Sbjct: 121 GELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQAT 160

[Close]

BLAST of Carg18080 vs. TAIR 10
Match: AT2G17380.1 (associated protein 19 )

HSP 1 Score: 294.7 bits (753), Expect = 7.2e-80
Identity = 144/161 (89.44%), Postives = 155/161 (96.27%), Query Frame = 0


Query: 90  LIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRAPKLCNFVEWRGLKAVYK 149
           +IHFVLL+SRQGKVRLTKWYSPY+QKERSKVIRELSG+ILNR PKLCNF+EWRG K VYK
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYK 60

Query: 150 RYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 209
           RYASLYFC+CID+ DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 210 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 251
           GELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQATK 161

[Close]

BLAST of Carg18080 vs. TAIR 10
Match: AT4G35410.1 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 217.6 bits (553), Expect = 1.1e-56
Identity = 100/109 (91.74%), Postives = 106/109 (97.25%), Query Frame = 0


Query: 90  LIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRAPKLCNFVEWRGLKAVYK 149
           +IHFVLL+SRQGKVRLTKWYSPY+QKERSKVIRELSG+ILNR PKLCNFVEWRG K VYK
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYK 60

Query: 150 RYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHK 199
           RYASLYFC+CIDQEDNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHK
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHK 109

[Close]

BLAST of Carg18080 vs. TAIR 10
Match: AT1G47830.1 (SNARE-like superfamily protein )

HSP 1 Score: 155.2 bits (391), Expect = 6.8e-38
Identity = 73/141 (51.77%), Postives = 101/141 (71.63%), Query Frame = 0


Query: 90  LIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRAPKLCNFVEWRGLKAVYK 149
           +I F+LL +RQGK RL K+Y P  + E+ KV  E+  +++NR  K  NFVE+R  K +Y+
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVEFRTHKVIYR 60

Query: 150 RYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 209
           RYA L+F +C+D  DNEL  LE IH +VEILD +F +VCELDL+FNFHK Y ILDE ++A
Sbjct: 61  RYAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120

Query: 210 GELQESSKKTVARLIAAQDSL 231
           GELQE+SK+ +   ++  + L
Sbjct: 121 GELQETSKRAIIERMSELEKL 141

[Close]

BLAST of Carg18080 vs. TAIR 10
Match: AT2G19790.1 (SNARE-like superfamily protein )

HSP 1 Score: 119.4 bits (298), Expect = 4.1e-27
Identity = 57/138 (41.30%), Postives = 94/138 (68.12%), Query Frame = 0


Query: 91  IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRAPKLCNFVEWRGLKAVYKR 150
           I F+L++++QG+ RL ++Y   + +ER  +  E+    L R  + C+FVE R  K VY+R
Sbjct: 3   IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVYRR 62

Query: 151 YASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 210
           YASL+F + +D ++NEL ILE IH  VE +D++FG+VCELD++F+  KA+++L+E+++ G
Sbjct: 63  YASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMVMNG 122

Query: 211 ELQESSKKTVARLIAAQD 229
            + E+SK  +   I   D
Sbjct: 123 CIVETSKANILSPIQLMD 140

The following BLAST results are available for this feature:

BLAST of Carg18080 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022803.1	2.3e-136	100.00	AP-1 complex subunit sigma-2, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
KAG6589096.1	8.1e-134	98.02	AP-1 complex subunit sigma-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAE8645705.1	1.3e-110	83.27	hypothetical protein Csa_020389 [Cucumis sativus]	[more]
KAA0050549.1	4.5e-108	86.13	AP-1 complex subunit sigma-2 [Cucumis melo var. makuwa] >TYK18789.1 AP-1 complex...	[more]
KAF3434927.1	1.1e-87	69.35	hypothetical protein FNV43_RR22014 [Rhamnella rubrinervis]	[more]

BLAST of Carg18080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23685	2.0e-79	91.25	AP-1 complex subunit sigma-2 OS=Arabidopsis thaliana OX=3702 GN=AAP19-2 PE=2 SV=...	[more]
Q8LEZ8	1.0e-78	89.44	AP-1 complex subunit sigma-1 OS=Arabidopsis thaliana OX=3702 GN=AAP19-1 PE=1 SV=...	[more]
B0G185	4.4e-58	73.05	AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum OX=44689 GN=ap1s2 PE=3 ...	[more]
Q3ZBS3	6.4e-49	64.38	AP-1 complex subunit sigma-2 OS=Bos taurus OX=9913 GN=AP1S2 PE=2 SV=1	[more]
Q9DB50	6.4e-49	64.38	AP-1 complex subunit sigma-2 OS=Mus musculus OX=10090 GN=Ap1s2 PE=1 SV=1	[more]

BLAST of Carg18080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D5G1	2.2e-108	86.13	AP-1 complex subunit sigma-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A7J6EPV4	4.7e-87	59.42	Clat_adaptor_s domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_000...	[more]
A0A6J1JMH4	4.6e-82	99.38	AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111486525 PE=3 SV=1	[more]
A0A6J1EQV1	1.0e-81	98.76	AP complex subunit sigma OS=Cucurbita moschata OX=3662 GN=LOC111435057 PE=3 SV=1	[more]
A0A6J1C1K2	2.3e-81	98.14	AP complex subunit sigma OS=Momordica charantia OX=3673 GN=LOC111007622 PE=3 SV=...	[more]

BLAST of Carg18080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35410.2	1.4e-80	91.25	Clathrin adaptor complex small chain family protein	[more]
AT2G17380.1	7.2e-80	89.44	associated protein 19	[more]
AT4G35410.1	1.1e-56	91.74	Clathrin adaptor complex small chain family protein	[more]
AT1G47830.1	6.8e-38	51.77	SNARE-like superfamily protein	[more]
AT2G19790.1	4.1e-27	41.30	SNARE-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022775	AP complex, mu/sigma subunit	PFAM	PF01217	Clat_adaptor_s	coord: 91..229 e-value: 2.8E-53 score: 179.7
None	No IPR available	GENE3D	3.30.450.60		coord: 90..246 e-value: 9.8E-65 score: 219.1
None	No IPR available	PANTHER	PTHR11753:SF49	AP-1 COMPLEX SUBUNIT SIGMA-2	coord: 90..240
IPR016635	Adaptor protein complex, sigma subunit	PANTHER	PTHR11753	ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY	coord: 90..240
IPR044733	AP-1 complex subunit sigma	CDD	cd14831	AP1_sigma	coord: 92..232 e-value: 1.55024E-101 score: 289.843
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 91..228

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18080-RA	Carg18080-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0015031	protein transport
cellular_component	GO:0030121	AP-1 adaptor complex
molecular_function	GO:0035615	clathrin adaptor activity