Carg18077 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18077
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr11: 11777630 .. 11780785 (+)
RNA-Seq Expression	Carg18077
Synteny	Carg18077

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCAACTTGATGGAGCTCTCGGGACGTTGGGAGTTCGAACCCAGGTATACATATCCACATACAAGTGCTAGTGTATCATCAAAATCAACTTGATGGAGCTCTCGGGACGTCGGGAGTTCGAACCCAGGTATACATATTCACATTACACACCACATATCTTAGTGAAAATAATAAAAACAATAAACAAATGATGTTGTCTACTCCAATTGGATGATGTAAGTTGCAGGGACTGAAGCACAGGACCAGCTATGGTGAAACTTCATCAAAAAGAGTTATTTGTGTTTGACAGTGAACTGAGATTGTTACTGGTGGCGGAGGTAGTGTTCATGGGAGGCCACATGAAGACTGGCTTGAATGGAGGTACACGAGGTGCAGGCAAAGCTCCATTTAAAATTTGGAGTATATCTTGAGTTTGTGGCCGTTCACTTGCCATGGGATGTGAACATGCCAACCCAAGTAGTAGAAGCCTCCTAGCTTCATCGACCACAATATCATCACCGAGCTGGTTATCGACTGCTTTTTCGATATGTCCTTCGCGATGTACCTTCCACACCCAATCAACTAAGGTATATTGATGTTGCTCGTCTTCCACAGGAGCTCCTGGTCTCCTGCCACAAACAATCTCAAGCACCACTGCCCCAAAACCATATACGTCGGATTCTGGAGTTGCCCTTCCTTCGTGGAAGCATTCAGGAGCAACATAACCCATTGTGCCTGCAACTCCTCCATGTTGGAGGTCTGCATAAGAGTTTCTTTCAGGGTCCAACGCTCTCGCAAGGCCGAAATCTCCTAGACGAGCATGGAAGTCGGAATCAAGTAAGATATTGCTTGATTTGATATCTCGGTGCAATACCTTCTGGTCGTACTCATTATGCAGGTAATGCAACGCTGATGCAACTCCTACAAGGATTTTATAGCGATGTCTCCAGTTGAGAACATTCTGGTCAGCAATGTCATACAGGTGATTCTCAAGGCTTCCATTAGGCATGAAATCATATACTAATAAAAGCTTCCCTTTCTCGTAGCACCACCCTGAACAAGTATTCAATGCATATTTTAGTACATTGGTTTGAAATTACACTAAACTACACAAATATATGCTCTATCACTCTCTTTGAGTTGAGTTAGAATTTGTGAGATCCACATTGGTTGGGGAGGAGAACGGAACACCCTTTATAAGGGTGTGGAAACCTTTCTCTAGCAGACACGTTTTAAAAACCTTGAGGGGTTGCCCGAAAGGGACAGCCCAAAGAGGACAATATCTGCTAGCGGTGGGCTTGGGCTGTTACAAATGGTATCAGGGCCAGACACTAGGTGATGTGCTAGTGAGGAGGCTATTCCCCGAAAGGGGGTAGACATGAGGCGGCGTGCCAGTAAGGATGTTGGGCCACGAAGGAGGTGGATTTGGTAGGGGTCTCACATTGATTGGAGAAAAAAACGAGTGCCAGCGAGGACGCTGGGCTCTGAGGGGGGTAAATTGTGAGATCCCACATCGGTTAGGGAGAAACACCCTTTATAAGGGCGTGGAAACCTTTCTCAAGCAGACGCGATTTAAAAACCTTGAGGGGAAACCCGAAAGGGAAAGCCCAAAAAGGACAATATTTACTAGCGGTAGGCTTGGGCCGTTACAGAATTTTAGTGAAACCTCTCAATTACTGTCTTTTCTTTAGCAAATTATATATTTTGATGCGAAGTTGGCAGAAGAATGGAAGTTTTACCTTCTAAACGGACGAGGTTCCTGTGGCGAAGACGGTGAATAATGGTGAGCTCGTCCAGAAAATCGCCTTTGCTCTTAATGCTGTCCCTGGAGAATTTCTTGACAGCAACTTCAAGCCTGGCAACAGAACTTGATGATGCAGTGAAGTCCTTATCCTTTTCTTCTAGAATCCCTTTGTAAACAACCCCGAAGCCTCCATTTCCCAGAACCATGCTTTCATGGAAGTTATGAGTCGCCTTCCTTAGTTCCTTGTACTTGAACTCTCTCGGCATTCCCGGCAACCTCTTCAGCGTGCCCTGAACATTCGACTCCTCGTCCCTGCTCACTCTTCTCCTCTTCATATAACCAACAAATAACCAAACCCCAATCAGAATCATGATCGTTAGTATCGGAATTCCAACCCCGGCAAGGATCTTCAACCAAGTTAGATTTTTCTTCTCTGGCAGATGTTCCAAATCCAGCATCCATTCCAAGACACAGTTCAACTGAATTTCCGGGCTGCCTGTGGAAGCAGAAAATCCAATGTATGATTCTTGTTTCACATAGTGTTTGAGGTTTATTGTTTCATTGAGAAGAGGTTTATCAGGTTTTGGATCTTTGTTTGCAGACATGTAAACCTGCAAAAGTTTCGATATTCCATCATAAACAACCCAGATGCTGTAATTGGTTCCAATCTCTGGGGATAAAACTATGCCAGCTTTATTCAAGGAAACAGTCTTCCTCGATCGAATGGAGTTGACATTCAGACCGATATGGTTGTCGTCGGGGTCGAAATCCTGCTTCTGAGTATCGAATTCAATGGCTACAATTTGGTTGGTGCTGCTGCCATCGGTAGTTGCATTGGTGAGGCCCATCCACTGCCCCCAGCTCTGATCAGGTACATCAGCAGTCGGAGCTATAAGAAAAGTAAGCCCCTCACCGGCATTCCATTCTTTCTTTCTGAAAATATTGATGTAAAAGTATGAGTTGAAAGAAGCAACAATGTCATCTCCCTCTTCATCTAGCCATAACTTGAAGGGCTGGTGGTACATAATCCGGCCAGACGTATTTTGAAGGCGAACAATATCGTTCTGCGAGTCGGGAGTTAGCTGCAGGGCGCCCTCATCGATGGAAGACGACCCTTGAGTGAAGGAGAAGTCTTGGTTGTGCTCCCTTTCATTGAATCCAACATAGGCAAAACGAGGCTCAAGGCTCGGTTGGCTGCTCACAGCTCCAAAGAGCAATACCACACAAGCCACAAGAACAGCAACCAAGGTACTGGAATCTCTCTTACACAGAATCATTTTCCTTGACAAATTCGTCAACTAACTCAGAATTCTCACAGGAAAACCAGAACATACAGATGAATTCCAGGCTCTGTAGATCAGCAATGAGAATCTCGAATCCAGATCGAGATCTAAGTTCTTCCTTTGTGAAACTGTTTGAGAAAAAGCTAGAG

mRNA sequence

AATCAACTTGATGGAGCTCTCGGGACGTTGGGAGTTCGAACCCAGGGACTGAAGCACAGGACCAGCTATGGTGAAACTTCATCAAAAAGAGAGCTCCTGGTCTCCTGCCACAAACAATCTCAAGCACCACTGCCCCAAAACCATATACGTCGGATTCTGGAGTTGCCCTTCCTTCGTGGAAGCATTCAGGAGCAACATAACCCATTGTGCCTGCAACTCCTCCATGTTGGAGGTCTGCATAAGAGTTTCTTTCAGGGTCCAACGCTCTCGCAAGGCCGAAATCTCCTAGACGAGCATGGAAGTCGGAATCAAATGTTCCAAATCCAGCATCCATTCCAAGACACAGTTCAACTGAATTTCCGGGCTGCCTGTGGAAGCAGAAAATCCAATACCGATATGGTTGTCGTCGGGGTCGAAATCCTGCTTCTGAGTATCGAATTCAATGGCTACAATTTGGTTGGTGCTGCTGCCATCGGTAGTTGCATTGGTGAGGCCCATCCACTGCCCCCAGCTCTGATCAGGCAAAACGAGGCTCAAGGCTCGGTTGGCTGCTCACAGCTCCAAAGAGCAATACCACACAAGCCACAAGAACAGCAACCAAGGTACTGGAATCTCTCTTACACAGAATCATTTTCCTTGACAAATTCGTCAACTAACTCAGAATTCTCACAGGAAAACCAGAACATACAGATGAATTCCAGGCTCTGTAGATCAGCAATGAGAATCTCGAATCCAGATCGAGATCTAAGTTCTTCCTTTGTGAAACTGTTTGAGAAAAAGCTAGAG

Coding sequence (CDS)

AATCAACTTGATGGAGCTCTCGGGACGTTGGGAGTTCGAACCCAGGGACTGAAGCACAGGACCAGCTATGGTGAAACTTCATCAAAAAGAGAGCTCCTGGTCTCCTGCCACAAACAATCTCAAGCACCACTGCCCCAAAACCATATACGTCGGATTCTGGAGTTGCCCTTCCTTCGTGGAAGCATTCAGGAGCAACATAACCCATTGTGCCTGCAACTCCTCCATGTTGGAGGTCTGCATAAGAGTTTCTTTCAGGGTCCAACGCTCTCGCAAGGCCGAAATCTCCTAGACGAGCATGGAAGTCGGAATCAAATGTTCCAAATCCAGCATCCATTCCAAGACACAGTTCAACTGAATTTCCGGGCTGCCTGTGGAAGCAGAAAATCCAATACCGATATGGTTGTCGTCGGGGTCGAAATCCTGCTTCTGAGTATCGAATTCAATGGCTACAATTTGGTTGGTGCTGCTGCCATCGGTAGTTGCATTGGTGAGGCCCATCCACTGCCCCCAGCTCTGATCAGGCAAAACGAGGCTCAAGGCTCGGTTGGCTGCTCACAGCTCCAAAGAGCAATACCACACAAGCCACAAGAACAGCAACCAAGGTACTGGAATCTCTCTTACACAGAATCATTTTCCTTGACAAATTCGTCAACTAACTCAGAATTCTCACAGGAAAACCAGAACATACAGATGAATTCCAGGCTCTGTAGATCAGCAATGAGAATCTCGAATCCAGATCGAGATCTAAGTTCTTCCTTTGTGAAACTGTTTGAGAAAAAGCTAGAG

Protein sequence

NQLDGALGTLGVRTQGLKHRTSYGETSSKRELLVSCHKQSQAPLPQNHIRRILELPFLRGSIQEQHNPLCLQLLHVGGLHKSFFQGPTLSQGRNLLDEHGSRNQMFQIQHPFQDTVQLNFRAACGSRKSNTDMVVVGVEILLLSIEFNGYNLVGAAAIGSCIGEAHPLPPALIRQNEAQGSVGCSQLQRAIPHKPQEQQPRYWNLSYTESFSLTNSSTNSEFSQENQNIQMNSRLCRSAMRISNPDRDLSSSFVKLFEKKLE

Homology

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BLAST of Carg18077 vs. NCBI nr
Match: KAG7022805.1 (hypothetical protein SDJN02_16541, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 523.5 bits (1347), Expect = 1.1e-144
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0


Query: 1   NQLDGALGTLGVRTQGLKHRTSYGETSSKRELLVSCHKQSQAPLPQNHIRRILELPFLRG 60
           NQLDGALGTLGVRTQGLKHRTSYGETSSKRELLVSCHKQSQAPLPQNHIRRILELPFLRG
Sbjct: 1   NQLDGALGTLGVRTQGLKHRTSYGETSSKRELLVSCHKQSQAPLPQNHIRRILELPFLRG 60

Query: 61  SIQEQHNPLCLQLLHVGGLHKSFFQGPTLSQGRNLLDEHGSRNQMFQIQHPFQDTVQLNF 120
           SIQEQHNPLCLQLLHVGGLHKSFFQGPTLSQGRNLLDEHGSRNQMFQIQHPFQDTVQLNF
Sbjct: 61  SIQEQHNPLCLQLLHVGGLHKSFFQGPTLSQGRNLLDEHGSRNQMFQIQHPFQDTVQLNF 120

Query: 121 RAACGSRKSNTDMVVVGVEILLLSIEFNGYNLVGAAAIGSCIGEAHPLPPALIRQNEAQG 180
           RAACGSRKSNTDMVVVGVEILLLSIEFNGYNLVGAAAIGSCIGEAHPLPPALIRQNEAQG
Sbjct: 121 RAACGSRKSNTDMVVVGVEILLLSIEFNGYNLVGAAAIGSCIGEAHPLPPALIRQNEAQG 180

Query: 181 SVGCSQLQRAIPHKPQEQQPRYWNLSYTESFSLTNSSTNSEFSQENQNIQMNSRLCRSAM 240
           SVGCSQLQRAIPHKPQEQQPRYWNLSYTESFSLTNSSTNSEFSQENQNIQMNSRLCRSAM
Sbjct: 181 SVGCSQLQRAIPHKPQEQQPRYWNLSYTESFSLTNSSTNSEFSQENQNIQMNSRLCRSAM 240

Query: 241 RISNPDRDLSSSFVKLFEKKLE 263
           RISNPDRDLSSSFVKLFEKKLE
Sbjct: 241 RISNPDRDLSSSFVKLFEKKLE 262

The following BLAST results are available for this feature:

BLAST of Carg18077 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022805.1	1.1e-144	100.00	hypothetical protein SDJN02_16541, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg18077 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg18077 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg18077 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18077-RA	Carg18077-RA	mRNA