Carg18056 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18056
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	glycine-rich protein DC7.1-like
Location	Carg_Chr11: 11903746 .. 11904411 (-)
RNA-Seq Expression	Carg18056
Synteny	Carg18056

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCATCTCTTCTACAACTTTCTCTATATTTCTTTAGCTCGAGCGTTTGCAATGAATTCTAAAGCTTTCATCATCCTCGGTCTCCTTTTCGCCGTTGTCATCCTCCTCTCCTCGGAGGAGGCTTCAGCTACCGCAAGAGGTCTAAAGAGCGGTAAAATTTTATTCCATATGTTCGTTCGATGATATCGTTAATGATTACATTTAAATTATGGACTTAGCTTACTATTCCTACAGTTGAAGAAGCCGTGATGGAGACTAACGGAGATGGAATCGAGGATGACAAGCGTCGTTTCGGGGGAGGCCACCATGGGCACAGACATCACCACAGGCACCACCACAGGCACCGCCACCATTGTCGTCACGGTTGCTCGGCTGATGAGGATGTTAATGAAGATCCACAAGCCAAGCCTAACAATTGAAAATGGTGTTGGTTCAAGTCAATGTTATAGTGATTGTGTAAGTTATGAATAAATGCATTATTATGCTTGAGTTGGTAAGGCTTGTTCGTGTCCATGTAAGCTTGCCCAAGTACAAGGGCATTAGTTAATCTCTAATAAAGAGATTAATTGTGTGTATTTTGAGCTTTATTGTATAAGTTAATTAAATAATCATGTGAAATATTGTTCCTAATAATTTCTTTCTTCTAATTCTAACACTTTTTTATATTC

mRNA sequence

TCATCTCTTCTACAACTTTCTCTATATTTCTTTAGCTCGAGCGTTTGCAATGAATTCTAAAGCTTTCATCATCCTCGGTCTCCTTTTCGCCGTTGTCATCCTCCTCTCCTCGGAGGAGGCTTCAGCTACCGCAAGAGGTCTAAAGAGCGTTGAAGAAGCCGTGATGGAGACTAACGGAGATGGAATCGAGGATGACAAGCGTCGTTTCGGGGGAGGCCACCATGGGCACAGACATCACCACAGGCACCACCACAGGCACCGCCACCATTGTCGTCACGGTTGCTCGGCTGATGAGGATGTTAATGAAGATCCACAAGCCAAGCCTAACAATTGAAAATGGTGTTGGTTCAAGTCAATGTTATAGTGATTGTGTAAGTTATGAATAAATGCATTATTATGCTTGAGTTGGTAAGGCTTGTTCGTGTCCATGTAAGCTTGCCCAAGTACAAGGGCATTAGTTAATCTCTAATAAAGAGATTAATTGTGTGTATTTTGAGCTTTATTGTATAAGTTAATTAAATAATCATGTGAAATATTGTTCCTAATAATTTCTTTCTTCTAATTCTAACACTTTTTTATATTC

Coding sequence (CDS)

ATGAATTCTAAAGCTTTCATCATCCTCGGTCTCCTTTTCGCCGTTGTCATCCTCCTCTCCTCGGAGGAGGCTTCAGCTACCGCAAGAGGTCTAAAGAGCGTTGAAGAAGCCGTGATGGAGACTAACGGAGATGGAATCGAGGATGACAAGCGTCGTTTCGGGGGAGGCCACCATGGGCACAGACATCACCACAGGCACCACCACAGGCACCGCCACCATTGTCGTCACGGTTGCTCGGCTGATGAGGATGTTAATGAAGATCCACAAGCCAAGCCTAACAATTGA

Protein sequence

MNSKAFIILGLLFAVVILLSSEEASATARGLKSVEEAVMETNGDGIEDDKRRFGGGHHGHRHHHRHHHRHRHHCRHGCSADEDVNEDPQAKPNN

Homology

[Close]

BLAST of Carg18056 vs. NCBI nr
Match: KAG6589124.1 (hypothetical protein SDJN03_17689, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022826.1 hypothetical protein SDJN02_16562 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 181.0 bits (458), Expect = 4.7e-42
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MNSKAFIILGLLFAVVILLSSEEASATARGLKSVEEAVMETNGDGIEDDKRRFGGGHHGH 60
          MNSKAFIILGLLFAVVILLSSEEASATARGLKSVEEAVMETNGDGIEDDKRRFGGGHHGH
Sbjct: 1  MNSKAFIILGLLFAVVILLSSEEASATARGLKSVEEAVMETNGDGIEDDKRRFGGGHHGH 60

Query: 61 RHHHRHHHRHRHHCRHGCSADEDVNEDPQAKPNN 95
          RHHHRHHHRHRHHCRHGCSADEDVNEDPQAKPNN
Sbjct: 61 RHHHRHHHRHRHHCRHGCSADEDVNEDPQAKPNN 94

[Close]

BLAST of Carg18056 vs. NCBI nr
Match: XP_023529828.1 (glycine-rich protein DC7.1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 179.5 bits (454), Expect = 1.4e-41
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MNSKAFIILGLLFAVVILLSSEEASATARGLKSVEEAVMETNGDGIEDDKRRFGGGHHGH 60
          MNSKAFIILGLLFAVVILLSSEEASATARGLKSVEE VMETNGDGIEDDKRRFGGGHHGH
Sbjct: 1  MNSKAFIILGLLFAVVILLSSEEASATARGLKSVEEVVMETNGDGIEDDKRRFGGGHHGH 60

Query: 61 RHHHRHHHRHRHHCRHGCSADEDVNEDPQAKPNN 95
          RHHHRHHHRHRHHCRHGCSADEDVNEDPQAKPNN
Sbjct: 61 RHHHRHHHRHRHHCRHGCSADEDVNEDPQAKPNN 94

[Close]

BLAST of Carg18056 vs. NCBI nr
Match: XP_022930749.1 (glycine-rich protein DC7.1-like [Cucurbita moschata])

HSP 1 Score: 179.1 bits (453), Expect = 1.8e-41
Identity = 92/94 (97.87%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MNSKAFIILGLLFAVVILLSSEEASATARGLKSVEEAVMETNGDGIEDDKRRFGGGHHGH 60
          MNSKAFIILGLLF +VILLSSEEASATARGLKSVEEAVMETNGDGIEDDKRRFGGGHHGH
Sbjct: 1  MNSKAFIILGLLFTIVILLSSEEASATARGLKSVEEAVMETNGDGIEDDKRRFGGGHHGH 60

Query: 61 RHHHRHHHRHRHHCRHGCSADEDVNEDPQAKPNN 95
          RHHHRHHHRHRHHCRHGCSADEDVNEDPQAKPNN
Sbjct: 61 RHHHRHHHRHRHHCRHGCSADEDVNEDPQAKPNN 94

[Close]

BLAST of Carg18056 vs. NCBI nr
Match: XP_022989495.1 (glycine-rich protein DC7.1-like [Cucurbita maxima])

HSP 1 Score: 167.5 bits (423), Expect = 5.3e-38
Identity = 89/94 (94.68%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MNSKAFIILGLLFAVVILLSSEEASATARGLKSVEEAVMETNGDGIEDDKRRFGGGHHGH 60
          MNSKAFIILGLLFAVVILLSSEEA+ATARGLKSVEEAVMETNGDGIEDDKRRFGGGHHGH
Sbjct: 1  MNSKAFIILGLLFAVVILLSSEEATATARGLKSVEEAVMETNGDGIEDDKRRFGGGHHGH 60

Query: 61 RHHHRHHHRHRHHCRHGCSADEDVNEDPQAKPNN 95
          +HHHRHHHR   HCRHGCSADEDVNEDPQAKPNN
Sbjct: 61 KHHHRHHHR---HCRHGCSADEDVNEDPQAKPNN 91

[Close]

BLAST of Carg18056 vs. NCBI nr
Match: XP_022136255.1 (glycine-rich protein DC7.1-like [Momordica charantia])

HSP 1 Score: 87.4 bits (215), Expect = 7.0e-14
Identity = 62/98 (63.27%), Postives = 68/98 (69.39%), Query Frame = 0


Query: 1  MNSKAFIILGLLFAVVILLSSEEASATARGLKSVEEAVMETNGDGIEDDKRRFGGGHHGH 60
          M+SK  I LGLLFAVV+LLSSEE +ATAR LKSVEE + ETN +GIEDDKR    GHHGH
Sbjct: 1  MSSKTLIFLGLLFAVVVLLSSEEVTATARDLKSVEEVMTETN-NGIEDDKR----GHHGH 60

Query: 61 RHHH-RHHHRHRHHCRHGCSADEDV---NEDPQAKPNN 95
           HHH R  H H HHC     ADED     E+ Q KPNN
Sbjct: 61 HHHHRRRRHCHHHHCSF---ADEDEAVDEEEAQTKPNN 90

[Close]

BLAST of Carg18056 vs. ExPASy TrEMBL
Match: A0A6J1ESD5 (glycine-rich protein DC7.1-like OS=Cucurbita moschata OX=3662 GN=LOC111437131 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 8.6e-42
Identity = 92/94 (97.87%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MNSKAFIILGLLFAVVILLSSEEASATARGLKSVEEAVMETNGDGIEDDKRRFGGGHHGH 60
          MNSKAFIILGLLF +VILLSSEEASATARGLKSVEEAVMETNGDGIEDDKRRFGGGHHGH
Sbjct: 1  MNSKAFIILGLLFTIVILLSSEEASATARGLKSVEEAVMETNGDGIEDDKRRFGGGHHGH 60

Query: 61 RHHHRHHHRHRHHCRHGCSADEDVNEDPQAKPNN 95
          RHHHRHHHRHRHHCRHGCSADEDVNEDPQAKPNN
Sbjct: 61 RHHHRHHHRHRHHCRHGCSADEDVNEDPQAKPNN 94

[Close]

BLAST of Carg18056 vs. ExPASy TrEMBL
Match: A0A6J1JMI7 (glycine-rich protein DC7.1-like OS=Cucurbita maxima OX=3661 GN=LOC111486537 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.6e-38
Identity = 89/94 (94.68%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MNSKAFIILGLLFAVVILLSSEEASATARGLKSVEEAVMETNGDGIEDDKRRFGGGHHGH 60
          MNSKAFIILGLLFAVVILLSSEEA+ATARGLKSVEEAVMETNGDGIEDDKRRFGGGHHGH
Sbjct: 1  MNSKAFIILGLLFAVVILLSSEEATATARGLKSVEEAVMETNGDGIEDDKRRFGGGHHGH 60

Query: 61 RHHHRHHHRHRHHCRHGCSADEDVNEDPQAKPNN 95
          +HHHRHHHR   HCRHGCSADEDVNEDPQAKPNN
Sbjct: 61 KHHHRHHHR---HCRHGCSADEDVNEDPQAKPNN 91

[Close]

BLAST of Carg18056 vs. ExPASy TrEMBL
Match: A0A6J1C3E0 (glycine-rich protein DC7.1-like OS=Momordica charantia OX=3673 GN=LOC111007997 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.4e-14
Identity = 62/98 (63.27%), Postives = 68/98 (69.39%), Query Frame = 0


Query: 1  MNSKAFIILGLLFAVVILLSSEEASATARGLKSVEEAVMETNGDGIEDDKRRFGGGHHGH 60
          M+SK  I LGLLFAVV+LLSSEE +ATAR LKSVEE + ETN +GIEDDKR    GHHGH
Sbjct: 1  MSSKTLIFLGLLFAVVVLLSSEEVTATARDLKSVEEVMTETN-NGIEDDKR----GHHGH 60

Query: 61 RHHH-RHHHRHRHHCRHGCSADEDV---NEDPQAKPNN 95
           HHH R  H H HHC     ADED     E+ Q KPNN
Sbjct: 61 HHHHRRRRHCHHHHCSF---ADEDEAVDEEEAQTKPNN 90

[Close]

BLAST of Carg18056 vs. ExPASy TrEMBL
Match: A0A6J1C3T3 (glycine-rich protein 3 short isoform-like OS=Momordica charantia OX=3673 GN=LOC111007996 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.4e-04
Identity = 56/131 (42.75%), Postives = 67/131 (51.15%), Query Frame = 0


Query: 1   MNSKAFIILGLLFAVVILLSSEEASATARGLKSVEEAVMETNGDGIEDDK---------- 60
           MNSKAFI+LGLLFAVV+LLSS+    TAR LK   E VMET  DG+ED K          
Sbjct: 1   MNSKAFILLGLLFAVVVLLSSD---VTARDLKG--ETVMET--DGVEDAKDRSYDRGHGH 60

Query: 61  ---------RRFGGGHHGHRHHH------RHHHRHRHHCRHGCS------------ADED 95
                     R+GGG+ GH  H+      R  +    HC HGC             A E 
Sbjct: 61  YGGGYDRGHSRYGGGYPGHGGHYGGGYPGRGRYGGGRHCHHGCCGYHGSCGRCCSYAGEA 120

The following BLAST results are available for this feature:

BLAST of Carg18056 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589124.1	4.7e-42	100.00	hypothetical protein SDJN03_17689, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023529828.1	1.4e-41	98.94	glycine-rich protein DC7.1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022930749.1	1.8e-41	97.87	glycine-rich protein DC7.1-like [Cucurbita moschata]	[more]
XP_022989495.1	5.3e-38	94.68	glycine-rich protein DC7.1-like [Cucurbita maxima]	[more]
XP_022136255.1	7.0e-14	63.27	glycine-rich protein DC7.1-like [Momordica charantia]	[more]

BLAST of Carg18056 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg18056 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ESD5	8.6e-42	97.87	glycine-rich protein DC7.1-like OS=Cucurbita moschata OX=3662 GN=LOC111437131 PE...	[more]
A0A6J1JMI7	2.6e-38	94.68	glycine-rich protein DC7.1-like OS=Cucurbita maxima OX=3661 GN=LOC111486537 PE=4...	[more]
A0A6J1C3E0	3.4e-14	63.27	glycine-rich protein DC7.1-like OS=Momordica charantia OX=3673 GN=LOC111007997 P...	[more]
A0A6J1C3T3	1.4e-04	42.75	glycine-rich protein 3 short isoform-like OS=Momordica charantia OX=3673 GN=LOC1...	[more]

BLAST of Carg18056 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18056-RA	Carg18056-RA	mRNA