Carg18050 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18050
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Nucleic acid-binding, OB-fold containing protein
Location	Carg_Chr11: 11947231 .. 11948814 (+)
RNA-Seq Expression	Carg18050
Synteny	Carg18050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTAAATTCTTAGGGTTAGGGTTTTGATCCTCAGGTTCGATTTCATTCTCCATTTTCACGTTTCCCTTTCATCGGCGACAGGGTTTCGTTCTGTTACTTCGATTTCCATGGCGACGCCAGCAGTGAATGCCCCAGCAAAGAGGAAGCCTGTGTTTATTAAAGTTGAAGATCTAAAGCCTGGTTCGAGCGGCCACACTCTCACCGTGAAGGTCGTGAGCTCCAAAAATGTTAAGGTTGTCAATAAAGGAGGACGATCCGCCATGCCTACGGCTCGCCCTCAGCAATTAACTCGCATCTCTGAATGTCTTGTTGGTGATGAGACTGGTTCTATCGTCTTCACAGCTCGAAATGACCAAGGTACGTTTCTGTGTTGATGTAGAATGTTCGTGAACCTAATTTGTCTCATTTTTTGGAGGTGATTTTGTGTATGGTTACTAAAATAGTTGGATAGACTGGATGGATATGGATTTCCTTTTGCTTAGATTTTTTTTTTTAGAATTGAGTGCTCTTTGTTTCTGTTGGAATGTTTTGCTGTGAGTGATTTTCTTTTTTGTTTACGAACTTCATCTTTGTTCTTGGTGAATTAAGTATTCTTCTCTGTAACTTTTTTTTTTTATAACTAGGAATGAAAACTTTTCCTTGGTAATTGAGAAATTTCCTTTGGTAGTTACAATGAGTCCCAAAAAAAAAAAAAAAATTATATAAGCTTGGGGGATCTTTTGTTTAGTTAATTTGTGTTTGAATGGTTATGTTCTTATGGTTGTGTATAAACAAGCAACGTACTTCTCTAAATTCTTTTGCATCAAAAGATATTCTGAAGCTGGATGATGATATTTTGTTATTGTTGGTTATTGAAATGGAAGCAAGAACTTACATTAGTGGGAAATTTGAGTTTGTGTTCAACTTATTGTGGGAGTTCTAGAGGCTGTGGAGTAAAATCTTCAATCATTGCTCCCTACCCATCACCAACAAAATGAAAAGGTTTCAGAGCTCATGGCGTTTTCATGTCATTCTGAACCAATGTTTGTAATTTTTGCAGTTGATCTCATGAAGCCAGGAAACACTGTGACCCTGCGGAATGCTAAGATTGACATGTTCAAGGGTTCTATGAGGTTAGCAGTAGATAAATGGGGACGAATTGAAGTCGCTGAACCAGCCGACTTCGAGGTTAAAGAGGACAACAATCTGTCACTGGTTGAGTATGAACTGGTTAATGTTGAAGAGTGACTTCGAAGTATGCAGTGTTAATTTATCATGGATTTACTTTCTCTATTGTGTGGTGGACTGCTTTTTTACTGGTATACAGTTTTATATGGGAACACAAATCTTGCTGGAGGGTAATATAAGTTGACTATTGCTGTGACTACTAAGTGTTCTACCTGCTTAATTTGGGTCTGAATGTGATACAGATCTTGGAAGGCAAGGCCAAATGTTAATTTCTCTGCTTGTATTGGTTGGAAAAGTATATAGAAGGTTTTACTCATGGATCTTCGTTATGTTGCATCACTTGTCTAACTATGGTGACATTCAGCTAACTTCTTCATCAATTGTTTCCTTATCAAAAGGTATACTGAGCTTTCATC

mRNA sequence

AATTAAATTCTTAGGGTTAGGGTTTTGATCCTCAGGTTCGATTTCATTCTCCATTTTCACGTTTCCCTTTCATCGGCGACAGGGTTTCGTTCTGTTACTTCGATTTCCATGGCGACGCCAGCAGTGAATGCCCCAGCAAAGAGGAAGCCTGTGTTTATTAAAGTTGAAGATCTAAAGCCTGGTTCGAGCGGCCACACTCTCACCGTGAAGGTCGTGAGCTCCAAAAATGTTAAGGTTGTCAATAAAGGAGGACGATCCGCCATGCCTACGGCTCGCCCTCAGCAATTAACTCGCATCTCTGAATGTCTTGTTGGTGATGAGACTGGTTCTATCGTCTTCACAGCTCGAAATGACCAAGTTGATCTCATGAAGCCAGGAAACACTGTGACCCTGCGGAATGCTAAGATTGACATGTTCAAGGGTTCTATGAGGTTAGCAGTAGATAAATGGGGACGAATTGAAGTCGCTGAACCAGCCGACTTCGAGGTTAAAGAGGACAACAATCTGTCACTGGTTGAGTATGAACTGGTTAATGTTGAAGAGTGACTTCGAAGTATGCAGTGTTAATTTATCATGGATTTACTTTCTCTATTGTGTGGTGGACTGCTTTTTTACTGGTATACAGTTTTATATGGGAACACAAATCTTGCTGGAGGGTAATATAAGTTGACTATTGCTGTGACTACTAAGTGTTCTACCTGCTTAATTTGGGTCTGAATGTGATACAGATCTTGGAAGGCAAGGCCAAATGTTAATTTCTCTGCTTGTATTGGTTGGAAAAGTATATAGAAGGTTTTACTCATGGATCTTCGTTATGTTGCATCACTTGTCTAACTATGGTGACATTCAGCTAACTTCTTCATCAATTGTTTCCTTATCAAAAGGTATACTGAGCTTTCATC

Coding sequence (CDS)

ATGGCGACGCCAGCAGTGAATGCCCCAGCAAAGAGGAAGCCTGTGTTTATTAAAGTTGAAGATCTAAAGCCTGGTTCGAGCGGCCACACTCTCACCGTGAAGGTCGTGAGCTCCAAAAATGTTAAGGTTGTCAATAAAGGAGGACGATCCGCCATGCCTACGGCTCGCCCTCAGCAATTAACTCGCATCTCTGAATGTCTTGTTGGTGATGAGACTGGTTCTATCGTCTTCACAGCTCGAAATGACCAAGTTGATCTCATGAAGCCAGGAAACACTGTGACCCTGCGGAATGCTAAGATTGACATGTTCAAGGGTTCTATGAGGTTAGCAGTAGATAAATGGGGACGAATTGAAGTCGCTGAACCAGCCGACTTCGAGGTTAAAGAGGACAACAATCTGTCACTGGTTGAGTATGAACTGGTTAATGTTGAAGAGTGA

Protein sequence

MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPADFEVKEDNNLSLVEYELVNVEE

Homology

[Close]

BLAST of Carg18050 vs. NCBI nr
Match: XP_022988994.1 (uncharacterized protein At4g28440-like [Cucurbita maxima] >XP_023529810.1 uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo] >KAG7022832.1 hypothetical protein SDJN02_16568 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 284.6 bits (727), Expect = 4.6e-73
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQL 60
           MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQL
Sbjct: 1   MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120
           TRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120

Query: 121 EPADFEVKEDNNLSLVEYELVNVEE 146
           EPADFEVKEDNNLSLVEYELVNVEE
Sbjct: 121 EPADFEVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of Carg18050 vs. NCBI nr
Match: KAG6589134.1 (hypothetical protein SDJN03_17699, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 283.1 bits (723), Expect = 1.3e-72
Identity = 144/145 (99.31%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQL 60
           MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQL
Sbjct: 1   MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120
           TRISECLVGDETGSIVFTARNDQVDL+KPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDLVKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120

Query: 121 EPADFEVKEDNNLSLVEYELVNVEE 146
           EPADFEVKEDNNLSLVEYELVNVEE
Sbjct: 121 EPADFEVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of Carg18050 vs. NCBI nr
Match: XP_022930657.1 (uncharacterized protein At4g28440-like [Cucurbita moschata])

HSP 1 Score: 281.6 bits (719), Expect = 3.9e-72
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQL 60
           MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQL
Sbjct: 1   MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120
           TRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120

Query: 121 EPADFEVKEDNNLSLVEYELVNVEE 146
           EPADFEV EDNNLSLVEYELVNVEE
Sbjct: 121 EPADFEVIEDNNLSLVEYELVNVEE 145

[Close]

BLAST of Carg18050 vs. NCBI nr
Match: XP_038887250.1 (uncharacterized protein At4g28440-like [Benincasa hispida])

HSP 1 Score: 273.1 bits (697), Expect = 1.4e-69
Identity = 137/145 (94.48%), Postives = 143/145 (98.62%), Query Frame = 0


Query: 1   MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQL 60
           MATPAVNAPAKRKPVF+KVE+LKPG+SGHTLTVKVVSSKNVKVVNKGGRS M TARPQQL
Sbjct: 1   MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120
           TRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKIDMFKGSMRLAVDKWGR+EVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120

Query: 121 EPADFEVKEDNNLSLVEYELVNVEE 146
           EPA+FEVKEDNNLSLVEYELVNVEE
Sbjct: 121 EPANFEVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of Carg18050 vs. NCBI nr
Match: XP_008455497.1 (PREDICTED: uncharacterized protein At4g28440 [Cucumis melo] >KAA0059117.1 uncharacterized protein E6C27_scaffold430G00240 [Cucumis melo var. makuwa] >TYK21622.1 uncharacterized protein E5676_scaffold150G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 271.6 bits (693), Expect = 4.1e-69
Identity = 136/145 (93.79%), Postives = 142/145 (97.93%), Query Frame = 0


Query: 1   MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQL 60
           MATPA NAPAKRKPVF+KVE+LKPG+SGHTLTVKVVSSKNVKVVNKGGRS M TARPQQL
Sbjct: 1   MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120
           TRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKIDMFKGSMRLAVDKWGR+EVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120

Query: 121 EPADFEVKEDNNLSLVEYELVNVEE 146
           EPA+FEVKEDNNLSLVEYELVNVEE
Sbjct: 121 EPANFEVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of Carg18050 vs. ExPASy Swiss-Prot
Match: O49453 (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.0e-46
Identity = 93/133 (69.92%), Postives = 107/133 (80.45%), Query Frame = 0


Query: 11  KRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGD 70
           KRKPVF+KVE LKPG++GHTLTVKV+ +  V  V +  R A   +RP Q +RI ECL+GD
Sbjct: 17  KRKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGD 76

Query: 71  ETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPADFEVKED 130
           ETG I+FTARNDQVDLMKPG TV LRN++IDMFKG+MRL VDKWGRIE    A F VKED
Sbjct: 77  ETGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKED 136

Query: 131 NNLSLVEYELVNV 144
           NNLSLVEYEL+NV
Sbjct: 137 NNLSLVEYELINV 149

[Close]

BLAST of Carg18050 vs. ExPASy Swiss-Prot
Match: Q97W73 (Single-stranded DNA binding protein Ssb OS=Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) OX=273057 GN=ssb PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 6.2e-04
Identity = 32/117 (27.35%), Postives = 54/117 (46.15%), Query Frame = 0


Query: 18  KVEDLKPGSSGHTLTVKVVSSKNVK-VVNKGGRSAMPTARPQQLTRISECLVGDETGSIV 77
           KV +LKP      +TV+V+ +   + +  K G           +  ISE +VGDETG + 
Sbjct: 4   KVGNLKPNMESVNVTVRVLEASEARQIQTKNG-----------VRTISEAIVGDETGRVK 63

Query: 78  FTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPADFEVKEDNNL 134
            T        +K G  V + NA    FKG ++L  +   + ++AE ++    E + +
Sbjct: 64  LTLWGKHAGSIKEGQVVKIENAWTTAFKGQVQL--NAGSKTKIAEASEDGFPESSQI 107

[Close]

BLAST of Carg18050 vs. ExPASy TrEMBL
Match: A0A6J1JN47 (uncharacterized protein At4g28440-like OS=Cucurbita maxima OX=3661 GN=LOC111486189 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.2e-73
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQL 60
           MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQL
Sbjct: 1   MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120
           TRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120

Query: 121 EPADFEVKEDNNLSLVEYELVNVEE 146
           EPADFEVKEDNNLSLVEYELVNVEE
Sbjct: 121 EPADFEVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of Carg18050 vs. ExPASy TrEMBL
Match: A0A6J1ER67 (uncharacterized protein At4g28440-like OS=Cucurbita moschata OX=3662 GN=LOC111437058 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 1.9e-72
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQL 60
           MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQL
Sbjct: 1   MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120
           TRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120

Query: 121 EPADFEVKEDNNLSLVEYELVNVEE 146
           EPADFEV EDNNLSLVEYELVNVEE
Sbjct: 121 EPADFEVIEDNNLSLVEYELVNVEE 145

[Close]

BLAST of Carg18050 vs. ExPASy TrEMBL
Match: A0A5A7UWS4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold150G00200 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.0e-69
Identity = 136/145 (93.79%), Postives = 142/145 (97.93%), Query Frame = 0


Query: 1   MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQL 60
           MATPA NAPAKRKPVF+KVE+LKPG+SGHTLTVKVVSSKNVKVVNKGGRS M TARPQQL
Sbjct: 1   MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120
           TRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKIDMFKGSMRLAVDKWGR+EVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120

Query: 121 EPADFEVKEDNNLSLVEYELVNVEE 146
           EPA+FEVKEDNNLSLVEYELVNVEE
Sbjct: 121 EPANFEVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of Carg18050 vs. ExPASy TrEMBL
Match: A0A1S3C119 (uncharacterized protein At4g28440 OS=Cucumis melo OX=3656 GN=LOC103495649 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.0e-69
Identity = 136/145 (93.79%), Postives = 142/145 (97.93%), Query Frame = 0


Query: 1   MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQL 60
           MATPA NAPAKRKPVF+KVE+LKPG+SGHTLTVKVVSSKNVKVVNKGGRS M TARPQQL
Sbjct: 1   MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120
           TRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKIDMFKGSMRLAVDKWGR+EVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120

Query: 121 EPADFEVKEDNNLSLVEYELVNVEE 146
           EPA+FEVKEDNNLSLVEYELVNVEE
Sbjct: 121 EPANFEVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of Carg18050 vs. ExPASy TrEMBL
Match: A0A0A0K1C6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G038160 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.3e-69
Identity = 136/145 (93.79%), Postives = 141/145 (97.24%), Query Frame = 0


Query: 1   MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQL 60
           MATPA NAPAKRKPVF+KVE+LKPG+SGHTLTVKVVSSKNVKVVNKGGRS M TARPQQL
Sbjct: 1   MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120
           TRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGR+EVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120

Query: 121 EPADFEVKEDNNLSLVEYELVNVEE 146
           EPA+FE KEDNNLSLVEYELVNVEE
Sbjct: 121 EPANFEAKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of Carg18050 vs. TAIR 10
Match: AT4G28440.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 187.6 bits (475), Expect = 7.2e-48
Identity = 93/133 (69.92%), Postives = 107/133 (80.45%), Query Frame = 0


Query: 11  KRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGD 70
           KRKPVF+KVE LKPG++GHTLTVKV+ +  V  V +  R A   +RP Q +RI ECL+GD
Sbjct: 17  KRKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGD 76

Query: 71  ETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPADFEVKED 130
           ETG I+FTARNDQVDLMKPG TV LRN++IDMFKG+MRL VDKWGRIE    A F VKED
Sbjct: 77  ETGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKED 136

Query: 131 NNLSLVEYELVNV 144
           NNLSLVEYEL+NV
Sbjct: 137 NNLSLVEYELINV 149

[Close]

BLAST of Carg18050 vs. TAIR 10
Match: AT2G33845.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 187.2 bits (474), Expect = 9.4e-48
Identity = 99/135 (73.33%), Postives = 108/135 (80.00%), Query Frame = 0


Query: 11  KRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGD 70
           K+KPVF+KV+ LKPG+SGHTLTVKVV   +V    K G ++    RP    RISECLVGD
Sbjct: 52  KKKPVFVKVDQLKPGTSGHTLTVKVVDQNSVP--QKPGAASSSHLRP---ARISECLVGD 111

Query: 71  ETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPADFEVKED 130
           ET  I+FTARNDQV+LMKPG TV LRNAKIDMFKGSMRLAVDKWGRIE  EPAD  VKED
Sbjct: 112 ETACILFTARNDQVELMKPGATVNLRNAKIDMFKGSMRLAVDKWGRIEATEPADITVKED 171

Query: 131 NNLSLVEYELVNVEE 146
           NNLSLVEYELVNV E
Sbjct: 172 NNLSLVEYELVNVVE 181

[Close]

BLAST of Carg18050 vs. TAIR 10
Match: AT1G23750.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 180.6 bits (457), Expect = 8.8e-46
Identity = 93/134 (69.40%), Postives = 110/134 (82.09%), Query Frame = 0


Query: 12  RKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDE 71
           +KP F KV+ L+PG+SGH + VK+VS+   K+V + GR+  P AR     RISEC+VGDE
Sbjct: 10  KKPAFTKVDQLRPGTSGHNVNVKIVST---KMVLQKGRADGPQARQ---LRISECIVGDE 69

Query: 72  TGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPADFEVKEDN 131
           TG IVFTARNDQVDLMK G+TVTLRNAKIDM+KGSMRLAVDKWGR+EV EPA F+VKED 
Sbjct: 70  TGVIVFTARNDQVDLMKEGSTVTLRNAKIDMYKGSMRLAVDKWGRVEVTEPASFKVKEDT 129

Query: 132 NLSLVEYELVNVEE 146
           N+SL+EYELVNV E
Sbjct: 130 NMSLIEYELVNVVE 137

[Close]

BLAST of Carg18050 vs. TAIR 10
Match: AT1G10590.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 175.6 bits (444), Expect = 2.8e-44
Identity = 92/136 (67.65%), Postives = 111/136 (81.62%), Query Frame = 0


Query: 10  AKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVG 69
           A RKPVF KV +L+PG++GH+L VKVV++K V +   GGR   P +R     RI+ECLVG
Sbjct: 7   ALRKPVFTKVNELRPGTNGHSLNVKVVNTKMV-MQRGGGRPMGPQSRQM---RIAECLVG 66

Query: 70  DETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA-EPADFEVK 129
           DETG I+FTARNDQVD+MK G+ VTLRNAKIDM+KGSMRLAVD+WGR+EVA EP D  VK
Sbjct: 67  DETGIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVK 126

Query: 130 EDNNLSLVEYELVNVE 145
           +DNNLSL+EYELV+VE
Sbjct: 127 DDNNLSLIEYELVSVE 138

[Close]

BLAST of Carg18050 vs. TAIR 10
Match: AT1G10590.3 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 175.6 bits (444), Expect = 2.8e-44
Identity = 92/136 (67.65%), Postives = 111/136 (81.62%), Query Frame = 0


Query: 10  AKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVG 69
           A RKPVF KV +L+PG++GH+L VKVV++K V +   GGR   P +R     RI+ECLVG
Sbjct: 21  ALRKPVFTKVNELRPGTNGHSLNVKVVNTKMV-MQRGGGRPMGPQSRQM---RIAECLVG 80

Query: 70  DETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA-EPADFEVK 129
           DETG I+FTARNDQVD+MK G+ VTLRNAKIDM+KGSMRLAVD+WGR+EVA EP D  VK
Sbjct: 81  DETGIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVK 140

Query: 130 EDNNLSLVEYELVNVE 145
           +DNNLSL+EYELV+VE
Sbjct: 141 DDNNLSLIEYELVSVE 152

The following BLAST results are available for this feature:

BLAST of Carg18050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022988994.1	4.6e-73	100.00	uncharacterized protein At4g28440-like [Cucurbita maxima] >XP_023529810.1 unchar...	[more]
KAG6589134.1	1.3e-72	99.31	hypothetical protein SDJN03_17699, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022930657.1	3.9e-72	99.31	uncharacterized protein At4g28440-like [Cucurbita moschata]	[more]
XP_038887250.1	1.4e-69	94.48	uncharacterized protein At4g28440-like [Benincasa hispida]	[more]
XP_008455497.1	4.1e-69	93.79	PREDICTED: uncharacterized protein At4g28440 [Cucumis melo] >KAA0059117.1 unchar...	[more]

BLAST of Carg18050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49453	1.0e-46	69.92	Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 P...	[more]
Q97W73	6.2e-04	27.35	Single-stranded DNA binding protein Ssb OS=Saccharolobus solfataricus (strain AT...	[more]

BLAST of Carg18050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JN47	2.2e-73	100.00	uncharacterized protein At4g28440-like OS=Cucurbita maxima OX=3661 GN=LOC1114861...	[more]
A0A6J1ER67	1.9e-72	99.31	uncharacterized protein At4g28440-like OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
A0A5A7UWS4	2.0e-69	93.79	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C119	2.0e-69	93.79	uncharacterized protein At4g28440 OS=Cucumis melo OX=3656 GN=LOC103495649 PE=4 S...	[more]
A0A0A0K1C6	3.3e-69	93.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G038160 PE=4 SV=1	[more]

BLAST of Carg18050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28440.1	7.2e-48	69.92	Nucleic acid-binding, OB-fold-like protein	[more]
AT2G33845.1	9.4e-48	73.33	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G23750.1	8.8e-46	69.40	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G10590.1	2.8e-44	67.65	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G10590.3	2.8e-44	67.65	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 26..135 e-value: 1.9E-43 score: 148.9
None	No IPR available	PANTHER	PTHR31472:SF13	EXPRESSED PROTEIN	coord: 6..144
None	No IPR available	PANTHER	PTHR31472	OS05G0244600 PROTEIN	coord: 6..144
None	No IPR available	CDD	cd04491	SoSSB_OBF	coord: 61..119 e-value: 2.07995E-17 score: 69.9593
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 7..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18050-RA	Carg18050-RA	mRNA