Carg18040 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18040
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	translation initiation factor IF-2 isoform X1
Location	Carg_Chr11: 12014175 .. 12014816 (+)
RNA-Seq Expression	Carg18040
Synteny	Carg18040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAAACCAACAAATACACCTCCATCAATTTCAATCACATCTACGACAAGAATCTCTCCTCCAATTCCAAAACTGGCACTAATCTCTCCAAAAACCCCTCTTCTTCTTCTTCTTCTTCTTCTTCATCTTTTGCTAGCAAGTCCCATGGCCGCATGCTCGTCCTGACCCGTCCTACCCCCAAACCCATCACCTTGCCTCCGGTTCTTTGCCCCCAGCCGCAATCTCGACCCTCATCTGCCGATCATCGTGAGCTTCCGGATCGACCCCGTTCGCAATCTGGTTCTGATTCCATCTCTCTTCGCCCTCTCGGGCGGACTGGTACAGGCGCGATCGCTCCGTCTCCGATTCCGAGCTTGGAGAAGGAGAAGGAGATTCCTCCTCCTCCGGCGGTGACGTTGCATAAACCGGAGAAATTTGTGCCGCCACATCTTAGGGCGGGTTTCGTCGGGAAGGAGGAGAGACCTGTGAACGTTGGGATCCGACCTAGAGAGGTGAATCAGAGGCAGTATGGGAATTACGGGTCTCCAAATCGGTGTGCTGAAGATGGGAGGCCGAAATCCGGCGGTGGGTATGAAAGGATGAGAGGGACGGTGGTGAATCGGCCACGTTCCAGCGGGAATCGCCCGAGTTCTAGTTGA

mRNA sequence

ATGGCAAAAACCAACAAATACACCTCCATCAATTTCAATCACATCTACGACAAGAATCTCTCCTCCAATTCCAAAACTGGCACTAATCTCTCCAAAAACCCCTCTTCTTCTTCTTCTTCTTCTTCTTCATCTTTTGCTAGCAAGTCCCATGGCCGCATGCTCGTCCTGACCCGTCCTACCCCCAAACCCATCACCTTGCCTCCGGTTCTTTGCCCCCAGCCGCAATCTCGACCCTCATCTGCCGATCATCGTGAGCTTCCGGATCGACCCCGTTCGCAATCTGGTTCTGATTCCATCTCTCTTCGCCCTCTCGGGCGGACTGGTACAGGCGCGATCGCTCCGTCTCCGATTCCGAGCTTGGAGAAGGAGAAGGAGATTCCTCCTCCTCCGGCGGTGACGTTGCATAAACCGGAGAAATTTGTGCCGCCACATCTTAGGGCGGGTTTCGTCGGGAAGGAGGAGAGACCTGTGAACGTTGGGATCCGACCTAGAGAGGTGAATCAGAGGCAGTATGGGAATTACGGGTCTCCAAATCGGTGTGCTGAAGATGGGAGGCCGAAATCCGGCGGTGGGTATGAAAGGATGAGAGGGACGGTGGTGAATCGGCCACGTTCCAGCGGGAATCGCCCGAGTTCTAGTTGA

Coding sequence (CDS)

ATGGCAAAAACCAACAAATACACCTCCATCAATTTCAATCACATCTACGACAAGAATCTCTCCTCCAATTCCAAAACTGGCACTAATCTCTCCAAAAACCCCTCTTCTTCTTCTTCTTCTTCTTCTTCATCTTTTGCTAGCAAGTCCCATGGCCGCATGCTCGTCCTGACCCGTCCTACCCCCAAACCCATCACCTTGCCTCCGGTTCTTTGCCCCCAGCCGCAATCTCGACCCTCATCTGCCGATCATCGTGAGCTTCCGGATCGACCCCGTTCGCAATCTGGTTCTGATTCCATCTCTCTTCGCCCTCTCGGGCGGACTGGTACAGGCGCGATCGCTCCGTCTCCGATTCCGAGCTTGGAGAAGGAGAAGGAGATTCCTCCTCCTCCGGCGGTGACGTTGCATAAACCGGAGAAATTTGTGCCGCCACATCTTAGGGCGGGTTTCGTCGGGAAGGAGGAGAGACCTGTGAACGTTGGGATCCGACCTAGAGAGGTGAATCAGAGGCAGTATGGGAATTACGGGTCTCCAAATCGGTGTGCTGAAGATGGGAGGCCGAAATCCGGCGGTGGGTATGAAAGGATGAGAGGGACGGTGGTGAATCGGCCACGTTCCAGCGGGAATCGCCCGAGTTCTAGTTGA

Protein sequence

MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSSSFASKSHGRMLVLTRPTPKPITLPPVLCPQPQSRPSSADHRELPDRPRSQSGSDSISLRPLGRTGTGAIAPSPIPSLEKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRCAEDGRPKSGGGYERMRGTVVNRPRSSGNRPSSS

Homology

[Close]

BLAST of Carg18040 vs. NCBI nr
Match: KAG7022842.1 (hypothetical protein SDJN02_16578, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 407.9 bits (1047), Expect = 5.3e-110
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSSSFASKSHGRMLVLTRPT 60
           MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSSSFASKSHGRMLVLTRPT
Sbjct: 1   MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSSSFASKSHGRMLVLTRPT 60

Query: 61  PKPITLPPVLCPQPQSRPSSADHRELPDRPRSQSGSDSISLRPLGRTGTGAIAPSPIPSL 120
           PKPITLPPVLCPQPQSRPSSADHRELPDRPRSQSGSDSISLRPLGRTGTGAIAPSPIPSL
Sbjct: 61  PKPITLPPVLCPQPQSRPSSADHRELPDRPRSQSGSDSISLRPLGRTGTGAIAPSPIPSL 120

Query: 121 EKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRC 180
           EKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRC
Sbjct: 121 EKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRC 180

Query: 181 AEDGRPKSGGGYERMRGTVVNRPRSSGNRPSSS 214
           AEDGRPKSGGGYERMRGTVVNRPRSSGNRPSSS
Sbjct: 181 AEDGRPKSGGGYERMRGTVVNRPRSSGNRPSSS 213

[Close]

BLAST of Carg18040 vs. NCBI nr
Match: KAG6589142.1 (hypothetical protein SDJN03_17707, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 396.0 bits (1016), Expect = 2.1e-106
Identity = 210/213 (98.59%), Postives = 210/213 (98.59%), Query Frame = 0


Query: 1   MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSSSFASKSHGRMLVLTRPT 60
           MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNP SSSSSSSSSFASKSHGRMLVLTRPT
Sbjct: 1   MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNP-SSSSSSSSSFASKSHGRMLVLTRPT 60

Query: 61  PKPITLPPVLCPQPQSRPSSADHRELPDRPRSQSGSDSISLRPLGRTGTGAIAPSPIPSL 120
           PKPITLPPVLCPQPQSRPSSADHRELPDRPRSQSGSDSISLRPLGRTGTGAIAPSPIPSL
Sbjct: 61  PKPITLPPVLCPQPQSRPSSADHRELPDRPRSQSGSDSISLRPLGRTGTGAIAPSPIPSL 120

Query: 121 EKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRC 180
           EKEKEIPPPPAV LHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNR 
Sbjct: 121 EKEKEIPPPPAVMLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRY 180

Query: 181 AEDGRPKSGGGYERMRGTVVNRPRSSGNRPSSS 214
           AEDGRPKSGGGYERMRGTVVNRPRSSGNRPSSS
Sbjct: 181 AEDGRPKSGGGYERMRGTVVNRPRSSGNRPSSS 212

[Close]

BLAST of Carg18040 vs. NCBI nr
Match: XP_022930822.1 (uncharacterized protein LOC111437190 [Cucurbita moschata])

HSP 1 Score: 392.5 bits (1007), Expect = 2.3e-105
Identity = 209/213 (98.12%), Postives = 209/213 (98.12%), Query Frame = 0


Query: 1   MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSSSFASKSHGRMLVLTRPT 60
           MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNP SSSSSSSSSFASKSHGRMLVLTRPT
Sbjct: 1   MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNP-SSSSSSSSSFASKSHGRMLVLTRPT 60

Query: 61  PKPITLPPVLCPQPQSRPSSADHRELPDRPRSQSGSDSISLRPLGRTGTGAIAPSPIPSL 120
           PKPITLPPVL PQPQSRPSSADHRELPDRPRSQ GSDSISLRPLGRTGTGAIAPSPIPSL
Sbjct: 61  PKPITLPPVLSPQPQSRPSSADHRELPDRPRSQPGSDSISLRPLGRTGTGAIAPSPIPSL 120

Query: 121 EKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRC 180
           EKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNR 
Sbjct: 121 EKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRY 180

Query: 181 AEDGRPKSGGGYERMRGTVVNRPRSSGNRPSSS 214
           AEDGRPKSGGGYERMRGTVVNRPRSSGNRPSSS
Sbjct: 181 AEDGRPKSGGGYERMRGTVVNRPRSSGNRPSSS 212

[Close]

BLAST of Carg18040 vs. NCBI nr
Match: XP_022988942.1 (uncharacterized protein LOC111486146 [Cucurbita maxima])

HSP 1 Score: 384.8 bits (987), Expect = 4.8e-103
Identity = 208/220 (94.55%), Postives = 209/220 (95.00%), Query Frame = 0


Query: 1   MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSSSFASKSHGRMLVLTRPT 60
           MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSSSFASKSHGRMLVLTRPT
Sbjct: 1   MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSSSFASKSHGRMLVLTRPT 60

Query: 61  PKPITLPPVLCPQPQSRPSSADHRELPDRPRSQSGSDSISLRPLGRTGTGAIAPSPIPSL 120
           PKPITLPPVL PQPQSRPSSADHREL DRPRSQSGSDSISLRPL +TGTGAIAPSPIPSL
Sbjct: 61  PKPITLPPVLSPQPQSRPSSADHRELRDRPRSQSGSDSISLRPLEQTGTGAIAPSPIPSL 120

Query: 121 EKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRC 180
           EKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNR 
Sbjct: 121 EKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRY 180

Query: 181 AEDGRPKSGGGYERMR-------GTVVNRPRSSGNRPSSS 214
           AEDGRPKSGGGYERMR       GTVVNRPRSSGNRPSSS
Sbjct: 181 AEDGRPKSGGGYERMRGAGEARLGTVVNRPRSSGNRPSSS 220

[Close]

BLAST of Carg18040 vs. NCBI nr
Match: XP_023531071.1 (uncharacterized protein LOC111793433 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 369.4 bits (947), Expect = 2.1e-98
Identity = 203/222 (91.44%), Postives = 203/222 (91.44%), Query Frame = 0


Query: 1   MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSSSFASKSHGRMLVLTRPT 60
           MAKTNKYTSINFNHIYDKNLSSNSKTGTN SKNP     SSSSS ASKSHGRMLVLTRPT
Sbjct: 1   MAKTNKYTSINFNHIYDKNLSSNSKTGTNPSKNP-----SSSSSLASKSHGRMLVLTRPT 60

Query: 61  PKPITLPPVLCPQPQSRPSSADHRELPDRPRSQ--SGSDSISLRPLGRTGTGAIAPSPIP 120
           PKPITLPPVL PQPQSRPSSADHRELPDRPRSQ  SGSDSISLRPLGRTGTGAIAPSPIP
Sbjct: 61  PKPITLPPVLPPQPQSRPSSADHRELPDRPRSQSGSGSDSISLRPLGRTGTGAIAPSPIP 120

Query: 121 SLEKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPN 180
           SLEKEKEIPPPPAV LHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPN
Sbjct: 121 SLEKEKEIPPPPAVALHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPN 180

Query: 181 RCAEDGRPKSGGGYERMR-------GTVVNRPRSSGNRPSSS 214
           R AEDGRPKSGGGYERMR       GTVVNRPRSSGNRPSSS
Sbjct: 181 RYAEDGRPKSGGGYERMRGAGEARLGTVVNRPRSSGNRPSSS 217

[Close]

BLAST of Carg18040 vs. ExPASy TrEMBL
Match: A0A6J1ERQ4 (uncharacterized protein LOC111437190 OS=Cucurbita moschata OX=3662 GN=LOC111437190 PE=4 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 1.1e-105
Identity = 209/213 (98.12%), Postives = 209/213 (98.12%), Query Frame = 0


Query: 1   MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSSSFASKSHGRMLVLTRPT 60
           MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNP SSSSSSSSSFASKSHGRMLVLTRPT
Sbjct: 1   MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNP-SSSSSSSSSFASKSHGRMLVLTRPT 60

Query: 61  PKPITLPPVLCPQPQSRPSSADHRELPDRPRSQSGSDSISLRPLGRTGTGAIAPSPIPSL 120
           PKPITLPPVL PQPQSRPSSADHRELPDRPRSQ GSDSISLRPLGRTGTGAIAPSPIPSL
Sbjct: 61  PKPITLPPVLSPQPQSRPSSADHRELPDRPRSQPGSDSISLRPLGRTGTGAIAPSPIPSL 120

Query: 121 EKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRC 180
           EKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNR 
Sbjct: 121 EKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRY 180

Query: 181 AEDGRPKSGGGYERMRGTVVNRPRSSGNRPSSS 214
           AEDGRPKSGGGYERMRGTVVNRPRSSGNRPSSS
Sbjct: 181 AEDGRPKSGGGYERMRGTVVNRPRSSGNRPSSS 212

[Close]

BLAST of Carg18040 vs. ExPASy TrEMBL
Match: A0A6J1JEE6 (uncharacterized protein LOC111486146 OS=Cucurbita maxima OX=3661 GN=LOC111486146 PE=4 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 2.3e-103
Identity = 208/220 (94.55%), Postives = 209/220 (95.00%), Query Frame = 0


Query: 1   MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSSSFASKSHGRMLVLTRPT 60
           MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSSSFASKSHGRMLVLTRPT
Sbjct: 1   MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSSSFASKSHGRMLVLTRPT 60

Query: 61  PKPITLPPVLCPQPQSRPSSADHRELPDRPRSQSGSDSISLRPLGRTGTGAIAPSPIPSL 120
           PKPITLPPVL PQPQSRPSSADHREL DRPRSQSGSDSISLRPL +TGTGAIAPSPIPSL
Sbjct: 61  PKPITLPPVLSPQPQSRPSSADHRELRDRPRSQSGSDSISLRPLEQTGTGAIAPSPIPSL 120

Query: 121 EKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRC 180
           EKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNR 
Sbjct: 121 EKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRY 180

Query: 181 AEDGRPKSGGGYERMR-------GTVVNRPRSSGNRPSSS 214
           AEDGRPKSGGGYERMR       GTVVNRPRSSGNRPSSS
Sbjct: 181 AEDGRPKSGGGYERMRGAGEARLGTVVNRPRSSGNRPSSS 220

[Close]

BLAST of Carg18040 vs. ExPASy TrEMBL
Match: A0A1S3C160 (translation initiation factor IF-2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495638 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 4.6e-83
Identity = 183/229 (79.91%), Postives = 190/229 (82.97%), Query Frame = 0


Query: 1   MAKTNKYTSINFNHIYDKNLSSNSKTGTNLS--KNPSSSSSS-------SSSSFASKSHG 60
           MAKTNKYTSINFNHIYDKNLSSNSKTG N S  KNPSSSSSS       SS S  +KSHG
Sbjct: 1   MAKTNKYTSINFNHIYDKNLSSNSKTGNNPSSNKNPSSSSSSSFATATYSSISSPNKSHG 60

Query: 61  RMLVLTRPTPKPITLPPVLCPQPQSRPSSADHRELPDRPRSQSGSDSISLRPLGRTGTGA 120
           RMLVLTRPTPKPIT P VL PQPQSRPSSADHR +PD+PR QS SDSISLRPLGRTGTGA
Sbjct: 61  RMLVLTRPTPKPITSPQVLSPQPQSRPSSADHRPVPDQPRPQSDSDSISLRPLGRTGTGA 120

Query: 121 IAPSPIPSLEKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQY 180
           IAPSPI  LEK +EI  PP VTLHKPEKFVPPHLRAGFVGKEERPVNVGIR RE NQRQY
Sbjct: 121 IAPSPITGLEKNREI-TPPVVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRSREGNQRQY 180

Query: 181 GNYGSPNRCAEDGRPKSGGGYERMR-------GTVVNRPRSSGNRPSSS 214
           GNYGS +R  EDGRPKSGGGYERM+       G +VNRPRSSGNRPSSS
Sbjct: 181 GNYGSSSRYGEDGRPKSGGGYERMKGVGEADLGAMVNRPRSSGNRPSSS 228

[Close]

BLAST of Carg18040 vs. ExPASy TrEMBL
Match: A0A0A0K3D7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G039270 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 1.0e-82
Identity = 182/229 (79.48%), Postives = 189/229 (82.53%), Query Frame = 0


Query: 1   MAKTNKYTSINFNHIYDKNLSSNSKTGTNLS--KNPSSSSSS-------SSSSFASKSHG 60
           MAKTNKYTSINFNHIYDKNLSSNSKTG N S  KNPSSSSSS       SS S  +KSHG
Sbjct: 1   MAKTNKYTSINFNHIYDKNLSSNSKTGNNPSSNKNPSSSSSSSFATATYSSISSPNKSHG 60

Query: 61  RMLVLTRPTPKPITLPPVLCPQPQSRPSSADHRELPDRPRSQSGSDSISLRPLGRTGTGA 120
           RMLVLTRPTP+PIT P  L PQPQSRPSSADHR +PD PR QS SDSISLRPLGRTGTGA
Sbjct: 61  RMLVLTRPTPRPITSPQPLSPQPQSRPSSADHRPVPDHPRPQSDSDSISLRPLGRTGTGA 120

Query: 121 IAPSPIPSLEKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQY 180
           IAPSPIP LEK++EI  PP VTLHKPEKFVPPHLRAGFVGKEERPVNVGIR RE NQRQY
Sbjct: 121 IAPSPIPVLEKDREI-TPPVVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRSREGNQRQY 180

Query: 181 GNYGSPNRCAEDGRPKSGGGYERMR-------GTVVNRPRSSGNRPSSS 214
           GNYGS  R  EDGRPKSGGGYERM+       G +VNRPRSSGNRPSSS
Sbjct: 181 GNYGSSGRYGEDGRPKSGGGYERMKEVGEADLGAMVNRPRSSGNRPSSS 228

[Close]

BLAST of Carg18040 vs. ExPASy TrEMBL
Match: A0A6J1GJZ3 (uncharacterized protein LOC111455051 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455051 PE=4 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 2.5e-81
Identity = 177/229 (77.29%), Postives = 189/229 (82.53%), Query Frame = 0


Query: 1   MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSS---------SFASKSHG 60
           MAKTNKYTSIN+NHIYDK+LS NSKTG N SKNPSSSSSSSSS         S A+KSHG
Sbjct: 1   MAKTNKYTSINYNHIYDKDLSPNSKTGNNPSKNPSSSSSSSSSFASATYSSISSANKSHG 60

Query: 61  RMLVLTRPTPKPITLPPVLCPQPQSRPSSADHRELPDRPRSQSGSDSISLRPLGRTGTGA 120
           RMLVLTRPTPKPI+ PPVL PQPQSR  SAD R + D+ R Q  SDSISLRPLGRTGTGA
Sbjct: 61  RMLVLTRPTPKPISSPPVLSPQPQSRSPSADPRPVADQTRPQCESDSISLRPLGRTGTGA 120

Query: 121 IAPSPIPSLEKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQY 180
           IAPSPIP+LEK+KEI PPP VTLHKPEKFVPPHLRAGFVGKEERPV+VGIR RE NQRQY
Sbjct: 121 IAPSPIPNLEKDKEI-PPPTVTLHKPEKFVPPHLRAGFVGKEERPVSVGIRSREANQRQY 180

Query: 181 GNYGSPNRCAEDGRPKSGGGYERM-------RGTVVNRPRSSGNRPSSS 214
           GNYGSP R  EDGRPKSGG YERM       +G +VNRPRSSGNRP+SS
Sbjct: 181 GNYGSPGRYGEDGRPKSGGAYERMNGAGEADQGAMVNRPRSSGNRPNSS 228

[Close]

BLAST of Carg18040 vs. TAIR 10
Match: AT3G54680.1 (proteophosphoglycan-related )

HSP 1 Score: 113.6 bits (283), Expect = 1.9e-25
Identity = 100/231 (43.29%), Postives = 127/231 (54.98%), Query Frame = 0


Query: 5   NKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSSSFAS--KSHGRMLVLTRPTPK 64
           NKYTSINFNHI  K+              PSSSSSSSS+S++S  +S+GRMLVLT+ +PK
Sbjct: 7   NKYTSINFNHILHKD-------------PPSSSSSSSSASYSSVARSNGRMLVLTKSSPK 66

Query: 65  PITLPPVLCPQPQSRPSSADHRELPDRPRSQSGSD----SISLRPLGRTGTGAIAPSPI- 124
           P+  P      P +  ++      P  P +Q+ SD     ISLRPLG TG+ +    PI 
Sbjct: 67  PLRSPSA---APTTTTTAPPISTAPRIPSNQAISDPDPSQISLRPLGHTGSSSSLSFPIR 126

Query: 125 -PSLEKEKEIPPPPAVTLH-KPEKFVPPHLRAGFVGKEERP---------VNVGIRPREV 184
            P + K  E+  P  V+L  KP++FVPPHLR GFV K+E+P          N  +  R  
Sbjct: 127 TPEINKAPEVNAPTPVSLSPKPDRFVPPHLRPGFVRKDEKPGLNSSRVRDPNPNLNQRLP 186

Query: 185 NQRQ----YGNYGSPNRCAEDGRPKSGGGYERMRGTVVNRPRSSGNRPSSS 214
           NQ Q    Y  YG P      GRPKS GGYER+R      PR +GNRP +S
Sbjct: 187 NQEQPRQEYFGYGQP------GRPKS-GGYERIR----TDPRITGNRPGTS 210

The following BLAST results are available for this feature:

BLAST of Carg18040 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022842.1	5.3e-110	100.00	hypothetical protein SDJN02_16578, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6589142.1	2.1e-106	98.59	hypothetical protein SDJN03_17707, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022930822.1	2.3e-105	98.12	uncharacterized protein LOC111437190 [Cucurbita moschata]	[more]
XP_022988942.1	4.8e-103	94.55	uncharacterized protein LOC111486146 [Cucurbita maxima]	[more]
XP_023531071.1	2.1e-98	91.44	uncharacterized protein LOC111793433 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg18040 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg18040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ERQ4	1.1e-105	98.12	uncharacterized protein LOC111437190 OS=Cucurbita moschata OX=3662 GN=LOC1114371...	[more]
A0A6J1JEE6	2.3e-103	94.55	uncharacterized protein LOC111486146 OS=Cucurbita maxima OX=3661 GN=LOC111486146...	[more]
A0A1S3C160	4.6e-83	79.91	translation initiation factor IF-2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A0A0K3D7	1.0e-82	79.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G039270 PE=4 SV=1	[more]
A0A6J1GJZ3	2.5e-81	77.29	uncharacterized protein LOC111455051 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Carg18040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54680.1	1.9e-25	43.29	proteophosphoglycan-related	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..136
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..213
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18040-RA	Carg18040-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
molecular_function	GO:0003743	translation initiation factor activity