Carg18028 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18028
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	inactive protein RESTRICTED TEV MOVEMENT 2-like
Location	Carg_Chr11: 3739210 .. 3740906 (+)
RNA-Seq Expression	Carg18028
Synteny	Carg18028

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCGAAAAATTACCAGGATTTTTCGCCTAGATGTGATTGGCGTGAGGATCATGATTCTCGTGTTCTTACCGTACCCCTTAAAGGTTTGCTAATTCATCTCGCCTCCTCCTTCTTCGTTCTTTGCAATTCAGCAATTCGAAAACCGCACTCTAAAATTATTTTAAATAAAATTTTGAAAATTTATTTATATCCTTCAAATTTGACATTTAAATTTTTGTTGTAATCTCAATAAATTTTAAAATTTAAATTTAGTCATGAAATTATTATTATTTTTATACAAATTAGTAATAAAATTATTTTTTACATGTATTTTCAAATAAAAGATCTTATGAATGATTTTTTTCTCAACAATAAACTAACCATATAAATTAATATTAGGCCAATTTTAATGAAAATACAAAGGATAATTTTTATACTATAAATTTCAAAAACTAGAATAAGATTAAAATATAGGAGCTAAAATTAAAAAAAAAAAAAAAAAAAAACTATTTTTTAAAGACAAATCTTACTTTAAAATGAGTTATTATTTTATTAACATATTTAGACATATAAATATAAACACATAAATGAGAATAAAACAGAGAAAATAATAATAAATGAGAATAATAAATAAATAAATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTTTGAAGTTGCAGAGCTTTCTCCTTCTTCATCGAGTTTTGTTGTTCTACAGATTTTAGGAGCAGCCAACTGAAAGTCCAGGTGACATCCACCGGAAAGTTGAGGGTCTCCGGCGAACGGATGACCGAAGGCAACAAGTGGCTCCGATTCTACAAGGAGCTAGATGTCCCCACCGATACTGACACCGACAACATCTCTGCCAAGTTCAAGGATGGCGTCCTCTTCGTCAAACACCCCAAAAAACTATCTGCCGCTACTTTCCCCAAAGCCGATCCCCGACCACCGGCCGAGCCTCCGAAGCCAGCGGCCGGGAAACCCAAAGTCGATCCCCAACCACCGGCCGAGCCTCCGAAGCCGGGGGCCGGGAAACCCAAAGCTGATCCCCGACCACCGGCCGAGCCTCCGAAGCCAGCGGCCGCAAAATCCTCAATCGACCCACCAACTGATCCACAAAATGCCCCAAAGAGCCGAAATGAGGAACGCCAATCACAATCAAGTAGCAAAAGAGCCCCCACTTCCCCAAGGATACAAGGTATAGACAAAGAATTAGAGGATCAGCAGAATCTCACACCCGGCCCACAAACTGTCCCACAGAGACAAAATGAGGAGCCTCAAGAACAGGCACATGGGGAACGAAGCCCCCCTCCCCAAAAGGAAAAAACAGAGGAGGAGAAGGCAAAAGCACACACAAATCTGAAGGAAGCTTCGAAGGAGACAAGAGATGAGGAAAGGGGGAAAGAAGAAATTGGGTCGAAAATGGGAGAGGGCAAAGGGAAGGAGGAGGAGGGCAGCCATGGAAGGGAAGAGAAGGAAGGTGAAGTTGCAGAGGAGAGGAGGAGGAGGAGGAGGAGTGAGGGAACGGTGGAAGAGAGTTTCCTGTGGAGAAGAGAAGGGTACAAACAGGTTATTGATGGGGTGGTGAAGGAATTGAGGACAACTATGGTGACTTTGGTTTTGGGGATTGCTGTTCTTGTGATTCTGTATCTGAAAGTTACAAACAAAGGTCATGTGGATGAAGAATTGTGA

mRNA sequence

ATGGATTCGAAAAATTACCAGGATTTTTCGCCTAGATGTGATTGGCGTGAGGATCATGATTCTCGTGTTCTTACCGTACCCCTTAAAGATTTTAGGAGCAGCCAACTGAAAGTCCAGGTGACATCCACCGGAAAGTTGAGGGTCTCCGGCGAACGGATGACCGAAGGCAACAAGTGGCTCCGATTCTACAAGGAGCTAGATGTCCCCACCGATACTGACACCGACAACATCTCTGCCAAGTTCAAGGATGGCGTCCTCTTCGTCAAACACCCCAAAAAACTATCTGCCGCTACTTTCCCCAAAGCCGATCCCCGACCACCGGCCGAGCCTCCGAAGCCAGCGGCCGGGAAACCCAAAGTCGATCCCCAACCACCGGCCGAGCCTCCGAAGCCGGGGGCCGGGAAACCCAAAGCTGATCCCCGACCACCGGCCGAGCCTCCGAAGCCAGCGGCCGCAAAATCCTCAATCGACCCACCAACTGATCCACAAAATGCCCCAAAGAGCCGAAATGAGGAACGCCAATCACAATCAAGTAGCAAAAGAGCCCCCACTTCCCCAAGGATACAAGGTATAGACAAAGAATTAGAGGATCAGCAGAATCTCACACCCGGCCCACAAACTGTCCCACAGAGACAAAATGAGGAGCCTCAAGAACAGGCACATGGGGAACGAAGCCCCCCTCCCCAAAAGGAAAAAACAGAGGAGGAGAAGGCAAAAGCACACACAAATCTGAAGGAAGCTTCGAAGGAGACAAGAGATGAGGAAAGGGGGAAAGAAGAAATTGGGTCGAAAATGGGAGAGGGCAAAGGGAAGGAGGAGGAGGGCAGCCATGGAAGGGAAGAGAAGGAAGGTGAAGTTGCAGAGGAGAGGAGGAGGAGGAGGAGGAGTGAGGGAACGGTGGAAGAGAGTTTCCTGTGGAGAAGAGAAGGGTACAAACAGGTTATTGATGGGGTGGTGAAGGAATTGAGGACAACTATGGTGACTTTGGTTTTGGGGATTGCTGTTCTTGTGATTCTGTATCTGAAAGTTACAAACAAAGGTCATGTGGATGAAGAATTGTGA

Coding sequence (CDS)

ATGGATTCGAAAAATTACCAGGATTTTTCGCCTAGATGTGATTGGCGTGAGGATCATGATTCTCGTGTTCTTACCGTACCCCTTAAAGATTTTAGGAGCAGCCAACTGAAAGTCCAGGTGACATCCACCGGAAAGTTGAGGGTCTCCGGCGAACGGATGACCGAAGGCAACAAGTGGCTCCGATTCTACAAGGAGCTAGATGTCCCCACCGATACTGACACCGACAACATCTCTGCCAAGTTCAAGGATGGCGTCCTCTTCGTCAAACACCCCAAAAAACTATCTGCCGCTACTTTCCCCAAAGCCGATCCCCGACCACCGGCCGAGCCTCCGAAGCCAGCGGCCGGGAAACCCAAAGTCGATCCCCAACCACCGGCCGAGCCTCCGAAGCCGGGGGCCGGGAAACCCAAAGCTGATCCCCGACCACCGGCCGAGCCTCCGAAGCCAGCGGCCGCAAAATCCTCAATCGACCCACCAACTGATCCACAAAATGCCCCAAAGAGCCGAAATGAGGAACGCCAATCACAATCAAGTAGCAAAAGAGCCCCCACTTCCCCAAGGATACAAGGTATAGACAAAGAATTAGAGGATCAGCAGAATCTCACACCCGGCCCACAAACTGTCCCACAGAGACAAAATGAGGAGCCTCAAGAACAGGCACATGGGGAACGAAGCCCCCCTCCCCAAAAGGAAAAAACAGAGGAGGAGAAGGCAAAAGCACACACAAATCTGAAGGAAGCTTCGAAGGAGACAAGAGATGAGGAAAGGGGGAAAGAAGAAATTGGGTCGAAAATGGGAGAGGGCAAAGGGAAGGAGGAGGAGGGCAGCCATGGAAGGGAAGAGAAGGAAGGTGAAGTTGCAGAGGAGAGGAGGAGGAGGAGGAGGAGTGAGGGAACGGTGGAAGAGAGTTTCCTGTGGAGAAGAGAAGGGTACAAACAGGTTATTGATGGGGTGGTGAAGGAATTGAGGACAACTATGGTGACTTTGGTTTTGGGGATTGCTGTTCTTGTGATTCTGTATCTGAAAGTTACAAACAAAGGTCATGTGGATGAAGAATTGTGA

Protein sequence

MDSKNYQDFSPRCDWREDHDSRVLTVPLKDFRSSQLKVQVTSTGKLRVSGERMTEGNKWLRFYKELDVPTDTDTDNISAKFKDGVLFVKHPKKLSAATFPKADPRPPAEPPKPAAGKPKVDPQPPAEPPKPGAGKPKADPRPPAEPPKPAAAKSSIDPPTDPQNAPKSRNEERQSQSSSKRAPTSPRIQGIDKELEDQQNLTPGPQTVPQRQNEEPQEQAHGERSPPPQKEKTEEEKAKAHTNLKEASKETRDEERGKEEIGSKMGEGKGKEEEGSHGREEKEGEVAEERRRRRRSEGTVEESFLWRREGYKQVIDGVVKELRTTMVTLVLGIAVLVILYLKVTNKGHVDEEL

Homology

[Close]

BLAST of Carg18028 vs. NCBI nr
Match: XP_022933280.1 (inactive protein RESTRICTED TEV MOVEMENT 2-like [Cucurbita moschata] >KAG6588134.1 Inactive protein RESTRICTED TEV MOVEMENT 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022029.1 Inactive protein RESTRICTED TEV MOVEMENT 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 646.0 bits (1665), Expect = 1.9e-181
Identity = 353/353 (100.00%), Postives = 353/353 (100.00%), Query Frame = 0


Query: 1   MDSKNYQDFSPRCDWREDHDSRVLTVPLKDFRSSQLKVQVTSTGKLRVSGERMTEGNKWL 60
           MDSKNYQDFSPRCDWREDHDSRVLTVPLKDFRSSQLKVQVTSTGKLRVSGERMTEGNKWL
Sbjct: 1   MDSKNYQDFSPRCDWREDHDSRVLTVPLKDFRSSQLKVQVTSTGKLRVSGERMTEGNKWL 60

Query: 61  RFYKELDVPTDTDTDNISAKFKDGVLFVKHPKKLSAATFPKADPRPPAEPPKPAAGKPKV 120
           RFYKELDVPTDTDTDNISAKFKDGVLFVKHPKKLSAATFPKADPRPPAEPPKPAAGKPKV
Sbjct: 61  RFYKELDVPTDTDTDNISAKFKDGVLFVKHPKKLSAATFPKADPRPPAEPPKPAAGKPKV 120

Query: 121 DPQPPAEPPKPGAGKPKADPRPPAEPPKPAAAKSSIDPPTDPQNAPKSRNEERQSQSSSK 180
           DPQPPAEPPKPGAGKPKADPRPPAEPPKPAAAKSSIDPPTDPQNAPKSRNEERQSQSSSK
Sbjct: 121 DPQPPAEPPKPGAGKPKADPRPPAEPPKPAAAKSSIDPPTDPQNAPKSRNEERQSQSSSK 180

Query: 181 RAPTSPRIQGIDKELEDQQNLTPGPQTVPQRQNEEPQEQAHGERSPPPQKEKTEEEKAKA 240
           RAPTSPRIQGIDKELEDQQNLTPGPQTVPQRQNEEPQEQAHGERSPPPQKEKTEEEKAKA
Sbjct: 181 RAPTSPRIQGIDKELEDQQNLTPGPQTVPQRQNEEPQEQAHGERSPPPQKEKTEEEKAKA 240

Query: 241 HTNLKEASKETRDEERGKEEIGSKMGEGKGKEEEGSHGREEKEGEVAEERRRRRRSEGTV 300
           HTNLKEASKETRDEERGKEEIGSKMGEGKGKEEEGSHGREEKEGEVAEERRRRRRSEGTV
Sbjct: 241 HTNLKEASKETRDEERGKEEIGSKMGEGKGKEEEGSHGREEKEGEVAEERRRRRRSEGTV 300

Query: 301 EESFLWRREGYKQVIDGVVKELRTTMVTLVLGIAVLVILYLKVTNKGHVDEEL 354
           EESFLWRREGYKQVIDGVVKELRTTMVTLVLGIAVLVILYLKVTNKGHVDEEL
Sbjct: 301 EESFLWRREGYKQVIDGVVKELRTTMVTLVLGIAVLVILYLKVTNKGHVDEEL 353

[Close]

BLAST of Carg18028 vs. NCBI nr
Match: XP_022967447.1 (extensin-like [Cucurbita maxima])

HSP 1 Score: 495.0 bits (1273), Expect = 5.5e-136
Identity = 304/431 (70.53%), Postives = 317/431 (73.55%), Query Frame = 0


Query: 3   SKNYQDFSPRCDWREDHDSRVLTVPLKDFRSSQLKVQVTSTGKLRVSGERMTEGNKWLRF 62
           SKNY+DFSP   W EDH+SRVLTVPLKDFRSSQLKVQVTSTGKLR  GERM EGNKWLRF
Sbjct: 4   SKNYRDFSPTFVWHEDHNSRVLTVPLKDFRSSQLKVQVTSTGKLRAFGERMIEGNKWLRF 63

Query: 63  YKELDVPTDTDTDNISAKFKDGVLFVKHPKKLSAATF----------------------- 122
           YKELDVPTDTDTD ISAKF+DGVL+VKHPKKLSAA                         
Sbjct: 64  YKELDVPTDTDTDKISAKFEDGVLYVKHPKKLSAAASTNLPEKPTSMPKPKPESRPPPAA 123

Query: 123 --------------------------------------PKADPRPPAEPPKPAAGKPKVD 182
                                                 PKADPRPPAEPPKPAAGKPK D
Sbjct: 124 GKPKTDPQPPAEPPKPAAWKPKADPRPPAEPPKPAAGKPKADPRPPAEPPKPAAGKPKAD 183

Query: 183 PQPPAEPPKPGAGKPKADPRPPAEPPKPAAAKSSIDP------------------PTDPQ 242
           P+PPAEPPKP AGKPKADPRPPAEPPKPAA K   DP                  PT PQ
Sbjct: 184 PRPPAEPPKPAAGKPKADPRPPAEPPKPAAGKPKADPQPPAEPPKPAAEKSTVHLPTVPQ 243

Query: 243 NAPKSRNEERQSQSSSKRAPTSPRIQGIDKELEDQQNLTPGPQTVPQRQNEEPQEQAHGE 302
           NAP SRNE+RQSQSSSK APTSP    + KELEDQQNL  GPQTVPQRQNEEPQEQAHG+
Sbjct: 244 NAPNSRNEKRQSQSSSKEAPTSPGTTDLKKELEDQQNLLVGPQTVPQRQNEEPQEQAHGK 303

Query: 303 RSPPPQKEKTEEEKAKAHTNLKEASKETRDEERGKEEIGSKMGEGKGKEEEGSHGREEKE 354
           ++P PQKEKTEEEKAKAHTNLKEA ++TRDEERGKE IGSKMGEGKG  E+GSHGREEKE
Sbjct: 304 QTPSPQKEKTEEEKAKAHTNLKEAMEKTRDEERGKEVIGSKMGEGKGNGEKGSHGREEKE 363

[Close]

BLAST of Carg18028 vs. NCBI nr
Match: XP_023530362.1 (pollen-specific leucine-rich repeat extensin-like protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 427.6 bits (1098), Expect = 1.1e-115
Identity = 263/344 (76.45%), Postives = 273/344 (79.36%), Query Frame = 0


Query: 45  KLRVSGERMTEGNKWLRFYKELDVPTDTDTDNISAKFKDGVLFVKHPKKLSAATF----- 104
           KLRVSGERMTEGNKWLRFYKELDVPTD DTDNISAKFKDGVLFVKHPKKLSAAT      
Sbjct: 9   KLRVSGERMTEGNKWLRFYKELDVPTDIDTDNISAKFKDGVLFVKHPKKLSAATSTNLPE 68

Query: 105 -----------------------------PKADPRPPAEPPKPAAGKPKVDPQPPAEPPK 164
                                        P ADPR PAEPPKPAAGKP  DP+ PAEPPK
Sbjct: 69  KSTSKPKPKPKPKPEPGKPKADLQSPAGKPTADPRAPAEPPKPAAGKPTADPRAPAEPPK 128

Query: 165 PGAGKPKADPRPPAEPPKPAAAKSSIDPPTDPQNAPKSRNEERQSQSSSKRA-PTSPRIQ 224
           P AGKPKAD R PAEPPKP A  S+ D P   QN+PKS++++RQ QSSSK   P+SP IQ
Sbjct: 129 PAAGKPKADTRAPAEPPKPTAGNSTTDQPAVRQNSPKSQDQKRQLQSSSKLGPPSSPGIQ 188

Query: 225 GIDKELEDQQNLTPGPQTVPQRQNEEPQEQAHGERSPPPQKEKTEEEKAKAHTNLKEASK 284
            +DK LEDQQN TPGP TVPQRQNEEPQEQAHGER PPPQKEKT       HTNLKEA +
Sbjct: 189 DMDKALEDQQNRTPGPPTVPQRQNEEPQEQAHGERIPPPQKEKT-------HTNLKEALE 248

Query: 285 ETRDEERGKEEIGSKMGEGKGKEEEGSHGREEKEGEVAEERRRRRRSEGTVEESFLWRRE 344
           ETRDEERGKEEIGSKMGEGKGKEEEGSHGREEKEGEVAEE RRRRRSEGTVEESFLWRRE
Sbjct: 249 ETRDEERGKEEIGSKMGEGKGKEEEGSHGREEKEGEVAEE-RRRRRSEGTVEESFLWRRE 308

Query: 345 GYKQVIDGVVKELRTTMVTLVLGIAVLVILYLKVTNKGHVDEEL 354
           GYKQVIDGVVKELRTTMVTLVLGIAVLVILYLKVTNKGHVDEEL
Sbjct: 309 GYKQVIDGVVKELRTTMVTLVLGIAVLVILYLKVTNKGHVDEEL 344

[Close]

BLAST of Carg18028 vs. NCBI nr
Match: XP_038880225.1 (SH3 domain-containing protein C23A1.17-like [Benincasa hispida])

HSP 1 Score: 263.1 bits (671), Expect = 3.5e-66
Identity = 203/369 (55.01%), Postives = 241/369 (65.31%), Query Frame = 0


Query: 3   SKNYQDFSPRCDWREDHDSRVLTVPLKDFRSSQLKVQVTSTGKLRVSGERMTEGNKWLRF 62
           SK +Q+F PR DW    DS VL V L  FRS+QLKVQVTSTGKLRVSGER     KWLRF
Sbjct: 7   SKIFQEFDPRFDWVHQPDSHVLIVHLLGFRSNQLKVQVTSTGKLRVSGERRLGSGKWLRF 66

Query: 63  YKELDVPTDTDTDNISAKFKDGVLFVKHPKKLSAATFPKADPRPPAEPPKPAA--GKPKV 122
            KE+D+P D D D ISAK ++G+L+VK PKK SA +   +   P  + PKP A   +P  
Sbjct: 67  QKEIDIPADADADKISAKLEEGILYVKQPKKPSAVS---SINLPDQQQPKPTAESKRPPA 126

Query: 123 DPQPPAEPPKPGAGKPKAD-----PRPP------AEPPKPAAAKSSIDPPTDPQNAPKSR 182
             +P  EPPKP A KP  D     P  P      AEP KPAAAK ++DPPT   NAPK++
Sbjct: 127 VTKPKPEPPKPAAAKPTVDSPTVRPNAPKSQNEKAEPRKPAAAKPTVDPPTVRPNAPKTQ 186

Query: 183 NEERQSQSSSKRAPTSPRIQGIDKELEDQQNLTPGPQTVPQRQNEEP-QEQAHGERSPPP 242
           NE  QSQ+S K+ PT P+ Q    E       TP P   P   + +P Q+ A   R+   
Sbjct: 187 NERPQSQASGKQIPTPPKPQ----EAIAAPARTPKPAETPSMGSGQPVQDLALKNRT--- 246

Query: 243 QKEKTEEEKAKAHTNLKEASKETRDEERGKEEIGSKMGEGKGKEEEGSHGREEKEGEVAE 302
             EK  EEKAKAHT L++A ++TR+EE GKEE+GSKMGE  GKE  GS   EEKEG VAE
Sbjct: 247 --EKETEEKAKAHTTLQDALEKTREEE-GKEEVGSKMGE--GKEGGGSKMGEEKEGGVAE 306

Query: 303 ERRRR---RRSEGTVEESFLW-RREGYKQVIDGVVKELRTTMVTLVLGIAVLVILYLKVT 354
           ERRRR   RRSE  VEES  + RR+GYKQ+ID VVKELRT MVTLVLG+AV VI+YL +T
Sbjct: 307 ERRRRRRKRRSEEMVEESGRFRRRQGYKQIIDEVVKELRTNMVTLVLGVAVFVIVYLNLT 360

[Close]

BLAST of Carg18028 vs. NCBI nr
Match: KAA0055710.1 (inactive protein RESTRICTED TEV MOVEMENT 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 225.3 bits (573), Expect = 8.1e-55
Identity = 184/387 (47.55%), Postives = 222/387 (57.36%), Query Frame = 0


Query: 3   SKNYQDFSPRCDWREDHDSRVLTVPLKDFRSSQLKVQVTSTGKLRVSGERMTEGNKWLRF 62
           +KN+Q+F PR DW    DS VL V L  FRS+QLKVQVTSTGKLRVSGER     KWLRF
Sbjct: 7   AKNFQEFEPRYDWVHHPDSHVLVVRLSGFRSNQLKVQVTSTGKLRVSGERKLGNGKWLRF 66

Query: 63  YKELDVPTDTDTDNISAKFKDGVLFVKHPKKLSAATF---PKADPRP-PAEPPKPAAGKP 122
            KE+D+P D DTD ISAK ++G+L+VK PKKLSA +    P   P+P P   P PAA KP
Sbjct: 67  EKEIDIPADADTDKISAKLEEGILYVKQPKKLSATSSNIPPVQQPKPKPQSQPPPAATKP 126

Query: 123 KVDPQPPAEPPKPGAGKPKADPRPPAEPPKPAAAKSSIDPPTDPQNAPKSRNEERQSQSS 182
             DP P   P  P +   +      +EPPKPAA + ++ PPT    AP+S+NE       
Sbjct: 127 TADP-PTVRPSAPKSQNER------SEPPKPAATEPTVAPPTVGPKAPESQNERAD---- 186

Query: 183 SKRAPTSPRIQGIDKELEDQQNLTPGP---QTVPQRQNEEPQEQAHGERSPPPQK----- 242
                    I  ID    +  N  P P      P+ QN+ PQ QA G++ P P K     
Sbjct: 187 ---------IPSIDARKTNYINYAPRPTVGPNAPKSQNDRPQSQASGKQIPTPPKPEEAT 246

Query: 243 ---------------------EKTEEEKAKAHTNLKEASKETRDEERGKEEIGSKMGEGK 302
                                EKT EEK KAHT L++A ++TR+E + +EE GSKM E  
Sbjct: 247 GAPAETSSMGSGQPVEDLAKNEKT-EEKGKAHTKLQDAVEKTREEGK-EEEGGSKMAE-- 306

Query: 303 GKEEEGSHGREEKEGEVAEERRRR--RRSEGTVEES-FLWRREGYKQVIDGVVKELRTTM 354
                     EEKE EV EE+RRR  RRSE   EES  L RR GYKQVIDGVVKELRT M
Sbjct: 307 ----------EEKE-EVGEEKRRRMKRRSEEMGEESGRLRRRRGYKQVIDGVVKELRTNM 358

[Close]

BLAST of Carg18028 vs. ExPASy TrEMBL
Match: A0A6J1F4G3 (inactive protein RESTRICTED TEV MOVEMENT 2-like OS=Cucurbita moschata OX=3662 GN=LOC111440367 PE=3 SV=1)

HSP 1 Score: 646.0 bits (1665), Expect = 9.3e-182
Identity = 353/353 (100.00%), Postives = 353/353 (100.00%), Query Frame = 0


Query: 1   MDSKNYQDFSPRCDWREDHDSRVLTVPLKDFRSSQLKVQVTSTGKLRVSGERMTEGNKWL 60
           MDSKNYQDFSPRCDWREDHDSRVLTVPLKDFRSSQLKVQVTSTGKLRVSGERMTEGNKWL
Sbjct: 1   MDSKNYQDFSPRCDWREDHDSRVLTVPLKDFRSSQLKVQVTSTGKLRVSGERMTEGNKWL 60

Query: 61  RFYKELDVPTDTDTDNISAKFKDGVLFVKHPKKLSAATFPKADPRPPAEPPKPAAGKPKV 120
           RFYKELDVPTDTDTDNISAKFKDGVLFVKHPKKLSAATFPKADPRPPAEPPKPAAGKPKV
Sbjct: 61  RFYKELDVPTDTDTDNISAKFKDGVLFVKHPKKLSAATFPKADPRPPAEPPKPAAGKPKV 120

Query: 121 DPQPPAEPPKPGAGKPKADPRPPAEPPKPAAAKSSIDPPTDPQNAPKSRNEERQSQSSSK 180
           DPQPPAEPPKPGAGKPKADPRPPAEPPKPAAAKSSIDPPTDPQNAPKSRNEERQSQSSSK
Sbjct: 121 DPQPPAEPPKPGAGKPKADPRPPAEPPKPAAAKSSIDPPTDPQNAPKSRNEERQSQSSSK 180

Query: 181 RAPTSPRIQGIDKELEDQQNLTPGPQTVPQRQNEEPQEQAHGERSPPPQKEKTEEEKAKA 240
           RAPTSPRIQGIDKELEDQQNLTPGPQTVPQRQNEEPQEQAHGERSPPPQKEKTEEEKAKA
Sbjct: 181 RAPTSPRIQGIDKELEDQQNLTPGPQTVPQRQNEEPQEQAHGERSPPPQKEKTEEEKAKA 240

Query: 241 HTNLKEASKETRDEERGKEEIGSKMGEGKGKEEEGSHGREEKEGEVAEERRRRRRSEGTV 300
           HTNLKEASKETRDEERGKEEIGSKMGEGKGKEEEGSHGREEKEGEVAEERRRRRRSEGTV
Sbjct: 241 HTNLKEASKETRDEERGKEEIGSKMGEGKGKEEEGSHGREEKEGEVAEERRRRRRSEGTV 300

Query: 301 EESFLWRREGYKQVIDGVVKELRTTMVTLVLGIAVLVILYLKVTNKGHVDEEL 354
           EESFLWRREGYKQVIDGVVKELRTTMVTLVLGIAVLVILYLKVTNKGHVDEEL
Sbjct: 301 EESFLWRREGYKQVIDGVVKELRTTMVTLVLGIAVLVILYLKVTNKGHVDEEL 353

[Close]

BLAST of Carg18028 vs. ExPASy TrEMBL
Match: A0A6J1HQV2 (extensin-like OS=Cucurbita maxima OX=3661 GN=LOC111466983 PE=3 SV=1)

HSP 1 Score: 495.0 bits (1273), Expect = 2.7e-136
Identity = 304/431 (70.53%), Postives = 317/431 (73.55%), Query Frame = 0


Query: 3   SKNYQDFSPRCDWREDHDSRVLTVPLKDFRSSQLKVQVTSTGKLRVSGERMTEGNKWLRF 62
           SKNY+DFSP   W EDH+SRVLTVPLKDFRSSQLKVQVTSTGKLR  GERM EGNKWLRF
Sbjct: 4   SKNYRDFSPTFVWHEDHNSRVLTVPLKDFRSSQLKVQVTSTGKLRAFGERMIEGNKWLRF 63

Query: 63  YKELDVPTDTDTDNISAKFKDGVLFVKHPKKLSAATF----------------------- 122
           YKELDVPTDTDTD ISAKF+DGVL+VKHPKKLSAA                         
Sbjct: 64  YKELDVPTDTDTDKISAKFEDGVLYVKHPKKLSAAASTNLPEKPTSMPKPKPESRPPPAA 123

Query: 123 --------------------------------------PKADPRPPAEPPKPAAGKPKVD 182
                                                 PKADPRPPAEPPKPAAGKPK D
Sbjct: 124 GKPKTDPQPPAEPPKPAAWKPKADPRPPAEPPKPAAGKPKADPRPPAEPPKPAAGKPKAD 183

Query: 183 PQPPAEPPKPGAGKPKADPRPPAEPPKPAAAKSSIDP------------------PTDPQ 242
           P+PPAEPPKP AGKPKADPRPPAEPPKPAA K   DP                  PT PQ
Sbjct: 184 PRPPAEPPKPAAGKPKADPRPPAEPPKPAAGKPKADPQPPAEPPKPAAEKSTVHLPTVPQ 243

Query: 243 NAPKSRNEERQSQSSSKRAPTSPRIQGIDKELEDQQNLTPGPQTVPQRQNEEPQEQAHGE 302
           NAP SRNE+RQSQSSSK APTSP    + KELEDQQNL  GPQTVPQRQNEEPQEQAHG+
Sbjct: 244 NAPNSRNEKRQSQSSSKEAPTSPGTTDLKKELEDQQNLLVGPQTVPQRQNEEPQEQAHGK 303

Query: 303 RSPPPQKEKTEEEKAKAHTNLKEASKETRDEERGKEEIGSKMGEGKGKEEEGSHGREEKE 354
           ++P PQKEKTEEEKAKAHTNLKEA ++TRDEERGKE IGSKMGEGKG  E+GSHGREEKE
Sbjct: 304 QTPSPQKEKTEEEKAKAHTNLKEAMEKTRDEERGKEVIGSKMGEGKGNGEKGSHGREEKE 363

[Close]

BLAST of Carg18028 vs. ExPASy TrEMBL
Match: A0A5A7UKP9 (Inactive protein RESTRICTED TEV MOVEMENT 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G00920 PE=3 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 3.9e-55
Identity = 184/387 (47.55%), Postives = 222/387 (57.36%), Query Frame = 0


Query: 3   SKNYQDFSPRCDWREDHDSRVLTVPLKDFRSSQLKVQVTSTGKLRVSGERMTEGNKWLRF 62
           +KN+Q+F PR DW    DS VL V L  FRS+QLKVQVTSTGKLRVSGER     KWLRF
Sbjct: 7   AKNFQEFEPRYDWVHHPDSHVLVVRLSGFRSNQLKVQVTSTGKLRVSGERKLGNGKWLRF 66

Query: 63  YKELDVPTDTDTDNISAKFKDGVLFVKHPKKLSAATF---PKADPRP-PAEPPKPAAGKP 122
            KE+D+P D DTD ISAK ++G+L+VK PKKLSA +    P   P+P P   P PAA KP
Sbjct: 67  EKEIDIPADADTDKISAKLEEGILYVKQPKKLSATSSNIPPVQQPKPKPQSQPPPAATKP 126

Query: 123 KVDPQPPAEPPKPGAGKPKADPRPPAEPPKPAAAKSSIDPPTDPQNAPKSRNEERQSQSS 182
             DP P   P  P +   +      +EPPKPAA + ++ PPT    AP+S+NE       
Sbjct: 127 TADP-PTVRPSAPKSQNER------SEPPKPAATEPTVAPPTVGPKAPESQNERAD---- 186

Query: 183 SKRAPTSPRIQGIDKELEDQQNLTPGP---QTVPQRQNEEPQEQAHGERSPPPQK----- 242
                    I  ID    +  N  P P      P+ QN+ PQ QA G++ P P K     
Sbjct: 187 ---------IPSIDARKTNYINYAPRPTVGPNAPKSQNDRPQSQASGKQIPTPPKPEEAT 246

Query: 243 ---------------------EKTEEEKAKAHTNLKEASKETRDEERGKEEIGSKMGEGK 302
                                EKT EEK KAHT L++A ++TR+E + +EE GSKM E  
Sbjct: 247 GAPAETSSMGSGQPVEDLAKNEKT-EEKGKAHTKLQDAVEKTREEGK-EEEGGSKMAE-- 306

Query: 303 GKEEEGSHGREEKEGEVAEERRRR--RRSEGTVEES-FLWRREGYKQVIDGVVKELRTTM 354
                     EEKE EV EE+RRR  RRSE   EES  L RR GYKQVIDGVVKELRT M
Sbjct: 307 ----------EEKE-EVGEEKRRRMKRRSEEMGEESGRLRRRRGYKQVIDGVVKELRTNM 358

[Close]

BLAST of Carg18028 vs. ExPASy TrEMBL
Match: A0A5D3CF67 (Inactive protein RESTRICTED TEV MOVEMENT 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G00810 PE=3 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.1e-54
Identity = 183/387 (47.29%), Postives = 221/387 (57.11%), Query Frame = 0


Query: 3   SKNYQDFSPRCDWREDHDSRVLTVPLKDFRSSQLKVQVTSTGKLRVSGERMTEGNKWLRF 62
           +KN+Q+F PR DW    DS VL V L  FRS+QLKVQVTSTGKLR+SGER     KWLRF
Sbjct: 7   AKNFQEFEPRYDWVHHPDSHVLVVRLSGFRSNQLKVQVTSTGKLRISGERKIGNGKWLRF 66

Query: 63  YKELDVPTDTDTDNISAKFKDGVLFVKHPKKLSAATF---PKADPRP-PAEPPKPAAGKP 122
            KE+D+P D DTD ISAK ++G+L+VK PKKLSA +    P   P+P P   P PAA KP
Sbjct: 67  EKEIDIPADADTDKISAKLEEGILYVKQPKKLSATSSNIPPVQQPKPKPQSQPPPAATKP 126

Query: 123 KVDPQPPAEPPKPGAGKPKADPRPPAEPPKPAAAKSSIDPPTDPQNAPKSRNEERQSQSS 182
             DP P   P  P +   +      +EPPKPAA + +  PPT    AP+S+NE       
Sbjct: 127 TADP-PTVRPSAPKSQNER------SEPPKPAATEPTFAPPTVGPKAPESQNERAD---- 186

Query: 183 SKRAPTSPRIQGIDKELEDQQNLTPGP---QTVPQRQNEEPQEQAHGERSPPPQK----- 242
                    I  ID    +  N  P P      P+ QN+ PQ QA G++ P P K     
Sbjct: 187 ---------IPSIDARKTNYINYAPRPTVGPNAPKSQNDRPQSQASGKQIPTPPKPEEAT 246

Query: 243 ---------------------EKTEEEKAKAHTNLKEASKETRDEERGKEEIGSKMGEGK 302
                                EKT EEK KAHT L++A ++TR+E + +EE GSKM E  
Sbjct: 247 GAPAETSSMGSGQPVEDLAKNEKT-EEKGKAHTKLQDAVEKTREEGK-EEEGGSKMAE-- 306

Query: 303 GKEEEGSHGREEKEGEVAEERRRR--RRSEGTVEES-FLWRREGYKQVIDGVVKELRTTM 354
                     EEKE EV EE+RRR  RRSE   EES  L RR GYKQVIDGVVKELRT M
Sbjct: 307 ----------EEKE-EVGEEKRRRMKRRSEEMGEESGRLRRRRGYKQVIDGVVKELRTNM 358

[Close]

BLAST of Carg18028 vs. ExPASy TrEMBL
Match: A0A5D3CDK6 (Inactive protein RESTRICTED TEV MOVEMENT 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G00820 PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 4.5e-51
Identity = 172/383 (44.91%), Postives = 213/383 (55.61%), Query Frame = 0


Query: 3   SKNYQDFSPRCDWREDHDSRVLTVPLKDFRSSQLKVQVTSTGKLRVSGERMTEGNKWLRF 62
           +KN+++F PR DW    DS VL V L  FRS+QLKVQVTSTGKLRVSGER     KWLRF
Sbjct: 7   AKNFEEFEPRFDWVHHPDSHVLVVHLSGFRSNQLKVQVTSTGKLRVSGERKLGNGKWLRF 66

Query: 63  YKELDVPTDTDTDNISAKFKDGVLFVKHPKKLSAATFPKADPRPPAEPPKPAAGKPKVDP 122
            KE+D+P D DTD ISAK ++G+L+VK PKKL       +   PP + P     KPK   
Sbjct: 67  EKEIDIPADADTDKISAKLEEGILYVKQPKKLPTT----SSNIPPVQQP-----KPKAQS 126

Query: 123 QPPAEPPKPGAGKPKADPRPP------AEPPKPAAAKSSIDPPTDPQNAPKSRNEERQSQ 182
           QPP    KP A  P   P  P      AEPPKPAA + ++ PPT    AP+S+NE     
Sbjct: 127 QPPPAATKPTADPPTVRPSVPKSRNERAEPPKPAATEPTVAPPTVGPKAPESQNERAD-- 186

Query: 183 SSSKRAPTSPRIQGIDKELEDQQNLTPGP---QTVPQRQNEEPQEQAHGERSPPP----- 242
                      I   D +  + +N  P P      P+ QN+ PQ QA G++ P P     
Sbjct: 187 -----------IPSTDAKKTNVKNYAPRPTVGPNAPKSQNDRPQSQASGKQIPTPPKPEE 246

Query: 243 -----------------QKEKTEEEKAKAHTNLKEASKETRDEERGKEEIGSKMGEGKGK 302
                            +K+KT EEK KAHT L++A ++TR+E  GKE            
Sbjct: 247 ATGAPSMGSGQPVEDLAKKDKT-EEKGKAHTKLQDALEKTREE--GKE------------ 306

Query: 303 EEEGSHGREEKEGEVAEERRRRRRSEGTVEE-----SFLWRREGYKQVIDGVVKELRTTM 350
           EE GS   EE++ EV EE+RRRRR +   EE       L RREGYKQVIDGVVKE+RT M
Sbjct: 307 EEGGSKKAEEQKEEVGEEKRRRRRMKRRNEEMGEESGRLRRREGYKQVIDGVVKEIRTNM 352

[Close]

BLAST of Carg18028 vs. TAIR 10
Match: AT5G20970.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 92.0 bits (227), Expect = 1.0e-18
Identity = 57/136 (41.91%), Postives = 75/136 (55.15%), Query Frame = 0


Query: 6   YQDFSPRCDWREDHDSRVLTVPLKDFRSSQLKVQVTSTGKLRVSGERMTEGNKWLRFYKE 65
           YQ+F P   W  + D+ VL   L  F+  QLKV VT+T KLR++GER T GNKW+RF++E
Sbjct: 10  YQEFEPATRWTSEPDAEVLVADLPGFKKEQLKVSVTATRKLRLTGERPTGGNKWIRFHQE 69

Query: 66  LDVPTDTDTDNISAKFKDGVLFVKHPKKLSAATFPKADPRPPAEPPKPAAGKP------K 125
           + VP   D D++SA FKD  L+++HPK  +          P  +PP P   KP      K
Sbjct: 70  IPVPLTVDIDSVSAMFKDNKLYIRHPKLKTEI--------PQTKPPTPVIMKPHDQHERK 129

Query: 126 VDPQPPAEPPKPGAGK 136
               P A   KP  GK
Sbjct: 130 QGQGPKAMVEKPSGGK 137

[Close]

BLAST of Carg18028 vs. TAIR 10
Match: AT2G27140.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 66.2 bits (160), Expect = 5.9e-11
Identity = 58/179 (32.40%), Postives = 85/179 (47.49%), Query Frame = 0


Query: 6   YQDFSPRCDWREDHDSRVLTVPLKDFRSSQLKVQVTSTGKLRVSGERMTEGNKWLRFYKE 65
           Y +F P  +W+ +     LT+ L  FR  QLKVQVT+T KLRV G+R    NKW+RF KE
Sbjct: 14  YDEFEPLSNWKTEQGFEALTIYLPGFRKEQLKVQVTTTRKLRVMGDRPAGANKWIRFRKE 73

Query: 66  LDVPTDTDTDNISAKFKDGVLFVKHPKKLSAATFPKADPRPPAEPPKPAAGKPKVDPQPP 125
             +P + D D++SAKF+   L V+ P+             P  + P P     K  P P 
Sbjct: 74  FPIPPNIDVDSVSAKFEGANLVVRLPR-----------TEPMGKQPSPIGTATKPPPVPK 133

Query: 126 AEP--PKPGAGKPKADPRPPAEPPKPAAAKSSIDPPTDPQNAPKSRNEERQSQSSSKRA 183
             P  P P A K K  P     P +    ++ ++   +   +PK   E  ++ +   R+
Sbjct: 134 ENPNLPSPSA-KEKVQP-----PKETRENETELEKQAEKIQSPKPARENEEALNQDYRS 175

[Close]

BLAST of Carg18028 vs. TAIR 10
Match: AT1G54400.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 2.5e-09
Identity = 32/93 (34.41%), Postives = 47/93 (50.54%), Query Frame = 0


Query: 6   YQDFSPRCDWREDHDSRVLTVPL-KDFRSSQLKVQVTSTGKLRVSGERMTEGNKWLRFYK 65
           Y +  P C WR   D  +L + L    +   LK+Q+ ++G L ++G    +  K +RF K
Sbjct: 13  YDEIEPFCRWRRTEDIDILELHLPSGLKKEHLKIQINNSGVLTITGGCPVDQTKTIRFMK 72

Query: 66  ELDVPTDTDTDNISAKFKDGVLFVKHPKKLSAA 98
           E  V  D   + I AKF  GVL+V  PK +  A
Sbjct: 73  ETKVAKDCKRNEIRAKFSKGVLYVTMPKTIPIA 105

The following BLAST results are available for this feature:

BLAST of Carg18028 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933280.1	1.9e-181	100.00	inactive protein RESTRICTED TEV MOVEMENT 2-like [Cucurbita moschata] >KAG6588134...	[more]
XP_022967447.1	5.5e-136	70.53	extensin-like [Cucurbita maxima]	[more]
XP_023530362.1	1.1e-115	76.45	pollen-specific leucine-rich repeat extensin-like protein 1 [Cucurbita pepo subs...	[more]
XP_038880225.1	3.5e-66	55.01	SH3 domain-containing protein C23A1.17-like [Benincasa hispida]	[more]
KAA0055710.1	8.1e-55	47.55	inactive protein RESTRICTED TEV MOVEMENT 2-like [Cucumis melo var. makuwa]	[more]

BLAST of Carg18028 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg18028 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F4G3	9.3e-182	100.00	inactive protein RESTRICTED TEV MOVEMENT 2-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HQV2	2.7e-136	70.53	extensin-like OS=Cucurbita maxima OX=3661 GN=LOC111466983 PE=3 SV=1	[more]
A0A5A7UKP9	3.9e-55	47.55	Inactive protein RESTRICTED TEV MOVEMENT 2-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3CF67	1.1e-54	47.29	Inactive protein RESTRICTED TEV MOVEMENT 2-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3CDK6	4.5e-51	44.91	Inactive protein RESTRICTED TEV MOVEMENT 2-like OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of Carg18028 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20970.1	1.0e-18	41.91	HSP20-like chaperones superfamily protein	[more]
AT2G27140.1	5.9e-11	32.40	HSP20-like chaperones superfamily protein	[more]
AT1G54400.1	2.5e-09	34.41	HSP20-like chaperones superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 230..250
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..185
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 216..300
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 195..215
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..300
None	No IPR available	PANTHER	PTHR43670:SF73	OS03G0656000 PROTEIN	coord: 3..202
None	No IPR available	PANTHER	PTHR43670:SF73	OS03G0656000 PROTEIN	coord: 214..345
None	No IPR available	CDD	cd06464	ACD_sHsps-like	coord: 14..92 e-value: 1.59884E-12 score: 60.6456
IPR008978	HSP20-like chaperone	GENE3D	2.60.40.790		coord: 1..96 e-value: 5.6E-19 score: 70.0
IPR008978	HSP20-like chaperone	SUPERFAMILY	49764	HSP20-like chaperones	coord: 5..93
IPR002068	Alpha crystallin/Hsp20 domain	PFAM	PF00011	HSP20	coord: 14..96 e-value: 4.1E-9 score: 36.5
IPR002068	Alpha crystallin/Hsp20 domain	PROSITE	PS01031	SHSP	coord: 4..109 score: 16.50148
IPR045045	Small heat shock protein RTM2-like	PANTHER	PTHR43670	HEAT SHOCK PROTEIN 26	coord: 214..345
IPR045045	Small heat shock protein RTM2-like	PANTHER	PTHR43670	HEAT SHOCK PROTEIN 26	coord: 3..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18028-RA	Carg18028-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane