Carg18014 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg18014
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr11: 3822524 .. 3823097 (+)
RNA-Seq ExpressionCarg18014
SyntenyCarg18014
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAGAGAACGAGAAATACAGAGAGAGAATGAAGGACTTGGAATGGAGCGAAGCAAGGAAGAGGATGATCGAAGATCAGGCAAAGGCGGAACTGGAATCTCTCCAACTTCTTCATCCCAATCGCTTCGAATACCTAAAGCTCGAACTCAAATCCTTCATCCAACTTCTTCAATCGCAATCGCAATCGCGATCGGAAGAGCTTTTTCATCAGCCGAACACTGTCGAAGCCTCGAGACGACGATCGCCTTCCACTCTCGCTCCTGATTCGCAAGGTCAGTGCCCGCTCTGCTGTCCTTTCCATCTCTTCTTCTTCTTCTTCTTCTTCTTTTCCGATTGTTTACTGATTCATGTGTTTTGTAGCAGAGTCGAGTAGCTGTAGGAAGAGGAGGAAGATGGAGGAAGGAGGACAAATGAAAGTGTACGGGAACGGATTACGGAGAGAGATCGCTGAATCGGAAACGGGAGACAAGAACGGGCGGCGGAGGGATAGAGTTGATGTGGTTCTGGAAAGAGCCGTTGTTTGTCTCCGGAAGATTCAACGCTTCAAAACGGCTCTGATTTCCACCGCCGATTGA

mRNA sequence

AGAGAGAACGAGAAATACAGAGAGAGAATGAAGGACTTGGAATGGAGCGAAGCAAGGAAGAGGATGATCGAAGATCAGGCAAAGGCGGAACTGGAATCTCTCCAACTTCTTCATCCCAATCGCTTCGAATACCTAAAGCTCGAACTCAAATCCTTCATCCAACTTCTTCAATCGCAATCGCAATCGCGATCGGAAGAGCTTTTTCATCAGCCGAACACTGTCGAAGCCTCGAGACGACGATCGCCTTCCACTCTCGCTCCTGATTCGCAAGAGTCGAGTAGCTGTAGGAAGAGGAGGAAGATGGAGGAAGGAGGACAAATGAAAGTGTACGGGAACGGATTACGGAGAGAGATCGCTGAATCGGAAACGGGAGACAAGAACGGGCGGCGGAGGGATAGAGTTGATGTGGTTCTGGAAAGAGCCGTTGTTTGTCTCCGGAAGATTCAACGCTTCAAAACGGCTCTGATTTCCACCGCCGATTGA

Coding sequence (CDS)

AGAGAGAACGAGAAATACAGAGAGAGAATGAAGGACTTGGAATGGAGCGAAGCAAGGAAGAGGATGATCGAAGATCAGGCAAAGGCGGAACTGGAATCTCTCCAACTTCTTCATCCCAATCGCTTCGAATACCTAAAGCTCGAACTCAAATCCTTCATCCAACTTCTTCAATCGCAATCGCAATCGCGATCGGAAGAGCTTTTTCATCAGCCGAACACTGTCGAAGCCTCGAGACGACGATCGCCTTCCACTCTCGCTCCTGATTCGCAAGAGTCGAGTAGCTGTAGGAAGAGGAGGAAGATGGAGGAAGGAGGACAAATGAAAGTGTACGGGAACGGATTACGGAGAGAGATCGCTGAATCGGAAACGGGAGACAAGAACGGGCGGCGGAGGGATAGAGTTGATGTGGTTCTGGAAAGAGCCGTTGTTTGTCTCCGGAAGATTCAACGCTTCAAAACGGCTCTGATTTCCACCGCCGATTGA

Protein sequence

RENEKYRERMKDLEWSEARKRMIEDQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQSQSRSEELFHQPNTVEASRRRSPSTLAPDSQESSSCRKRRKMEEGGQMKVYGNGLRREIAESETGDKNGRRRDRVDVVLERAVVCLRKIQRFKTALISTAD
Homology
BLAST of Carg18014 vs. NCBI nr
Match: KAG7022043.1 (hypothetical protein SDJN02_15772, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 295.4 bits (755), Expect = 2.9e-76
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0

Query: 1   RENEKYRERMKDLEWSEARKRMIEDQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQS 60
           RENEKYRERMKDLEWSEARKRMIEDQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQS
Sbjct: 1   RENEKYRERMKDLEWSEARKRMIEDQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQS 60

Query: 61  QSRSEELFHQPNTVEASRRRSPSTLAPDSQESSSCRKRRKMEEGGQMKVYGNGLRREIAE 120
           QSRSEELFHQPNTVEASRRRSPSTLAPDSQESSSCRKRRKMEEGGQMKVYGNGLRREIAE
Sbjct: 61  QSRSEELFHQPNTVEASRRRSPSTLAPDSQESSSCRKRRKMEEGGQMKVYGNGLRREIAE 120

Query: 121 SETGDKNGRRRDRVDVVLERAVVCLRKIQRFKTALISTAD 161
           SETGDKNGRRRDRVDVVLERAVVCLRKIQRFKTALISTAD
Sbjct: 121 SETGDKNGRRRDRVDVVLERAVVCLRKIQRFKTALISTAD 160

BLAST of Carg18014 vs. NCBI nr
Match: XP_022933880.1 (uncharacterized protein LOC111441161 isoform X2 [Cucurbita moschata] >KAG6588149.1 hypothetical protein SDJN03_16714, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 280.4 bits (716), Expect = 9.6e-72
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0

Query: 10  MKDLEWSEARKRMIEDQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQSQSRSEELFH 69
           MKDLEWSEARKRMIEDQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQSQSRSEELFH
Sbjct: 1   MKDLEWSEARKRMIEDQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQSQSRSEELFH 60

Query: 70  QPNTVEASRRRSPSTLAPDSQESSSCRKRRKMEEGGQMKVYGNGLRREIAESETGDKNGR 129
           QPNTVEASRRRSPSTLAPDSQESSSCRKRRKMEEGGQMKVYGNGLRREIAESETGDKNGR
Sbjct: 61  QPNTVEASRRRSPSTLAPDSQESSSCRKRRKMEEGGQMKVYGNGLRREIAESETGDKNGR 120

Query: 130 RRDRVDVVLERAVVCLRKIQRFKTALISTAD 161
           RRDRVDVVLERAVVCLRKIQRFKTALISTAD
Sbjct: 121 RRDRVDVVLERAVVCLRKIQRFKTALISTAD 151

BLAST of Carg18014 vs. NCBI nr
Match: XP_022933879.1 (uncharacterized protein LOC111441161 isoform X1 [Cucurbita moschata])

HSP 1 Score: 275.8 bits (704), Expect = 2.4e-70
Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 0

Query: 10  MKDLEWSEARKRMIEDQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQSQSRSEELFH 69
           MKDLEWSEARKRMIEDQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQSQSRSEELFH
Sbjct: 1   MKDLEWSEARKRMIEDQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQSQSRSEELFH 60

Query: 70  QPNTVEASRRRSPSTLAPDSQ-ESSSCRKRRKMEEGGQMKVYGNGLRREIAESETGDKNG 129
           QPNTVEASRRRSPSTLAPDSQ ESSSCRKRRKMEEGGQMKVYGNGLRREIAESETGDKNG
Sbjct: 61  QPNTVEASRRRSPSTLAPDSQAESSSCRKRRKMEEGGQMKVYGNGLRREIAESETGDKNG 120

Query: 130 RRRDRVDVVLERAVVCLRKIQRFKTALISTAD 161
           RRRDRVDVVLERAVVCLRKIQRFKTALISTAD
Sbjct: 121 RRRDRVDVVLERAVVCLRKIQRFKTALISTAD 152

BLAST of Carg18014 vs. NCBI nr
Match: XP_023531053.1 (uncharacterized protein LOC111793421 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 272.7 bits (696), Expect = 2.0e-69
Identity = 147/151 (97.35%), Postives = 149/151 (98.68%), Query Frame = 0

Query: 10  MKDLEWSEARKRMIEDQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQSQSRSEELFH 69
           M DLEWSEARKRMIEDQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQSQS+SEELFH
Sbjct: 1   MTDLEWSEARKRMIEDQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQSQSQSEELFH 60

Query: 70  QPNTVEASRRRSPSTLAPDSQESSSCRKRRKMEEGGQMKVYGNGLRREIAESETGDKNGR 129
           QPNTVEASRRRSPS+LAPDSQESSSCRKRRK EEGGQMKVYGNGLRREIAESETGDKNGR
Sbjct: 61  QPNTVEASRRRSPSSLAPDSQESSSCRKRRKTEEGGQMKVYGNGLRREIAESETGDKNGR 120

Query: 130 RRDRVDVVLERAVVCLRKIQRFKTALISTAD 161
           RRDRVDVVLERAVVCLRKIQRFKTALISTAD
Sbjct: 121 RRDRVDVVLERAVVCLRKIQRFKTALISTAD 151

BLAST of Carg18014 vs. NCBI nr
Match: XP_022968454.1 (uncharacterized protein LOC111467682 isoform X2 [Cucurbita maxima])

HSP 1 Score: 257.3 bits (656), Expect = 8.7e-65
Identity = 142/150 (94.67%), Postives = 145/150 (96.67%), Query Frame = 0

Query: 10  MKDLEWSEARKRMIEDQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQSQSRSEELFH 69
           M DLEWSEARKRMIEDQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQSQ  SEELFH
Sbjct: 1   MTDLEWSEARKRMIEDQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQSQ--SEELFH 60

Query: 70  QPNTVEASRRRSPSTLAPDSQESSSCRKRRKMEEGGQMKVYGNGLRREIAESETGDKNGR 129
           QPN VEASRRRSPS+LAPDSQESSSCRKRRKMEEGGQMKVYG+ L+REIAESETGDKNGR
Sbjct: 61  QPNAVEASRRRSPSSLAPDSQESSSCRKRRKMEEGGQMKVYGDRLQREIAESETGDKNGR 120

Query: 130 RRDRVDVVLERAVVCLRKIQRFKTALISTA 160
           RRDRVDVVLERAVVCLRKIQRFKTALISTA
Sbjct: 121 RRDRVDVVLERAVVCLRKIQRFKTALISTA 148

BLAST of Carg18014 vs. ExPASy TrEMBL
Match: A0A6J1F625 (uncharacterized protein LOC111441161 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111441161 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 4.7e-72
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0

Query: 10  MKDLEWSEARKRMIEDQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQSQSRSEELFH 69
           MKDLEWSEARKRMIEDQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQSQSRSEELFH
Sbjct: 1   MKDLEWSEARKRMIEDQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQSQSRSEELFH 60

Query: 70  QPNTVEASRRRSPSTLAPDSQESSSCRKRRKMEEGGQMKVYGNGLRREIAESETGDKNGR 129
           QPNTVEASRRRSPSTLAPDSQESSSCRKRRKMEEGGQMKVYGNGLRREIAESETGDKNGR
Sbjct: 61  QPNTVEASRRRSPSTLAPDSQESSSCRKRRKMEEGGQMKVYGNGLRREIAESETGDKNGR 120

Query: 130 RRDRVDVVLERAVVCLRKIQRFKTALISTAD 161
           RRDRVDVVLERAVVCLRKIQRFKTALISTAD
Sbjct: 121 RRDRVDVVLERAVVCLRKIQRFKTALISTAD 151

BLAST of Carg18014 vs. ExPASy TrEMBL
Match: A0A6J1F0Z4 (uncharacterized protein LOC111441161 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111441161 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.1e-70
Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 0

Query: 10  MKDLEWSEARKRMIEDQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQSQSRSEELFH 69
           MKDLEWSEARKRMIEDQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQSQSRSEELFH
Sbjct: 1   MKDLEWSEARKRMIEDQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQSQSRSEELFH 60

Query: 70  QPNTVEASRRRSPSTLAPDSQ-ESSSCRKRRKMEEGGQMKVYGNGLRREIAESETGDKNG 129
           QPNTVEASRRRSPSTLAPDSQ ESSSCRKRRKMEEGGQMKVYGNGLRREIAESETGDKNG
Sbjct: 61  QPNTVEASRRRSPSTLAPDSQAESSSCRKRRKMEEGGQMKVYGNGLRREIAESETGDKNG 120

Query: 130 RRRDRVDVVLERAVVCLRKIQRFKTALISTAD 161
           RRRDRVDVVLERAVVCLRKIQRFKTALISTAD
Sbjct: 121 RRRDRVDVVLERAVVCLRKIQRFKTALISTAD 152

BLAST of Carg18014 vs. ExPASy TrEMBL
Match: A0A6J1HZP5 (uncharacterized protein LOC111467682 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467682 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 4.2e-65
Identity = 142/150 (94.67%), Postives = 145/150 (96.67%), Query Frame = 0

Query: 10  MKDLEWSEARKRMIEDQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQSQSRSEELFH 69
           M DLEWSEARKRMIEDQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQSQ  SEELFH
Sbjct: 1   MTDLEWSEARKRMIEDQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQSQ--SEELFH 60

Query: 70  QPNTVEASRRRSPSTLAPDSQESSSCRKRRKMEEGGQMKVYGNGLRREIAESETGDKNGR 129
           QPN VEASRRRSPS+LAPDSQESSSCRKRRKMEEGGQMKVYG+ L+REIAESETGDKNGR
Sbjct: 61  QPNAVEASRRRSPSSLAPDSQESSSCRKRRKMEEGGQMKVYGDRLQREIAESETGDKNGR 120

Query: 130 RRDRVDVVLERAVVCLRKIQRFKTALISTA 160
           RRDRVDVVLERAVVCLRKIQRFKTALISTA
Sbjct: 121 RRDRVDVVLERAVVCLRKIQRFKTALISTA 148

BLAST of Carg18014 vs. ExPASy TrEMBL
Match: A0A6J1HY07 (uncharacterized protein LOC111467682 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467682 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 1.0e-63
Identity = 142/151 (94.04%), Postives = 145/151 (96.03%), Query Frame = 0

Query: 10  MKDLEWSEARKRMIEDQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQSQSRSEELFH 69
           M DLEWSEARKRMIEDQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQSQ  SEELFH
Sbjct: 1   MTDLEWSEARKRMIEDQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQSQ--SEELFH 60

Query: 70  QPNTVEASRRRSPSTLAPDSQ-ESSSCRKRRKMEEGGQMKVYGNGLRREIAESETGDKNG 129
           QPN VEASRRRSPS+LAPDSQ ESSSCRKRRKMEEGGQMKVYG+ L+REIAESETGDKNG
Sbjct: 61  QPNAVEASRRRSPSSLAPDSQAESSSCRKRRKMEEGGQMKVYGDRLQREIAESETGDKNG 120

Query: 130 RRRDRVDVVLERAVVCLRKIQRFKTALISTA 160
           RRRDRVDVVLERAVVCLRKIQRFKTALISTA
Sbjct: 121 RRRDRVDVVLERAVVCLRKIQRFKTALISTA 149

BLAST of Carg18014 vs. ExPASy TrEMBL
Match: A0A5D3DU40 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5245G00010 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 4.4e-38
Identity = 104/157 (66.24%), Postives = 121/157 (77.07%), Query Frame = 0

Query: 3   NEKYRERMKDLEWSEARKRMIEDQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQSQS 62
           NE Y ER+  LEWS+ARK MIE+QA  EL+SLQLL+PNRFEYLKLELKSFI LLQSQ   
Sbjct: 11  NETYTERISSLEWSKARKTMIEEQANVELQSLQLLYPNRFEYLKLELKSFIHLLQSQ--- 70

Query: 63  RSEELFHQPNTVEASRRR-SPSTLAPDSQESSSCRKRRKMEEGGQMKVYGNGLRREIAES 122
            SE  F QPNT+  S R  SP +  PD+QESSSCRKRRK+EEG   +   NGL+RE+AES
Sbjct: 71  -SEHPFPQPNTILTSNRSPSPFSFGPDTQESSSCRKRRKVEEGRNSR--RNGLQREVAES 130

Query: 123 ETGDKNGRRRDRVDVVLERAVVCLRKIQRFKTALIST 159
           E+  K GRR+DRV+VVLERA VCL KI+RFK AL S+
Sbjct: 131 ES--KIGRRKDRVEVVLERAAVCLCKIRRFKMALFSS 159

BLAST of Carg18014 vs. TAIR 10
Match: AT5G36960.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 54.7 bits (130), Expect = 8.0e-08
Identity = 52/151 (34.44%), Postives = 80/151 (52.98%), Query Frame = 0

Query: 16  SEARKRMIEDQAKAELESLQLLHPNRFEYLKLELKSFIQLLQSQSQSRSEELFHQPNTVE 75
           S + +  + + AK ELE LQ  +PNRF YLK +L+SFI  L+                  
Sbjct: 4   SSSWEMQLVETAKEELEILQSQYPNRFAYLKSDLQSFISHLRED---------------H 63

Query: 76  ASRRRSPSTLAPDSQESSSCRKRRKMEEGGQMKVYGNGLRREIAESETG------DKNGR 135
           A  R SPS+    +QESS+C  ++K +   + K   + L  + + S TG      +K G+
Sbjct: 64  APPRLSPSSSVVLTQESSNCNYKQKHK---KRKCVMDNLGDQASSSTTGKIHKNNNKMGQ 123

Query: 136 R-----RDRVDVVLERAVVCLRKIQRFKTAL 156
           R     ++RV++VLERA +CL+KI+  K +L
Sbjct: 124 RVVTKKKNRVEMVLERAQLCLQKIRDVKASL 136

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7022043.12.9e-76100.00hypothetical protein SDJN02_15772, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022933880.19.6e-72100.00uncharacterized protein LOC111441161 isoform X2 [Cucurbita moschata] >KAG6588149... [more]
XP_022933879.12.4e-7099.34uncharacterized protein LOC111441161 isoform X1 [Cucurbita moschata][more]
XP_023531053.12.0e-6997.35uncharacterized protein LOC111793421 [Cucurbita pepo subsp. pepo][more]
XP_022968454.18.7e-6594.67uncharacterized protein LOC111467682 isoform X2 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1F6254.7e-72100.00uncharacterized protein LOC111441161 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1F0Z41.1e-7099.34uncharacterized protein LOC111441161 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1HZP54.2e-6594.67uncharacterized protein LOC111467682 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1HY071.0e-6394.04uncharacterized protein LOC111467682 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A5D3DU404.4e-3866.24Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
AT5G36960.18.0e-0834.44unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..91
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..130

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18014-RACarg18014-RAmRNA