Carg18004 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTGCATACACCAGATCAACAACCTTCTCAGACCAATGGCTTCTTGCAACCATAGCTCTTATAATCTCCGGATTCTTAGCCTATGCCATTTACGACGCCGCCATCGCCTCGGCCTCCGAGGTGTTACAGAGGCTCGTCATCGTCTCGCCCCTGCTTTTGGTCGTCGTCGTTCACTGGCTGTCCCTCGGCGGCGGCGGCGGCGGCGGCGGCGGAAACAGTTACTACAGCCATAACCAGACGGCTGTGGGATTTCCATGGGGTGTTGGGTTTCTTTTGCTTTTGCTTCTATTTCCATGGAGTGCTGCCATTCTTCTTCTTATGCTTTATTTCTTCTTTCTTACCAACTGA ATGGCTGCATACACCAGATCAACAACCTTCTCAGACCAATGGCTTCTTGCAACCATAGCTCTTATAATCTCCGGATTCTTAGCCTATGCCATTTACGACGCCGCCATCGCCTCGGCCTCCGAGGTGTTACAGAGGCTCGTCATCGTCTCGCCCCTGCTTTTGGTCGTCGTCGTTCACTGGCTGTCCCTCGGCGGCGGCGGCGGCGGCGGCGGCGGAAACAGTTACTACAGCCATAACCAGACGGCTGTGGGATTTCCATGGGGTGTTGGGTTTCTTTTGCTTTTGCTTCTATTTCCATGGAGTGCTGCCATTCTTCTTCTTATGCTTTATTTCTTCTTTCTTACCAACTGA ATGGCTGCATACACCAGATCAACAACCTTCTCAGACCAATGGCTTCTTGCAACCATAGCTCTTATAATCTCCGGATTCTTAGCCTATGCCATTTACGACGCCGCCATCGCCTCGGCCTCCGAGGTGTTACAGAGGCTCGTCATCGTCTCGCCCCTGCTTTTGGTCGTCGTCGTTCACTGGCTGTCCCTCGGCGGCGGCGGCGGCGGCGGCGGCGGAAACAGTTACTACAGCCATAACCAGACGGCTGTGGGATTTCCATGGGGTGTTGGGTTTCTTTTGCTTTTGCTTCTATTTCCATGGAGTGCTGCCATTCTTCTTCTTATGCTTTATTTCTTCTTTCTTACCAACTGA MAAYTRSTTFSDQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLVVVVHWLSLGGGGGGGGGNSYYSHNQTAVGFPWGVGFLLLLLLFPWSAAILLLMLYFFFLTN Homology
BLAST of Carg18004 vs. NCBI nr
Match: KAG6588160.1 (hypothetical protein SDJN03_16725, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022053.1 hypothetical protein SDJN02_15782, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 215.3 bits (547), Expect = 2.8e-52 Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0
BLAST of Carg18004 vs. NCBI nr
Match: XP_011660097.1 (uncharacterized protein LOC105436341 [Cucumis sativus] >KAA0042234.1 DNA (cytosine-5)-methyltransferase CMT3-like [Cucumis melo var. makuwa] >TYK14254.1 DNA (cytosine-5)-methyltransferase CMT3-like [Cucumis melo var. makuwa]) HSP 1 Score: 157.1 bits (396), Expect = 8.9e-35 Identity = 87/110 (79.09%), Postives = 95/110 (86.36%), Query Frame = 0
BLAST of Carg18004 vs. NCBI nr
Match: XP_022157357.1 (uncharacterized protein LOC111024080 [Momordica charantia]) HSP 1 Score: 143.7 bits (361), Expect = 1.0e-30 Identity = 83/116 (71.55%), Postives = 94/116 (81.03%), Query Frame = 0
BLAST of Carg18004 vs. NCBI nr
Match: KAE8653489.1 (hypothetical protein Csa_006929, partial [Cucumis sativus]) HSP 1 Score: 118.2 bits (295), Expect = 4.6e-23 Identity = 63/84 (75.00%), Postives = 70/84 (83.33%), Query Frame = 0
BLAST of Carg18004 vs. NCBI nr
Match: OMP03394.1 (hypothetical protein COLO4_10451 [Corchorus olitorius]) HSP 1 Score: 85.9 bits (211), Expect = 2.5e-13 Identity = 51/96 (53.12%), Postives = 67/96 (69.79%), Query Frame = 0
BLAST of Carg18004 vs. ExPASy TrEMBL
Match: A0A5A7TFN5 (DNA (Cytosine-5)-methyltransferase CMT3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1121G00430 PE=4 SV=1) HSP 1 Score: 157.1 bits (396), Expect = 4.3e-35 Identity = 87/110 (79.09%), Postives = 95/110 (86.36%), Query Frame = 0
BLAST of Carg18004 vs. ExPASy TrEMBL
Match: A0A0A0M2K2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G604070 PE=4 SV=1) HSP 1 Score: 157.1 bits (396), Expect = 4.3e-35 Identity = 87/110 (79.09%), Postives = 95/110 (86.36%), Query Frame = 0
BLAST of Carg18004 vs. ExPASy TrEMBL
Match: A0A6J1DUA1 (uncharacterized protein LOC111024080 OS=Momordica charantia OX=3673 GN=LOC111024080 PE=4 SV=1) HSP 1 Score: 143.7 bits (361), Expect = 4.9e-31 Identity = 83/116 (71.55%), Postives = 94/116 (81.03%), Query Frame = 0
BLAST of Carg18004 vs. ExPASy TrEMBL
Match: A0A1R3K8K8 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_10451 PE=4 SV=1) HSP 1 Score: 85.9 bits (211), Expect = 1.2e-13 Identity = 51/96 (53.12%), Postives = 67/96 (69.79%), Query Frame = 0
BLAST of Carg18004 vs. ExPASy TrEMBL
Match: A0A1R3HRX6 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_17460 PE=4 SV=1) HSP 1 Score: 84.3 bits (207), Expect = 3.6e-13 Identity = 50/94 (53.19%), Postives = 63/94 (67.02%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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