Carg18004 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg18004
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDNA (Cytosine-5)-methyltransferase CMT3-like
LocationCarg_Chr11: 3896646 .. 3896996 (-)
RNA-Seq ExpressionCarg18004
SyntenyCarg18004
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCATACACCAGATCAACAACCTTCTCAGACCAATGGCTTCTTGCAACCATAGCTCTTATAATCTCCGGATTCTTAGCCTATGCCATTTACGACGCCGCCATCGCCTCGGCCTCCGAGGTGTTACAGAGGCTCGTCATCGTCTCGCCCCTGCTTTTGGTCGTCGTCGTTCACTGGCTGTCCCTCGGCGGCGGCGGCGGCGGCGGCGGCGGAAACAGTTACTACAGCCATAACCAGACGGCTGTGGGATTTCCATGGGGTGTTGGGTTTCTTTTGCTTTTGCTTCTATTTCCATGGAGTGCTGCCATTCTTCTTCTTATGCTTTATTTCTTCTTTCTTACCAACTGA

mRNA sequence

ATGGCTGCATACACCAGATCAACAACCTTCTCAGACCAATGGCTTCTTGCAACCATAGCTCTTATAATCTCCGGATTCTTAGCCTATGCCATTTACGACGCCGCCATCGCCTCGGCCTCCGAGGTGTTACAGAGGCTCGTCATCGTCTCGCCCCTGCTTTTGGTCGTCGTCGTTCACTGGCTGTCCCTCGGCGGCGGCGGCGGCGGCGGCGGCGGAAACAGTTACTACAGCCATAACCAGACGGCTGTGGGATTTCCATGGGGTGTTGGGTTTCTTTTGCTTTTGCTTCTATTTCCATGGAGTGCTGCCATTCTTCTTCTTATGCTTTATTTCTTCTTTCTTACCAACTGA

Coding sequence (CDS)

ATGGCTGCATACACCAGATCAACAACCTTCTCAGACCAATGGCTTCTTGCAACCATAGCTCTTATAATCTCCGGATTCTTAGCCTATGCCATTTACGACGCCGCCATCGCCTCGGCCTCCGAGGTGTTACAGAGGCTCGTCATCGTCTCGCCCCTGCTTTTGGTCGTCGTCGTTCACTGGCTGTCCCTCGGCGGCGGCGGCGGCGGCGGCGGCGGAAACAGTTACTACAGCCATAACCAGACGGCTGTGGGATTTCCATGGGGTGTTGGGTTTCTTTTGCTTTTGCTTCTATTTCCATGGAGTGCTGCCATTCTTCTTCTTATGCTTTATTTCTTCTTTCTTACCAACTGA

Protein sequence

MAAYTRSTTFSDQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLVVVVHWLSLGGGGGGGGGNSYYSHNQTAVGFPWGVGFLLLLLLFPWSAAILLLMLYFFFLTN
Homology
BLAST of Carg18004 vs. NCBI nr
Match: KAG6588160.1 (hypothetical protein SDJN03_16725, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022053.1 hypothetical protein SDJN02_15782, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 215.3 bits (547), Expect = 2.8e-52
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0

Query: 1   MAAYTRSTTFSDQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLVVVVHW 60
           MAAYTRSTTFSDQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLVVVVHW
Sbjct: 1   MAAYTRSTTFSDQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLVVVVHW 60

Query: 61  LSLGGGGGGGGGNSYYSHNQTAVGFPWGVGFLLLLLLFPWSAAILLLMLYFFFLTN 117
           LSLGGGGGGGGGNSYYSHNQTAVGFPWGVGFLLLLLLFPWSAAILLLMLYFFFLTN
Sbjct: 61  LSLGGGGGGGGGNSYYSHNQTAVGFPWGVGFLLLLLLFPWSAAILLLMLYFFFLTN 116

BLAST of Carg18004 vs. NCBI nr
Match: XP_011660097.1 (uncharacterized protein LOC105436341 [Cucumis sativus] >KAA0042234.1 DNA (cytosine-5)-methyltransferase CMT3-like [Cucumis melo var. makuwa] >TYK14254.1 DNA (cytosine-5)-methyltransferase CMT3-like [Cucumis melo var. makuwa])

HSP 1 Score: 157.1 bits (396), Expect = 8.9e-35
Identity = 87/110 (79.09%), Postives = 95/110 (86.36%), Query Frame = 0

Query: 7   STTFSDQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLVVVVHWLSLGGG 66
           S +FSDQWLLATIALII GFLAYA+YDAA+ASASEV QRLV+VSPLLLVV VHWLSLG  
Sbjct: 9   SLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLSLGRD 68

Query: 67  GGGGGGNSYYSHNQTAVGFPWGVGFLLLLLLFPWSAAILLLMLYFFFLTN 117
           GG       Y++N +AVGFPWGVGFLLLLLLFPWS AILLL+LYFFFLTN
Sbjct: 69  GG-------YNNNHSAVGFPWGVGFLLLLLLFPWSVAILLLLLYFFFLTN 111

BLAST of Carg18004 vs. NCBI nr
Match: XP_022157357.1 (uncharacterized protein LOC111024080 [Momordica charantia])

HSP 1 Score: 143.7 bits (361), Expect = 1.0e-30
Identity = 83/116 (71.55%), Postives = 94/116 (81.03%), Query Frame = 0

Query: 1   MAAYTRSTTFSDQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLVVVVHW 60
           MAA TRS   S+QWLLAT+ALI  GFLAYAIYDAA+AS +E+ QR+V+VSPLLLVV VHW
Sbjct: 1   MAAPTRSGG-SEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHW 60

Query: 61  LSLGGGGGGGGGNSYYSHNQTAVGFPWGVGFLLLLLLFPWSAAILLLMLYFFFLTN 117
           LS+GGG  G G        Q AVGFPWGVG LLLL+LFPWSAA+LLL+LYFFFLTN
Sbjct: 61  LSIGGGSSGCG-------TQAAVGFPWGVGLLLLLILFPWSAALLLLLLYFFFLTN 108

BLAST of Carg18004 vs. NCBI nr
Match: KAE8653489.1 (hypothetical protein Csa_006929, partial [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 4.6e-23
Identity = 63/84 (75.00%), Postives = 70/84 (83.33%), Query Frame = 0

Query: 7  STTFSDQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLVVVVHWLSLGGG 66
          S +FSDQWLLATIALII GFLAYA+YDAA+ASASEV QRLV+VSPLLLVV VHWLSLG  
Sbjct: 9  SLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLSLGRD 68

Query: 67 GGGGGGNSYYSHNQTAVGFPWGVG 91
          GG       Y++N +AVGFPWGVG
Sbjct: 69 GG-------YNNNHSAVGFPWGVG 85

BLAST of Carg18004 vs. NCBI nr
Match: OMP03394.1 (hypothetical protein COLO4_10451 [Corchorus olitorius])

HSP 1 Score: 85.9 bits (211), Expect = 2.5e-13
Identity = 51/96 (53.12%), Postives = 67/96 (69.79%), Query Frame = 0

Query: 5   TRSTTF--SDQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLVVVVHWLS 64
           +R++TF  S+QWLL T ++++ GFL Y +YDA +A+A+E+LQRL+I+SPLLLVVVVHWLS
Sbjct: 8   SRTSTFTPSEQWLLLTASVLVCGFLGYVVYDAIMATAAELLQRLLIISPLLLVVVVHWLS 67

Query: 65  LGGGGGGGGGNSYYSHNQTAVGFPWGVGFLLLLLLF 99
            G         S       A G PWGV F+LLLL F
Sbjct: 68  TGSNLNFPMPGSEPGAIHRAGGSPWGVAFVLLLLFF 103

BLAST of Carg18004 vs. ExPASy TrEMBL
Match: A0A5A7TFN5 (DNA (Cytosine-5)-methyltransferase CMT3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1121G00430 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.3e-35
Identity = 87/110 (79.09%), Postives = 95/110 (86.36%), Query Frame = 0

Query: 7   STTFSDQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLVVVVHWLSLGGG 66
           S +FSDQWLLATIALII GFLAYA+YDAA+ASASEV QRLV+VSPLLLVV VHWLSLG  
Sbjct: 9   SLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLSLGRD 68

Query: 67  GGGGGGNSYYSHNQTAVGFPWGVGFLLLLLLFPWSAAILLLMLYFFFLTN 117
           GG       Y++N +AVGFPWGVGFLLLLLLFPWS AILLL+LYFFFLTN
Sbjct: 69  GG-------YNNNHSAVGFPWGVGFLLLLLLFPWSVAILLLLLYFFFLTN 111

BLAST of Carg18004 vs. ExPASy TrEMBL
Match: A0A0A0M2K2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G604070 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.3e-35
Identity = 87/110 (79.09%), Postives = 95/110 (86.36%), Query Frame = 0

Query: 7   STTFSDQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLVVVVHWLSLGGG 66
           S +FSDQWLLATIALII GFLAYA+YDAA+ASASEV QRLV+VSPLLLVV VHWLSLG  
Sbjct: 9   SLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLSLGRD 68

Query: 67  GGGGGGNSYYSHNQTAVGFPWGVGFLLLLLLFPWSAAILLLMLYFFFLTN 117
           GG       Y++N +AVGFPWGVGFLLLLLLFPWS AILLL+LYFFFLTN
Sbjct: 69  GG-------YNNNHSAVGFPWGVGFLLLLLLFPWSVAILLLLLYFFFLTN 111

BLAST of Carg18004 vs. ExPASy TrEMBL
Match: A0A6J1DUA1 (uncharacterized protein LOC111024080 OS=Momordica charantia OX=3673 GN=LOC111024080 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 4.9e-31
Identity = 83/116 (71.55%), Postives = 94/116 (81.03%), Query Frame = 0

Query: 1   MAAYTRSTTFSDQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLVVVVHW 60
           MAA TRS   S+QWLLAT+ALI  GFLAYAIYDAA+AS +E+ QR+V+VSPLLLVV VHW
Sbjct: 1   MAAPTRSGG-SEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHW 60

Query: 61  LSLGGGGGGGGGNSYYSHNQTAVGFPWGVGFLLLLLLFPWSAAILLLMLYFFFLTN 117
           LS+GGG  G G        Q AVGFPWGVG LLLL+LFPWSAA+LLL+LYFFFLTN
Sbjct: 61  LSIGGGSSGCG-------TQAAVGFPWGVGLLLLLILFPWSAALLLLLLYFFFLTN 108

BLAST of Carg18004 vs. ExPASy TrEMBL
Match: A0A1R3K8K8 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_10451 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.2e-13
Identity = 51/96 (53.12%), Postives = 67/96 (69.79%), Query Frame = 0

Query: 5   TRSTTF--SDQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLVVVVHWLS 64
           +R++TF  S+QWLL T ++++ GFL Y +YDA +A+A+E+LQRL+I+SPLLLVVVVHWLS
Sbjct: 8   SRTSTFTPSEQWLLLTASVLVCGFLGYVVYDAIMATAAELLQRLLIISPLLLVVVVHWLS 67

Query: 65  LGGGGGGGGGNSYYSHNQTAVGFPWGVGFLLLLLLF 99
            G         S       A G PWGV F+LLLL F
Sbjct: 68  TGSNLNFPMPGSEPGAIHRAGGSPWGVAFVLLLLFF 103

BLAST of Carg18004 vs. ExPASy TrEMBL
Match: A0A1R3HRX6 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_17460 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.6e-13
Identity = 50/94 (53.19%), Postives = 63/94 (67.02%), Query Frame = 0

Query: 5   TRSTTFSDQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLVVVVHWLSLG 64
           T   T S+QWLL T ++++ GFL Y +YDA +A+A+E+LQRL+I+SPLLLVVVVHWLS G
Sbjct: 10  TSPFTPSEQWLLLTASVLVCGFLGYVVYDAIMATAAELLQRLLIISPLLLVVVVHWLSTG 69

Query: 65  GGGGGGGGNSYYSHNQTAVGFPWGVGFLLLLLLF 99
                    S       A G PWGV F+LLLL F
Sbjct: 70  SNLNFPMPGSEPGAIHRAGGSPWGVAFVLLLLFF 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6588160.12.8e-52100.00hypothetical protein SDJN03_16725, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_011660097.18.9e-3579.09uncharacterized protein LOC105436341 [Cucumis sativus] >KAA0042234.1 DNA (cytosi... [more]
XP_022157357.11.0e-3071.55uncharacterized protein LOC111024080 [Momordica charantia][more]
KAE8653489.14.6e-2375.00hypothetical protein Csa_006929, partial [Cucumis sativus][more]
OMP03394.12.5e-1353.13hypothetical protein COLO4_10451 [Corchorus olitorius][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TFN54.3e-3579.09DNA (Cytosine-5)-methyltransferase CMT3-like OS=Cucumis melo var. makuwa OX=1194... [more]
A0A0A0M2K24.3e-3579.09Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G604070 PE=4 SV=1[more]
A0A6J1DUA14.9e-3171.55uncharacterized protein LOC111024080 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A1R3K8K81.2e-1353.13Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_10451 PE=4 SV=1[more]
A0A1R3HRX63.6e-1353.19Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_17460 PE=4 ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33306EXPRESSED PROTEIN-RELATED-RELATEDcoord: 5..111
NoneNo IPR availablePANTHERPTHR33306:SF22PERIPHERAL-TYPE BENZODIAZEPINE RECEPTOR-ASSOCIATED PROTEIN 1coord: 5..111

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18004-RACarg18004-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane