Carg17981 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg17981
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr11: 4094532 .. 4098577 (-)
RNA-Seq ExpressionCarg17981
SyntenyCarg17981
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTAGGAGCAAGCGAATATCATTCCGAAGGAAATACACTCTATTGATCTCAACCCAGCTTGTCCTTATCAGTTGGCCTTTCATCTTGACGACGGATGGTATGTTGCTAAAAGAAACTTTCATATTCCTACTTTAAACGATGAGTTATTGCAAAATATCATCTATTGAATAGAAAAGTTGTCTATTCTCATTTACTTACAATAGTTGCAAGGGACCTTTTTTTATGTAGAAGTAAAGATCTAATACATCAAAAGAAAAAACTTACTCAAATAATTACAATATAAATACACCTAATAATTCTAATGAAGGAAAATATCACAAACATAAACCATTTTTTTTTTTTTTTTTTTTTTGTAAGAGACAATTTCATTGATGGTTGAAATTTACAAAAAGAATGTAATATCTATGATGTTTTCAAAAGGCCTTCCCAATTAACAATAAGGGAGGTATAACTATAATGTGACAAGCTGATTTGAAGGTATATTCCATGCCAACTTTTCAAATCGTAGTTTTGGAAGTCTCTTAGTACCTAATAATTTGCTTTGTTGTAGGAAGATAGAGAATACATATCAATCTTCTACTTTATAAAGTATTTTTCAACTTGGATATGTTTTGTCCTAATAAGGACTGGATTGTGAGCTATGGAGATGACTTATTGTCTCACTAAACACATATAGACGCCTTTCTTGACGAATTTCAATTCTTCTAGTAGTTTTTTTTTATTTATTTACCCAAATACCTTCATAAATGTCATGAGCTAAATCTCTGAATTCTTCTTCAGCCCTACTTCTAGCTACCACCCTTGTTTTTAACTTCGTCTGGCAACTAGATGCCCTCCAACAAAGGAGTAATAATTAGAAGTAGATCTTCTATCAGTGGTGCTACCTACCCCGTCAACACCACTATAAATTTCAACAATATAAGTGGTCATGTTCTTAAAAAGTCTGCCTTTTCTTGGGGTTCCTTTTAGATATCTTAAAATCCTGTAAACTTCCTCAAACTGGCCTCGTCTTTGGTATTTTTCCTTATCTTTTACTTTTTCCTCTATTGCAACTTGCAATTTTAAATTTGGTTCAATTGGAGTTTTTGTTGATCTACTACCAAGTAAACTTTTTTCTTCAAGCAAATCCATTATATATTTTCTTTATTGACAAGGATACCCTTTTTTACCTGAAATTTTTCATCACTAGGAAATACTTCAAAATTCTCATGTCTTTGATTTAGAATTCATTTGCTAGTTTTTCCTTCAAACTCCCTAGTCTAGCCTCATCATTACTTGTAAGAACTATATCATCAACATTCACAATTAGGATAACTATCTTGTCATTTCCAGCGTGTATAAAAAATGTATGATCTACTTGATTATGAAGAAAACTATAATTTGTAACAACTTCCCAAAGAACGTTTGAACCAGGTTCTAAGAGATTGTTTAAGGCCATATAGAGATTTCTTAAACCTGCATATTTTGTTAACTCCAAGATCCACTCCAAAACCTGATGATAAGCCATAAACACCTCCTCTTTAAGATCATTATTGAGAAATGCATTCTTGGCTTTTGAGCTTGATATTTCTCTATTTTAGTCTTCAAACTACTTAATCACCATTTAACTATTTTCCTACCATAGGTTCAAATAAGAACTCAATTTAAACTTGAAAGGTAACAAATTATAGAGAAGAATGTATCTATTCGAGGAGTGTAAACCTCATTTACCATCCCACCCTCTAGCCTTTCAGATTACTGGAGCATAAATCTTGTCTCTCATGTCTGGTATTTTTGTATTTTGGGACTGTTCTACCTAGATTACAAAATGGATTTAGCTAAAATTGCGTTGAGATTACCCTTTCCCTTGCGGAATCATTTGATATTGTTTCAGCATTTGCTCCTACATGTGGACTCAAGATAATAATTTTGACTCTCATCTAACTTCTTGACTATTAAGGAGTTAAAAGAGGAATAACATTACAAACACTTGAACTCTAGAACTTCTATTGCTTTGATACTATGTGAGTTGTTTGCATCTATAAGCTTAACCTCTTAGGTTTCGTTAAATTTTGGCCATTTTATATGTTCACAAAAGATTATCCAGGATTATAATTTTCCTATGCTTCTTCAGGTCAGGCATTTTAGATGTTTATAATTTTCAGGTCACACATATTCATTGCCCGCCCCCAGCATGGTTGTAAGTAAATTTAAACTTATTGAAGATATTCGTTATGTGAAGAATCAGGTACTTTTGTAACCCTGTTTCTTTTTGTTTGGAAAGAGTAGAAATGATTCCAACATGCCCACAGATCAATTATTGTTGAGAAAACCATCATGGCTGCCTACAGATTCTGTAAGTTATCTTAACCCATACTTCTATTTTGTTCCATCATTTTTTTGACTCAAGTAGAAACCTGGCGTTATGTATGAACATTTGCACGACCAAAGTAGTTCTGTTAATCTCTTCAATCATATAGGATAATGACAATATGTGGCCATCAATTTATCCTCGACTATTTGTAACCGTTTCTTCTTCTATTTGTTTCGTTGGCAACTTCCAACTTTCCAGATGTCTCATGTATGAGGTTTGAGTGGATCGTGAAAATAGTCCCAACACTTTAGTTTGTAGATCATGTGAAGAAAAGTCTATGCTATGCTATTAAAGTAAATTGCAAAGTCCAATAATTTTCTTATGTGCGAATTTTGATTTAGGAATTCTCTTGCATTTAGGCTCTTACTTGGTAGATGCTCAGTCAGAAATAATAATAATAATAATAGTAAAACTAAATAGAAAGGAGCTATCCAGTAAGCAAATCTCCCGTGCTGTACAAACAAGGACGTCTGTCTAAGCAATTGAAAGTTATATTGGCCTACCATAACCTGTTAATTTCTGGTTCATAGAAGATGAAAAGATGTTTTCGGTCTAGTAAATATTAGCGCGGAAGTTATTTAGTATAGTAACATACTGTGATGATATGCGGATTCGTAGCATGTGCAGCTGTTCATAGCGAGTTACTGGTAGTATACCTGGAGTTTTGTTCAGTCAAGTTCCTAATCAATTTTGCAATGGTATATTGTAGATCTATTCAGTTGGGTCTCCTTCTGATGAAGGCATTCATCTTCTGGATTTTCATCCCGACGTCCGCTCTCCCAGCCATGTGAACTTTAAGTAAGAATTTAATGAACAAACTTGTAGGTTTTGTAAGAATACAATACAAAATGGGCAGCTATAGACACCAATAGTTGGTGAAAGAAAAACAATAAAATGGCAATATACGTATCATTAATCCTTAACATTCTACGACTTTGAATCTATCAAATATCAACATTATGTTATAGAGAAGAGATTGATATTCTTTTGTGCTGTTTATTGTATCCTTTTTCATGTTCCAGTGATGAGATATATGGTGCTGGAGGAGAAAACAAAAGACGACAGAACAGGTTTGTGAAGTTGTCTGAAGGAGTTACTTCTTGTGCTGCTCACCCCCTCAATGGCACCATCATAGCTGGAACCAAGGTTTGTTTATATCTTATCTTTACTATTTATTGCAGTAGTAATTCATAAATAGCCCTTTCTCTTCGATGAAATCCTGATTTTTGGGAGGATTGGTTACAGAATTCATCTTTGATCATGATTTCCCAGAAGAACCGATCATGTTAGAAGCCAGAGTTCCCATTTGAGGCCGCTTTTAAGTTCAATGGAAAAAGTGGTAAAGGCCGTTTCTATCGAGTAATCAAAAAATGGCTTGGGAACTCAGGTGGGTTAGTGATGGTCCGTTGCTTTGCTTTTTATGCTCTTCCAAACACATTGTATATGAATATCATATCTATTAACACCAGATCATAACAAGTTTAGTGGTTTATTTTCTTGTGTTTTTTTAACACTTGTTCGTTATATCAATATGTTGTTTAGATCATGAACGAATCTAATATGAAGCTAATTTATGGTTGTTAAGTTTCAAGTAAGAATATGCATCATTTCTTATAAAGTATTGAGTCTAAAATCACTATTCGATAATATCATACTATCATACATATTAGGTCTTCGAGAATCTTTTGCTCAA

mRNA sequence

TGTAGGAGCAAGCGAATATCATTCCGAAGGAAATACACTCTATTGATCTCAACCCAGCTTGTCCTTATCAGTTGGCCTTTCATCTTGACGACGGATGGTCAGGCATTTTAGATGTTTATAATTTTCAGATCTATTCAGTTGGGTCTCCTTCTGATGAAGGCATTCATCTTCTGGATTTTCATCCCGACGTCCGCTCTCCCAGCCATGTGAACTTTAATGATGAGATATATGGTGCTGGAGGAGAAAACAAAAGACGACAGAACAGGTTTGTGAAGTTGTCTGAAGGAGTTACTTCTTGTGCTGCTCACCCCCTCAATGGCACCATCATAGCTGGAACCAAGAATTCATCTTTGATCATGATTTCCCAGAAGAACCGATCATGTTAGAAGCCAGAGTTCCCATTTGAGGCCGCTTTTAAGTTCAATGGAAAAAGTGGTAAAGGCCGTTTCTATCGAGTAATCAAAAAATGGCTTGGGAACTCAGGTGGGTTAGTGATGGTCCGTTGCTTTGCTTTTTATGCTCTTCCAAACACATTGTATATGAATATCATATCTATTAACACCAGATCATAACAAGTTTAGTGGTTTATTTTCTTGTGTTTTTTTAACACTTGTTCGTTATATCAATATGTTGTTTAGATCATGAACGAATCTAATATGAAGCTAATTTATGGTTGTTAAGTTTCAAGTAAGAATATGCATCATTTCTTATAAAGTATTGAGTCTAAAATCACTATTCGATAATATCATACTATCATACATATTAGGTCTTCGAGAATCTTTTGCTCAA

Coding sequence (CDS)

ATGGTTGTTAAGTTTCAAGTAAGAATATGCATCATTTCTTATAAAGTATTGAGTCTAAAATCACTATTCGATAATATCATACTATCATACATATTAGGTCTTCGAGAATCTTTTGCTCAA

Protein sequence

MVVKFQVRICIISYKVLSLKSLFDNIILSYILGLRESFAQ
Homology
[Close]
BLAST of Carg17981 vs. NCBI nr
Match: KAG7022076.1 (hypothetical protein SDJN02_15805, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 74.7 bits (182), Expect = 2.0e-10
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0 

Query: 1  MVVKFQVRICIISYKVLSLKSLFDNIILSYILGLRESFAQ 41
          MVVKFQVRICIISYKVLSLKSLFDNIILSYILGLRESFAQ
Sbjct: 1  MVVKFQVRICIISYKVLSLKSLFDNIILSYILGLRESFAQ 40

The following BLAST results are available for this feature:
BLAST of Carg17981 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7022076.12.0e-10100.00hypothetical protein SDJN02_15805, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg17981 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg17981 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg17981 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17981-RACarg17981-RAmRNA