Carg17977 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg17977
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Pentatricopeptide repeat-containing protein
Location	Carg_Chr11: 4122890 .. 4129731 (-)
RNA-Seq Expression	Carg17977
Synteny	Carg17977

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCAGATGAGGCAAATTCATGCCCAAATGGTTTCAACTGGCTTGATCTCAGATGGGTTTGCACTGAGTCGCCTTGTTGCGTTCTGTGCGATTTCTGAGTGGCGAAATCTTGACTATTGTGACAAACTTCTCGACAATGCTCCCAACCCGAATATTTTTTCTTGGAATGTGGCGATTAGGGGTTATTTAGAGAGTGAGAATCCCAGAAATGCTGTTTTTTTGTACAGGAAAATGCTGAGAAAAGGTGGGTCTATTCCTGATAATTATTCTTATCCTCTGTTGTTTAAAGCTTGTGCTGGTTTGTCGTTGAGTTTCACGGCTAATGAGATTCTTGGGCATGTAGTACATTTGGGTTTTTATTCGGATTTGTTTGTGCACAATGCGATTATTCATGTACTGGTTTCTTGTGGAGAATTGTTGGCTGCACGTAAGGTGTTCGACGAAAGTTGCGTGAGAGATTTGGTTTCTTGGAACTCGATGATCAATGGGTATGTTAGGTGTGGGTTGGCGGACGAGGCATTGAATCTTTATTACAAGATGGAGGATCTGAAAGTGAAGCCAGATGAGGTCACAATGATTGGACTCGTTTCAGCTTCTGCCCAGCTTGAAAATGTAGCTCTTGGAAGAAAGCTTCATCAATTCATTGAAGAAATGGTTTGAATTTGACCATTCCACTTGTCAATGCATTGATGGATATGTACATTAAGTGTAAGAATATTGAGGCTGCAGAAACACTATTTGAGAACATGACAAAGAAAACCATTGTTTCATGGACTACAATGGTTGTTGGATATGCCAAATGTGGGATGTTGGAAAGTGCTGTGAGGCTGTTCAATGAGATGCCAGAGAAGGATGTCGTGCCATGGAATGCTTTAATTGGTGGCTTTGTTCAAGCCAAGCGTAGTAAGGAGGCTTTGGCTCTGTTTCATGAAATGCAAGCCAGCAATGTTGACCCAGATGAGGTTACTGTCGTTAGTTGTTTATCTGCATGCTCTCAACTTGGAGCACTAGATGTTGGAATTTGGATGCATCGTTTCGTTGATAAACAAAATCTTACTATGAACGTTGCCTTAGGAACTGCTCTAGTTGACATGTATGCTAAGTGTGGGAACATAAAAAAGGCTCTACAGGTTTTTGAGGAGATGCCAGGAAGAAACTCATTGACATGGACAGCTATAATATGTGGTCTAGCACTTCATGGACAAGCACATGCTGCCATATCTTACTTCTCGGAGATGGTTAGCATTGGACTTGTGCCTGATGAGATCACCTTCATTGGGGTCTTATCGGCTTGTTGTCACGGTGGATTGGTTGATCAAGGTCGACACTATTTTTATCAAATGAGCTCCAAATATGGTATCTGCCCAAAACTTAAGCATTATTCTTGCATGGTGGACCTTCTAGGTAGGGCTGGCTTCTTGGAAGAGGCAGAAGAGATTATTAGGAGCATGCCTTTTGAGGCAGATGCCGTAGTGTGGGGAGCATTGTTCTTTGGCAGCCGTATGCATGGAAATGTTCATATAGGAGAACGAGCGGCTTTTAAGCTTCTTGAGTTGGATCCTCATGACAGTGGAATTTATGTTTTGCTTGCAAATATGTATGGTGATGCTAATATGTGGGAGAAGGCAAGGAAGGTAAGAAAGATGATGGAACAAAGAGGGGTCGAGAAAACACCTGGTTGTAGTTCAATTGAGATTAATGGTTTAGTTTATGAGTTTATAATTCGTGATAAGTCACATCCTCGATCGGAGAAAATTTACGAGTGTTTAACTTGGTTAACAAGACAGCTTGAACTTGTTGAGGATGAAACATCTTCATTGAAAGAATTTTGAGGTGGTCATATTTGAGTTGACAAGGAGTAGGGCTCTAAAATATGCTCGACCAAGCTCCCTCTCCCACAGCTAGCCTCGAGTCGGTGAAGTCTTTCGATGATTAGTGAGAGATCAACTCTGAATATATTACAAAGAGTGGGGCTCTCCAACACCTCGGTTCAAAAAAGAATATTTAATAAAAGAATGCTTTCTAGTCTAGAAGTGATTCTGAAGAGCCTTTGTTACCTTGAGATGATGAAGGTCTACCTCTCAAAGCCCACAAAGCTTCTGCAGAAGGATAATCACTTGAATCTTCTGAATGGTAAGAATTTGTTCTGTACTGTAAGCAATGAGCTCCTTTCAAGCCTTTTCAGTTTCTTGACTTTTTGCATTTTCTTGTCCAGTTATAGTTGAAGCATGGCATCTTGGAAAAAGCTTCCAATAATTGAAATGAAAGCTAAACATGTCCATATTCAGCTCATTTATTCTTGCCTCACCCATTCTATAACAAGTCACCAGCGGGTTTTTGTCGATAAGCTTCATTGAAGCATATGTAATGGTGGTTGGTGGGTATGATGATTCAGGTTTATGTGCTCAACGCTAGTAGCATCTCGATTTTTTAAACCATTTTATACGTGTAAACCATGTCCCTTTGATTCCTTTGGATGAAGCAATTTTGAGATGGAGGTAGAACATAAATAGGTTTAAATCTTATTTTGGTCTCAAAACGTTCATGTACATCTTATTTTGTGCTCAAATCGTTCATGTCCTCGAACATTCAAATGTTATCTTCTAAGTCTAGAGATGAAAATAGAATATTTGAAGTTAAATAAAAGACTAAATAAAACTATTAAAAGTTTTAACACCAAAATAAGATTTAAACCATATATTAAAGTTTAATCTATAGTATCATATGGTTATGGTCGTGTGGGGAACTCATTATGTTGACTTCGTGTGCTGCGTCACATTGTGACCACGAAACCCGAAATTGTTAAGGACCTTATTTGCTCTCCTCTGACTTTTGTCTTATGTACATTATCTGTTTGATCATCAAAGTGATTTTATTCTCCTTCCCCAGATTTTGGAACTGGCCTGCCAAGTGTTAAAGTGCCCACAGGAAGGAAAGGCTTTTTAGAATCATGTTCTGAAAAATGACCTTGTGGTAGGGATCGCATCAAAAGAAATAAAGCTCAATCCATGTGTTCAGTGTAACTGGGTCAGAGGGAAGACACAAAGATTGCCATCGACAAAATTGGCCCGACACTGACATTGAGAGGTGAAAGACGAGGAGCGAATGGATATTAGGTATTGTGCATATCGACTTTTGTGCAATACTTAGAGTATCACATTAGTGGGGAACGTGTGAAGTCTCATCTGAGATATCTCAGGAAGAAGATGAAAAAATCGTGGTCATCTCATAACCCATTGACATGAGGTATGTTATTTCTTGCAAATCAAGTGTCATGATTCATGGAACCATATATTCCAGGTTGTTTACGTGATTTTTCATAATATATTTACAGTCCCTTTTTGTGATACATGTTACTGATGATCAAAGTAGAAGTCGTTTTGTATTATATTTAAGGGATTTCTGTGTTAGGAGTGAAGAAATTCTTTTATGTTCCATTAAGAAAGAACGACAATGAACATAGTTGTTTGAATTTTAGAAAAGTTAAAGGTTAGGGTTGAGATGGAGATTAGGATGGAGATGTGTTGTACACTATAACGATTAAAAAGGTGGAGGATAAGTCTAGGGTGAAGATCCTATTTGGAAAAGGAATGCAGAATATATAATCAATTAAAGAAATTCAAAGTCAATGCCAGAGTTGAGGGTTGGGACCTCATAATTATAAAGAGTTTCAAGAACAAGGACACAGAATATCTAATAAAAGTTCACAAGTAACTTTTTCTTAAAATAAAGTTGGGACTGAGGTTGGAGAGAGTTAGAGAAGTGTAACATGTAAGAATAATTACAAAACATTTAACAGTCAAGATAAGTATTGGTGTAATAGCCCGAGCCCGTCGCTAGTAGATATTGTCTTTTTTTGGGCCATTTTCCTTTGGGTTTCTCCTCAAGGTTTTTAAAACGCGTCTTTTAGGGAAAGGTTTCTACACCCTTATAAATAATGTTTCGTTCTCCTCTCCAACCGATGTAGGATTTCACAATCCACCCCTCTTTGGGCCCAGCATCCTTGCTAGCACTCGTTCCCTTCTCCAATCGATGTGGGACCCCCCCCTTTGGGGCCCAGCGTTCTTGCTGGCACTCGTTCCCTTCTCCAATCGATGTGGGACCCCAATCCGCCCCCCTTCGAGGCCTAGCATCCTTGTTGGCACTCGTTCCCTTCTCCAATCGATGTGGGACTCCCCCCCCCCCAATCCGCTCCCCTTCGGGGCCCAGTGTCCTTGTTGACCACCCCACTTCGAGGCTTAGCTTCCTCGCTAGCATATCGCCCGGTGTCTGACTTTGATATCATTTGTAACGGCTCAAGTCCACCACTAGCAGATATTGTCCTATTTGAGCTTTCCCTTTTGGACTTCCCCTCAAGCTTTTTAAAACACGTCTGCTAGGGAGAGGTTTCCACACCCTTATAAAGAATGCGTCGTTCTCCTCTCCACCGATGTGGGATCTTATAATTGGGATCTAAGACACAAAACAAGCTATAAACTAACAACCAAAAAATTTAGGATCAAAGTCAAGGATATGTTATTCATTGTAGTAATTTTTAGTAAAGCTTAGGCTTGAATAAAGATTGAGTTTAAAGTGGGCGAGTACCTCGTGCCCTTATTTCCTACCCATCCACCTATCTCACTTTCAAGTACATAATACTATTTTACTAAAGGTCATTCAAACTCTTTGAAGAAGACACCCTCCAATGCTTGATCGAGTACTCACCAAGTTCCTAAAGTACACTAACTTATCCCTCCGTCGAAAGACTAACGCACTCCTCGAAATATGAATGAGGCCTCGATGTGGATTACTTTAGTGTTGTTGTACAAGATAGTTAGCCAAACTACTTCCTATCTCTTAACCCAGAAAACATTTCAAATGTAGATCTTCAGATTTCGAGTGAAGTCAATAAAATTAGATCACCGAACGAGTAATTGTCACAACCACTATAGTTTCCAAAGGATTGAAGCATTGAAAGGTGAAAAACTGTGCCATGATTGATTTGTTAAAGGGAAAAGAAATAGTAATGAGAGAAGAGAGTGGATGTGCGATGCAGTTGTAGCAGATTAGGGAACAGAAGGAATAAAGAATAATATTCAGTGGTTGTCCTTTGCCTCCGCCTCAGGGTTTGGTCTTTCTCTTTCTGTTCCAGTTTCACATGTCTAAGTCTCTCAACTCTGACTGAAAAAGCAGTGTCTTATGTCCCATTTGCTAGGAGTTTTGTGATTGCTTTCTCCCATGCCAGACACCATCATCCAAATTGATTGGATTGACACCCATAAGCACACTCAATTGCCCAACTAGTATTGAATCATCATTCTATTATTATTATTTTCCGCTGTTCATTAACTTTTCTGGTCCTCCTAGATTTAGCTCGTGTTTCTAAATGTTTAGCGATTTAGTCTATGAACTTTGGTACGTAACCATTTCGTCTGGGTAGTTTAATCTTCGTAGTGATTTAGTTTATGTTGCAAATACTGGTAATGTCTAGCGGAGTCCCTTGTGTATATAGATTGATAAGTTGTCTAGAGGTCGAGGCCCTGACATTTAAAGTTTTCGTTGTGTGTTAGATCCCACATCGGTTGGGGAGGAGAACGAAACACCGTTTATAAGGGTGTGAAAACCTCTCCCTGACAGACGCGTTTCAAAAACCTTGAGGGGAAGTCCGAAGGAGAAAGTCCAAAGAGGACAATATCTATACTAGCGGTGGGTTTGAACTGTAACAAATGGTATCAGAGCCACGCACCGAGCGATGTGCCTGCGAGGAGACTATTCTCCGAAGGGGAGTAGACACGAGGCAGTGTGCCAGTAAGGACGCTGGGCCTCAAAGGGGGGGTGGATCGTTAGATCCCACATCGGTTGGAGAGGAGAACAAAACGCCTTTATAAGGGTATGGAAACCTCTCCCTAGCAAACACGTTTTAAAAACCTTGAGGGGAAGCCCGAAAAGGAAAGCCCCCAAAGAGGACAATATCTGCTAGCGATGGGCTTGGGCCGTTACAAATAGTATCAGAGCCAGACACCGGGCGATATGCCAGCGAGGAGGTTGTCCCCCAAAGGAGGGTAGTAGACACAAGGCGGTGTGCTAGTAAGGACGCTAGGCCTCGAAGGGGGGTGGATTGTTAGATCTCACATCGGTTGGGGAGGAAAACGAAACGCCCTTTATAAGGGTGTGAAAATCTTTTCCTAGCATACGCATTTTAAAAACCTTGAGAGGAAGCTCGAAAGGGAAAAGCTCAAAGAAGACAATATCTGCTAACGGTGGGCCTGAGCCATTACATTGTCATTGCCTACAAAGAGTTCCCCACAAGCCAAATTTAAAACGTGAAGAGCTCGATATGAACTTTCTAAACCATCTTGAAAAGCACCAAAAACATCAAGAACTAAAGCATAGACTTACTTTTATTTCACTCAACCACTTGGCCTTTTTAGATATACCCTTTACTTTAATCTCTATTTCAATATGATATCCATATTCTTTTTAGTTACTTGTAGAATTTGGGTCCATATTTTAAAGCATTTGCCTTGATTCAAAAGCAGAAAAGAGGACCAATGAGGTAATGAGCATTAAGAATTGCTTTGAGGTATGCAAGCATATACTTATTCCAATGTGTCTATCAACCTATGTTCATTCATTATGTCTTATGGAATCCAATGCATCGATACGTCCTAGAGATCCCATATACAACTAGGTCACGACGCTTAATGTCAACTTATAGTCAAAACTTAGCTTTTATCTACATAGTACGTTGTGATCATTAGAGCTCGTTTCGCACCTTAGTCTGCTAAGATTCATTAAGATGACAAAATCACTGCACTTCGTTCAGGTCGTTTGATAATCCATTTTTGAACGAAGCATAA

mRNA sequence

ATGGCGCAGATGAGGCAAATTCATGCCCAAATGGTTTCAACTGGCTTGATCTCAGATGGGTTTGCACTGAGTCGCCTTGTTGCGTTCTGTGCGATTTCTGAGTGGCGAAATCTTGACTATTGTGACAAACTTCTCGACAATGCTCCCAACCCGAATATTTTTTCTTGGAATGTGGCGATTAGGGGTTATTTAGAGAGTGAGAATCCCAGAAATGCTGTTTTTTTGTACAGGAAAATGCTGAGAAAAGGTGGGTCTATTCCTGATAATTATTCTTATCCTCTGTTGTTTAAAGCTTGTGCTGGTTTGTCGTTGAGTTTCACGGCTAATGAGATTCTTGGGCATGTAGTACATTTGGGTTTTTATTCGGATTTGTTTGTGCACAATGCGATTATTCATGTACTGGTTTCTTGTGGAGAATTGTTGGCTGCACGTAAGGTGTTCGACGAAAGTTGCGTGAGAGATTTGGTTTCTTGGAACTCGATGATCAATGGGTATGTTAGGTGTGGGTTGGCGGACGAGGCATTGAATCTTTATTACAAGATGGAGGATCTGAAAGTGAAGCCAGATGAGGTCACAATGATTGGACTCGTTTCAGCTTCTGCCCAGCTTGAAAATGTAGCTCTTGGAAGAAAGCTTCATCAATTCATTGAAGAAATGAATATTGAGGCTGCAGAAACACTATTTGAGAACATGACAAAGAAAACCATTGTTTCATGGACTACAATGGTTGTTGGATATGCCAAATGTGGGATGTTGGAAAGTGCTGTGAGGCTGTTCAATGAGATGCCAGAGAAGGATGTCGTGCCATGGAATGCTTTAATTGGTGGCTTTGTTCAAGCCAAGCGTAGTAAGGAGGCTTTGGCTCTGTTTCATGAAATGCAAGCCAGCAATGTTGACCCAGATGAGGTTACTGTCGTTAGTTGTTTATCTGCATGCTCTCAACTTGGAGCACTAGATGTTGGAATTTGGATGCATCGTTTCGTTGATAAACAAAATCTTACTATGAACGTTGCCTTAGGAACTGCTCTAGTTGACATGTATGCTAAGTGTGGGAACATAAAAAAGGCTCTACAGAATTTGGGTCCATATTTTAAAGCATTTGCCTTGATTCAAAAGCAGAAAAGAGGACCAATGAGGTCGTTTGATAATCCATTTTTGAACGAAGCATAA

Coding sequence (CDS)

ATGGCGCAGATGAGGCAAATTCATGCCCAAATGGTTTCAACTGGCTTGATCTCAGATGGGTTTGCACTGAGTCGCCTTGTTGCGTTCTGTGCGATTTCTGAGTGGCGAAATCTTGACTATTGTGACAAACTTCTCGACAATGCTCCCAACCCGAATATTTTTTCTTGGAATGTGGCGATTAGGGGTTATTTAGAGAGTGAGAATCCCAGAAATGCTGTTTTTTTGTACAGGAAAATGCTGAGAAAAGGTGGGTCTATTCCTGATAATTATTCTTATCCTCTGTTGTTTAAAGCTTGTGCTGGTTTGTCGTTGAGTTTCACGGCTAATGAGATTCTTGGGCATGTAGTACATTTGGGTTTTTATTCGGATTTGTTTGTGCACAATGCGATTATTCATGTACTGGTTTCTTGTGGAGAATTGTTGGCTGCACGTAAGGTGTTCGACGAAAGTTGCGTGAGAGATTTGGTTTCTTGGAACTCGATGATCAATGGGTATGTTAGGTGTGGGTTGGCGGACGAGGCATTGAATCTTTATTACAAGATGGAGGATCTGAAAGTGAAGCCAGATGAGGTCACAATGATTGGACTCGTTTCAGCTTCTGCCCAGCTTGAAAATGTAGCTCTTGGAAGAAAGCTTCATCAATTCATTGAAGAAATGAATATTGAGGCTGCAGAAACACTATTTGAGAACATGACAAAGAAAACCATTGTTTCATGGACTACAATGGTTGTTGGATATGCCAAATGTGGGATGTTGGAAAGTGCTGTGAGGCTGTTCAATGAGATGCCAGAGAAGGATGTCGTGCCATGGAATGCTTTAATTGGTGGCTTTGTTCAAGCCAAGCGTAGTAAGGAGGCTTTGGCTCTGTTTCATGAAATGCAAGCCAGCAATGTTGACCCAGATGAGGTTACTGTCGTTAGTTGTTTATCTGCATGCTCTCAACTTGGAGCACTAGATGTTGGAATTTGGATGCATCGTTTCGTTGATAAACAAAATCTTACTATGAACGTTGCCTTAGGAACTGCTCTAGTTGACATGTATGCTAAGTGTGGGAACATAAAAAAGGCTCTACAGAATTTGGGTCCATATTTTAAAGCATTTGCCTTGATTCAAAAGCAGAAAAGAGGACCAATGAGGTCGTTTGATAATCCATTTTTGAACGAAGCATAA

Protein sequence

MAQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNIFSWNVAIRGYLESENPRNAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGHVVHLGFYSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSMINGYVRCGLADEALNLYYKMEDLKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEMNIEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALIGGFVQAKRSKEALALFHEMQASNVDPDEVTVVSCLSACSQLGALDVGIWMHRFVDKQNLTMNVALGTALVDMYAKCGNIKKALQNLGPYFKAFALIQKQKRGPMRSFDNPFLNEA

Homology

[Close]

BLAST of Carg17977 vs. NCBI nr
Match: KAG7022080.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 789.6 bits (2038), Expect = 1.2e-224
Identity = 389/389 (100.00%), Postives = 389/389 (100.00%), Query Frame = 0


Query: 1   MAQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNIFSWNVAI 60
           MAQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNIFSWNVAI
Sbjct: 1   MAQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNIFSWNVAI 60

Query: 61  RGYLESENPRNAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGHVVHLGF 120
           RGYLESENPRNAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGHVVHLGF
Sbjct: 61  RGYLESENPRNAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGHVVHLGF 120

Query: 121 YSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSMINGYVRCGLADEALNLYYK 180
           YSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSMINGYVRCGLADEALNLYYK
Sbjct: 121 YSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSMINGYVRCGLADEALNLYYK 180

Query: 181 MEDLKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEMNIEAAETLFENMTKKTIVSWT 240
           MEDLKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEMNIEAAETLFENMTKKTIVSWT
Sbjct: 181 MEDLKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEMNIEAAETLFENMTKKTIVSWT 240

Query: 241 TMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALIGGFVQAKRSKEALALFHEMQASNVDP 300
           TMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALIGGFVQAKRSKEALALFHEMQASNVDP
Sbjct: 241 TMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALIGGFVQAKRSKEALALFHEMQASNVDP 300

Query: 301 DEVTVVSCLSACSQLGALDVGIWMHRFVDKQNLTMNVALGTALVDMYAKCGNIKKALQNL 360
           DEVTVVSCLSACSQLGALDVGIWMHRFVDKQNLTMNVALGTALVDMYAKCGNIKKALQNL
Sbjct: 301 DEVTVVSCLSACSQLGALDVGIWMHRFVDKQNLTMNVALGTALVDMYAKCGNIKKALQNL 360

Query: 361 GPYFKAFALIQKQKRGPMRSFDNPFLNEA 390
           GPYFKAFALIQKQKRGPMRSFDNPFLNEA
Sbjct: 361 GPYFKAFALIQKQKRGPMRSFDNPFLNEA 389

[Close]

BLAST of Carg17977 vs. NCBI nr
Match: XP_022927674.1 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucurbita moschata] >XP_022927681.1 pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucurbita moschata] >XP_022927688.1 pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucurbita moschata] >XP_022927696.1 pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucurbita moschata] >XP_022927700.1 pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucurbita moschata])

HSP 1 Score: 709.9 bits (1831), Expect = 1.2e-200
Identity = 356/378 (94.18%), Postives = 357/378 (94.44%), Query Frame = 0


Query: 1   MAQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNIFSWNVAI 60
           MAQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNIFSWNVAI
Sbjct: 67  MAQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNIFSWNVAI 126

Query: 61  RGYLESENPRNAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGHVVHLGF 120
           RGYLESENPRNAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGHVVHLGF
Sbjct: 127 RGYLESENPRNAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGHVVHLGF 186

Query: 121 YSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSMINGYVRCGLADEALNLYYK 180
           YSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSMINGYVRCGLADEALNLYYK
Sbjct: 187 YSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSMINGYVRCGLADEALNLYYK 246

Query: 181 MEDLKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEM--------------------N 240
           MEDLKVKPDEVTMIG+VSASAQLENVALGRKLHQFIEEM                    N
Sbjct: 247 MEDLKVKPDEVTMIGVVSASAQLENVALGRKLHQFIEEMGLNLTIPLVNALMDMYIKCKN 306

Query: 241 IEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALIGGFVQA 300
           IEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALIGGFVQA
Sbjct: 307 IEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALIGGFVQA 366

Query: 301 KRSKEALALFHEMQASNVDPDEVTVVSCLSACSQLGALDVGIWMHRFVDKQNLTMNVALG 359
           KRSKEAL LFHEMQASNVDPDEVTVVSCLSACSQLGALDVGIWMHRFVDKQNLTMNVALG
Sbjct: 367 KRSKEALTLFHEMQASNVDPDEVTVVSCLSACSQLGALDVGIWMHRFVDKQNLTMNVALG 426

[Close]

BLAST of Carg17977 vs. NCBI nr
Match: KAG6588182.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 705.3 bits (1819), Expect = 2.9e-199
Identity = 353/378 (93.39%), Postives = 356/378 (94.18%), Query Frame = 0


Query: 1   MAQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNIFSWNVAI 60
           M QMR+IHAQMV TGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPN+FSWNVAI
Sbjct: 67  MTQMRKIHAQMVLTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNVFSWNVAI 126

Query: 61  RGYLESENPRNAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGHVVHLGF 120
           RGYLESENPRNAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGHVVHLGF
Sbjct: 127 RGYLESENPRNAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGHVVHLGF 186

Query: 121 YSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSMINGYVRCGLADEALNLYYK 180
           YSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSMINGYVRCGLADEALNLYYK
Sbjct: 187 YSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSMINGYVRCGLADEALNLYYK 246

Query: 181 MEDLKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEM--------------------N 240
           MEDLKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEE+                    N
Sbjct: 247 MEDLKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEIGLNLTIPLVNALMDMYIKCKN 306

Query: 241 IEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALIGGFVQA 300
           IEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALIGGFVQA
Sbjct: 307 IEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALIGGFVQA 366

Query: 301 KRSKEALALFHEMQASNVDPDEVTVVSCLSACSQLGALDVGIWMHRFVDKQNLTMNVALG 359
           KRSKEALALFHEMQASNVDPDEVTVVSCLSACSQLGALDVGIWMHRFVDKQNLTMNVALG
Sbjct: 367 KRSKEALALFHEMQASNVDPDEVTVVSCLSACSQLGALDVGIWMHRFVDKQNLTMNVALG 426

[Close]

BLAST of Carg17977 vs. NCBI nr
Match: XP_023531862.1 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 698.7 bits (1802), Expect = 2.8e-197
Identity = 351/378 (92.86%), Postives = 354/378 (93.65%), Query Frame = 0


Query: 1   MAQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNIFSWNVAI 60
           M QMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPN+FSWNVAI
Sbjct: 67  MTQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNVFSWNVAI 126

Query: 61  RGYLESENPRNAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGHVVHLGF 120
           RGYLESENPR AVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGHVVHLGF
Sbjct: 127 RGYLESENPRYAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGHVVHLGF 186

Query: 121 YSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSMINGYVRCGLADEALNLYYK 180
            SDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNS+INGYVRCGLADEALNLYYK
Sbjct: 187 DSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSIINGYVRCGLADEALNLYYK 246

Query: 181 MEDLKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEM--------------------N 240
           ME+LKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEM                    N
Sbjct: 247 MEELKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEMGLNLTIPLVNALMDMYIKCKN 306

Query: 241 IEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALIGGFVQA 300
           IEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALIGGFVQA
Sbjct: 307 IEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALIGGFVQA 366

Query: 301 KRSKEALALFHEMQASNVDPDEVTVVSCLSACSQLGALDVGIWMHRFVDKQNLTMNVALG 359
           KRSKEALALFHEMQASNVDPDEVTVVSCLSACSQLGALDVGIWMH FVDKQNLTMNVALG
Sbjct: 367 KRSKEALALFHEMQASNVDPDEVTVVSCLSACSQLGALDVGIWMHHFVDKQNLTMNVALG 426

[Close]

BLAST of Carg17977 vs. NCBI nr
Match: XP_022966942.1 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucurbita maxima] >XP_022966951.1 pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucurbita maxima] >XP_022966960.1 pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucurbita maxima])

HSP 1 Score: 693.3 bits (1788), Expect = 1.2e-195
Identity = 348/378 (92.06%), Postives = 351/378 (92.86%), Query Frame = 0


Query: 1   MAQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNIFSWNVAI 60
           M QMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAP+PN+FSWNVAI
Sbjct: 67  MTQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPSPNVFSWNVAI 126

Query: 61  RGYLESENPRNAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGHVVHLGF 120
           RGYLESENPRNAV LYRKMLRKGGS PDNYSYPLLFKACAGLSLSFTANEILGHVV LG 
Sbjct: 127 RGYLESENPRNAVLLYRKMLRKGGSTPDNYSYPLLFKACAGLSLSFTANEILGHVVQLGL 186

Query: 121 YSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSMINGYVRCGLADEALNLYYK 180
           YSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSMINGYVRCGLADEALNLYYK
Sbjct: 187 YSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSMINGYVRCGLADEALNLYYK 246

Query: 181 MEDLKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEM--------------------N 240
           MEDLKVKPDEVTMIGLVSASAQLENVALGRKLHQF EEM                    N
Sbjct: 247 MEDLKVKPDEVTMIGLVSASAQLENVALGRKLHQFTEEMGLNLTIPLVNALMDMYIKCKN 306

Query: 241 IEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALIGGFVQA 300
           IEAA+TLFENMTKKTIVSWTTMVVGYAKCGMLESAV LFNEMPEKDVVPWNALIGGFVQA
Sbjct: 307 IEAAKTLFENMTKKTIVSWTTMVVGYAKCGMLESAVMLFNEMPEKDVVPWNALIGGFVQA 366

Query: 301 KRSKEALALFHEMQASNVDPDEVTVVSCLSACSQLGALDVGIWMHRFVDKQNLTMNVALG 359
           KRSKEALALFHEMQASNVDPDEVTVVSCLSACSQLGALDVGIWMHRFVDKQNLTMNVALG
Sbjct: 367 KRSKEALALFHEMQASNVDPDEVTVVSCLSACSQLGALDVGIWMHRFVDKQNLTMNVALG 426

[Close]

BLAST of Carg17977 vs. ExPASy Swiss-Prot
Match: Q9SJZ3 (Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E28 PE=2 SV=1)

HSP 1 Score: 421.0 bits (1081), Expect = 1.5e-116
Identity = 209/379 (55.15%), Postives = 276/379 (72.82%), Query Frame = 0


Query: 1   MAQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNIFSWNVAI 60
           +  ++QI AQM+  GLI D FA SRL+AFCA+SE R LDY  K+L    NPNIFSWNV I
Sbjct: 66  LLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENPNIFSWNVTI 125

Query: 61  RGYLESENPRNAVFLYRKMLRKG--GSIPDNYSYPLLFKACAGLSLSFTANEILGHVVHL 120
           RG+ ESENP+ +  LY++MLR G   S PD+++YP+LFK CA L LS   + ILGHV+ L
Sbjct: 126 RGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKL 185

Query: 121 GFYSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSMINGYVRCGLADEALNLY 180
                  VHNA IH+  SCG++  ARKVFDES VRDLVSWN +INGY + G A++A+ +Y
Sbjct: 186 RLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVY 245

Query: 181 YKMEDLKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEM------------------- 240
             ME   VKPD+VTMIGLVS+ + L ++  G++ +++++E                    
Sbjct: 246 KLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKC 305

Query: 241 -NIEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALIGGFV 300
            +I  A  +F+N+ K+TIVSWTTM+ GYA+CG+L+ + +LF++M EKDVV WNA+IGG V
Sbjct: 306 GDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSV 365

Query: 301 QAKRSKEALALFHEMQASNVDPDEVTVVSCLSACSQLGALDVGIWMHRFVDKQNLTMNVA 358
           QAKR ++ALALF EMQ SN  PDE+T++ CLSACSQLGALDVGIW+HR+++K +L++NVA
Sbjct: 366 QAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVA 425

[Close]

BLAST of Carg17977 vs. ExPASy Swiss-Prot
Match: O82380 (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 4.6e-78
Identity = 149/377 (39.52%), Postives = 229/377 (60.74%), Query Frame = 0


Query: 1   MAQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNIFSWNVAI 60
           + Q++Q H  M+ TG  SD ++ S+L A  A+S + +L+Y  K+ D  P PN F+WN  I
Sbjct: 43  LRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLI 102

Query: 61  RGYLESENPRNAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGHVVHLGF 120
           R Y    +P  +++ +  M+ +    P+ Y++P L KA A +S       + G  V    
Sbjct: 103 RAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAV 162

Query: 121 YSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSMINGYVRCGLADEALNLYYK 180
            SD+FV N++IH   SCG+L +A KVF     +D+VSWNSMING+V+ G  D+AL L+ K
Sbjct: 163 GSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKK 222

Query: 181 MEDLKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEM--------------------N 240
           ME   VK   VTM+G++SA A++ N+  GR++  +IEE                     +
Sbjct: 223 MESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGS 282

Query: 241 IEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALIGGFVQA 300
           IE A+ LF+ M +K  V+WTTM+ GYA     E+A  + N MP+KD+V WNALI  + Q 
Sbjct: 283 IEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQN 342

Query: 301 KRSKEALALFHEMQ-ASNVDPDEVTVVSCLSACSQLGALDVGIWMHRFVDKQNLTMNVAL 357
            +  EAL +FHE+Q   N+  +++T+VS LSAC+Q+GAL++G W+H ++ K  + MN  +
Sbjct: 343 GKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHV 402

[Close]

BLAST of Carg17977 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 9.6e-68
Identity = 148/396 (37.37%), Postives = 218/396 (55.05%), Query Frame = 0


Query: 1   MAQMRQIHAQMVSTGLISDGFALSRLVAFCAIS-EWRNLDYCDKLLDNAPNPNIFSWNVA 60
           +  +R IHAQM+  GL +  +ALS+L+ FC +S  +  L Y   +      PN+  WN  
Sbjct: 46  LQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTM 105

Query: 61  IRGYLESENPRNAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGHVVHLG 120
            RG+  S +P +A+ LY  M+   G +P++Y++P + K+CA         +I GHV+ LG
Sbjct: 106 FRGHALSSDPVSALKLYVCMISL-GLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLG 165

Query: 121 FYSDLFVHNAIIHVLVSCGELLAARKVFDES----------------------------- 180
              DL+VH ++I + V  G L  A KVFD+S                             
Sbjct: 166 CDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFD 225

Query: 181 --CVRDLVSWNSMINGYVRCGLADEALNLYYKMEDLKVKPDEVTMIGLVSASAQLENVAL 240
              V+D+VSWN+MI+GY   G   EAL L+  M    V+PDE TM+ +VSA AQ  ++ L
Sbjct: 226 EIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIEL 285

Query: 241 GRKLHQFIEE----MNIEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPE 300
           GR++H +I++     N++    L +                Y+KCG LE+A  LF  +P 
Sbjct: 286 GRQVHLWIDDHGFGSNLKIVNALIDL---------------YSKCGELETACGLFERLPY 345

Query: 301 KDVVPWNALIGGFVQAKRSKEALALFHEMQASNVDPDEVTVVSCLSACSQLGALDVGIWM 359
           KDV+ WN LIGG+      KEAL LF EM  S   P++VT++S L AC+ LGA+D+G W+
Sbjct: 346 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWI 405

[Close]

BLAST of Carg17977 vs. ExPASy Swiss-Prot
Match: Q9LTV8 (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H43 PE=2 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.6e-59
Identity = 121/357 (33.89%), Postives = 215/357 (60.22%), Query Frame = 0


Query: 2   AQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNIFSWNVAIR 61
           AQ++QIHA+++  GL   GF +++L+   A S + ++ +  ++ D+ P P IF WN  IR
Sbjct: 35  AQLKQIHARLLVLGLQFSGFLITKLIH--ASSSFGDITFARQVFDDLPRPQIFPWNAIIR 94

Query: 62  GYLESENPRNAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGHVVHLGFY 121
           GY  + + ++A+ +Y  M     S PD++++P L KAC+GLS       +   V  LGF 
Sbjct: 95  GYSRNNHFQDALLMYSNMQLARVS-PDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFD 154

Query: 122 SDLFVHNAIIHVLVSCGELLAARKVFDESCV--RDLVSWNSMINGYVRCGLADEALNLYY 181
           +D+FV N +I +   C  L +AR VF+   +  R +VSW ++++ Y + G   EAL ++ 
Sbjct: 155 ADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFS 214

Query: 182 KMEDLKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEMNIEAAETLFENMTKKTIVSW 241
           +M  + VKPD V ++ +++A   L+++  GR +H  + +M +E    L        ++S 
Sbjct: 215 QMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDL--------LISL 274

Query: 242 TTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALIGGFVQAKRSKEALALFHEMQASNVD 301
            TM   YAKCG + +A  LF++M   +++ WNA+I G+ +   ++EA+ +FHEM   +V 
Sbjct: 275 NTM---YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVR 334

Query: 302 PDEVTVVSCLSACSQLGALDVGIWMHRFVDKQNLTMNVALGTALVDMYAKCGNIKKA 357
           PD +++ S +SAC+Q+G+L+    M+ +V + +   +V + +AL+DM+AKCG+++ A
Sbjct: 335 PDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGA 377

[Close]

BLAST of Carg17977 vs. ExPASy Swiss-Prot
Match: Q9LSB8 (Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E51 PE=3 SV=2)

HSP 1 Score: 227.6 bits (579), Expect = 2.4e-58
Identity = 122/376 (32.45%), Postives = 212/376 (56.38%), Query Frame = 0


Query: 3   QMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNIFSWNVAIRG 62
           Q +Q+H+Q ++ G+  +     +L  F       ++ Y  KL    P P++  WN  I+G
Sbjct: 49  QFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEPDVVVWNNMIKG 108

Query: 63  YLESENPRNAVFLYRKMLRKGGSIPDNYSYPLLFKACA--GLSLSFTANEILGHVVHLGF 122
           + + +     V LY  ML++G + PD++++P L       G +L+    ++  HVV  G 
Sbjct: 109 WSKVDCDGEGVRLYLNMLKEGVT-PDSHTFPFLLNGLKRDGGALA-CGKKLHCHVVKFGL 168

Query: 123 YSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSMINGYVRCGLADEALNLYYK 182
            S+L+V NA++ +   CG +  AR VFD  C  D+ SWN MI+GY R    +E++ L  +
Sbjct: 169 GSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVE 228

Query: 183 MEDLKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEMNIE------------------ 242
           ME   V P  VT++ ++SA +++++  L +++H+++ E   E                  
Sbjct: 229 MERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGE 288

Query: 243 --AAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALIGGFVQA 302
              A  +F +M  + ++SWT++V GY + G L+ A   F++MP +D + W  +I G+++A
Sbjct: 289 MDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRA 348

Query: 303 KRSKEALALFHEMQASNVDPDEVTVVSCLSACSQLGALDVGIWMHRFVDKQNLTMNVALG 357
               E+L +F EMQ++ + PDE T+VS L+AC+ LG+L++G W+  ++DK  +  +V +G
Sbjct: 349 GCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVG 408

[Close]

BLAST of Carg17977 vs. ExPASy TrEMBL
Match: A0A6J1ELP9 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111434490 PE=4 SV=1)

HSP 1 Score: 709.9 bits (1831), Expect = 5.8e-201
Identity = 356/378 (94.18%), Postives = 357/378 (94.44%), Query Frame = 0


Query: 1   MAQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNIFSWNVAI 60
           MAQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNIFSWNVAI
Sbjct: 67  MAQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNIFSWNVAI 126

Query: 61  RGYLESENPRNAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGHVVHLGF 120
           RGYLESENPRNAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGHVVHLGF
Sbjct: 127 RGYLESENPRNAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGHVVHLGF 186

Query: 121 YSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSMINGYVRCGLADEALNLYYK 180
           YSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSMINGYVRCGLADEALNLYYK
Sbjct: 187 YSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSMINGYVRCGLADEALNLYYK 246

Query: 181 MEDLKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEM--------------------N 240
           MEDLKVKPDEVTMIG+VSASAQLENVALGRKLHQFIEEM                    N
Sbjct: 247 MEDLKVKPDEVTMIGVVSASAQLENVALGRKLHQFIEEMGLNLTIPLVNALMDMYIKCKN 306

Query: 241 IEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALIGGFVQA 300
           IEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALIGGFVQA
Sbjct: 307 IEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALIGGFVQA 366

Query: 301 KRSKEALALFHEMQASNVDPDEVTVVSCLSACSQLGALDVGIWMHRFVDKQNLTMNVALG 359
           KRSKEAL LFHEMQASNVDPDEVTVVSCLSACSQLGALDVGIWMHRFVDKQNLTMNVALG
Sbjct: 367 KRSKEALTLFHEMQASNVDPDEVTVVSCLSACSQLGALDVGIWMHRFVDKQNLTMNVALG 426

[Close]

BLAST of Carg17977 vs. ExPASy TrEMBL
Match: A0A6J1HQQ6 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111466501 PE=4 SV=1)

HSP 1 Score: 693.3 bits (1788), Expect = 5.6e-196
Identity = 348/378 (92.06%), Postives = 351/378 (92.86%), Query Frame = 0


Query: 1   MAQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNIFSWNVAI 60
           M QMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAP+PN+FSWNVAI
Sbjct: 67  MTQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPSPNVFSWNVAI 126

Query: 61  RGYLESENPRNAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGHVVHLGF 120
           RGYLESENPRNAV LYRKMLRKGGS PDNYSYPLLFKACAGLSLSFTANEILGHVV LG 
Sbjct: 127 RGYLESENPRNAVLLYRKMLRKGGSTPDNYSYPLLFKACAGLSLSFTANEILGHVVQLGL 186

Query: 121 YSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSMINGYVRCGLADEALNLYYK 180
           YSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSMINGYVRCGLADEALNLYYK
Sbjct: 187 YSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSMINGYVRCGLADEALNLYYK 246

Query: 181 MEDLKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEM--------------------N 240
           MEDLKVKPDEVTMIGLVSASAQLENVALGRKLHQF EEM                    N
Sbjct: 247 MEDLKVKPDEVTMIGLVSASAQLENVALGRKLHQFTEEMGLNLTIPLVNALMDMYIKCKN 306

Query: 241 IEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALIGGFVQA 300
           IEAA+TLFENMTKKTIVSWTTMVVGYAKCGMLESAV LFNEMPEKDVVPWNALIGGFVQA
Sbjct: 307 IEAAKTLFENMTKKTIVSWTTMVVGYAKCGMLESAVMLFNEMPEKDVVPWNALIGGFVQA 366

Query: 301 KRSKEALALFHEMQASNVDPDEVTVVSCLSACSQLGALDVGIWMHRFVDKQNLTMNVALG 359
           KRSKEALALFHEMQASNVDPDEVTVVSCLSACSQLGALDVGIWMHRFVDKQNLTMNVALG
Sbjct: 367 KRSKEALALFHEMQASNVDPDEVTVVSCLSACSQLGALDVGIWMHRFVDKQNLTMNVALG 426

[Close]

BLAST of Carg17977 vs. ExPASy TrEMBL
Match: A0A6J1DMT0 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111021456 PE=4 SV=1)

HSP 1 Score: 638.3 bits (1645), Expect = 2.1e-179
Identity = 316/378 (83.60%), Postives = 339/378 (89.68%), Query Frame = 0


Query: 1   MAQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNIFSWNVAI 60
           MAQM+Q+ AQM+STG ISDGFALSRLVAFCAISEWRNLDYCDK+LDNA NPN+FSWNVAI
Sbjct: 68  MAQMKQVQAQMISTGFISDGFALSRLVAFCAISEWRNLDYCDKILDNAENPNVFSWNVAI 127

Query: 61  RGYLESENPRNAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGHVVHLGF 120
           RGY ESENPRNAV +YRKMLRKGGS PDNY+YPLLFKACAGLSL FTA EILGH + LGF
Sbjct: 128 RGYSESENPRNAVLMYRKMLRKGGSTPDNYTYPLLFKACAGLSLGFTAGEILGHALQLGF 187

Query: 121 YSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSMINGYVRCGLADEALNLYYK 180
            SDLFVHNAIIHVLVSCGELLAARKVFDES VRDLVSWNSMINGYVRCGLA+EALNLYYK
Sbjct: 188 DSDLFVHNAIIHVLVSCGELLAARKVFDESRVRDLVSWNSMINGYVRCGLANEALNLYYK 247

Query: 181 MEDLKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEM--------------------N 240
           ME+LKV PDEVTMIG+VSASAQLE++ LGRKLHQFIEEM                    N
Sbjct: 248 MEELKVMPDEVTMIGVVSASAQLEDLTLGRKLHQFIEEMGLNLTVPLTNSLMDMYIKCGN 307

Query: 241 IEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALIGGFVQA 300
           IE A+TLFENMTKKTIVSWTTMVVGYAK G+L SA+RLFNEMPEKDVVPWNALIGGFVQA
Sbjct: 308 IEPAKTLFENMTKKTIVSWTTMVVGYAKFGLLGSAMRLFNEMPEKDVVPWNALIGGFVQA 367

Query: 301 KRSKEALALFHEMQASNVDPDEVTVVSCLSACSQLGALDVGIWMHRFVDKQNLTMNVALG 359
           KRSKEALALFHEMQASNV+PDE+TVVSCLSACSQLGALDVGIWMH +V+K NL++NVALG
Sbjct: 368 KRSKEALALFHEMQASNVEPDEITVVSCLSACSQLGALDVGIWMHHYVEKHNLSVNVALG 427

[Close]

BLAST of Carg17977 vs. ExPASy TrEMBL
Match: A0A5A7UVG6 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00300 PE=4 SV=1)

HSP 1 Score: 632.5 bits (1630), Expect = 1.2e-177
Identity = 314/378 (83.07%), Postives = 336/378 (88.89%), Query Frame = 0


Query: 1   MAQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNIFSWNVAI 60
           MAQM+QIHAQM+STGLISDGFALSRLVAFCAISEWRNLDYCDK+L+NA NPN+FSWN+AI
Sbjct: 67  MAQMKQIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDKILNNAANPNVFSWNMAI 126

Query: 61  RGYLESENPRNAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGHVVHLGF 120
           RGY+ESENPR AV LYR MLRKG + PDNY+YPLLFK CAG SLS TANEILGHV+ LGF
Sbjct: 127 RGYIESENPRYAVLLYRNMLRKGSATPDNYTYPLLFKVCAGFSLSCTANEILGHVIQLGF 186

Query: 121 YSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSMINGYVRCGLADEALNLYYK 180
            SDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNS+INGYVRCGLADEAL+LYYK
Sbjct: 187 DSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSIINGYVRCGLADEALDLYYK 246

Query: 181 MEDLKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEM--------------------N 240
           M +L V PDEVTMIG+VSASAQLEN+ALGRKLHQFIEEM                    N
Sbjct: 247 MGELNVMPDEVTMIGVVSASAQLENLALGRKLHQFIEEMGLNLTVPLANALMDMYIKCKN 306

Query: 241 IEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALIGGFVQA 300
           IEAA+ LFENM KKT+VSWT MVVGYAK G+LESAVRLFNEMPEKDVVPWNALIGGFVQA
Sbjct: 307 IEAAKILFENMPKKTVVSWTIMVVGYAKFGLLESAVRLFNEMPEKDVVPWNALIGGFVQA 366

Query: 301 KRSKEALALFHEMQASNVDPDEVTVVSCLSACSQLGALDVGIWMHRFVDKQNLTMNVALG 359
           KRSKEALALFHEMQASNV PD VTVV+CLSACSQLGALDVGIWMH +VDK +LTMNVALG
Sbjct: 367 KRSKEALALFHEMQASNVAPDGVTVVNCLSACSQLGALDVGIWMHHYVDKHDLTMNVALG 426

[Close]

BLAST of Carg17977 vs. ExPASy TrEMBL
Match: A0A1S3BP74 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103492040 PE=4 SV=1)

HSP 1 Score: 630.9 bits (1626), Expect = 3.4e-177
Identity = 313/378 (82.80%), Postives = 335/378 (88.62%), Query Frame = 0


Query: 1   MAQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNIFSWNVAI 60
           MAQM+QIHAQM+STGLISDGFALSRLVAFCAISEWRNLDYCDK+L+NA NPN+FSWN+AI
Sbjct: 67  MAQMKQIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDKILNNAANPNVFSWNMAI 126

Query: 61  RGYLESENPRNAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGHVVHLGF 120
           RGY+ESENPR AV LYR MLRKG + PDNY+YPLLFK CAG SLS TANEILGHV+ LGF
Sbjct: 127 RGYIESENPRYAVLLYRNMLRKGSATPDNYTYPLLFKVCAGFSLSCTANEILGHVIQLGF 186

Query: 121 YSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSMINGYVRCGLADEALNLYYK 180
            SDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNS+INGYVRCGLADEAL+LYYK
Sbjct: 187 DSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSIINGYVRCGLADEALDLYYK 246

Query: 181 MEDLKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEM--------------------N 240
           M +L V PDEVTMIG+VSASAQLEN+ALGRKLHQFIEEM                    N
Sbjct: 247 MGELNVMPDEVTMIGVVSASAQLENLALGRKLHQFIEEMGLNLTVPLANALMDMYIKCKN 306

Query: 241 IEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALIGGFVQA 300
           IEAA+ LFENM KKT+VSWT MVVGYAK G+LESAVRLFNEMPEKDVVPWNALIGGFVQA
Sbjct: 307 IEAAKILFENMPKKTVVSWTIMVVGYAKFGLLESAVRLFNEMPEKDVVPWNALIGGFVQA 366

Query: 301 KRSKEALALFHEMQASNVDPDEVTVVSCLSACSQLGALDVGIWMHRFVDKQNLTMNVALG 359
           KRSKEALALFHEMQASNV PD VT V+CLSACSQLGALDVGIWMH +VDK +LTMNVALG
Sbjct: 367 KRSKEALALFHEMQASNVAPDGVTAVNCLSACSQLGALDVGIWMHHYVDKHDLTMNVALG 426

[Close]

BLAST of Carg17977 vs. TAIR 10
Match: AT2G22410.1 (SLOW GROWTH 1 )

HSP 1 Score: 421.0 bits (1081), Expect = 1.0e-117
Identity = 209/379 (55.15%), Postives = 276/379 (72.82%), Query Frame = 0


Query: 1   MAQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNIFSWNVAI 60
           +  ++QI AQM+  GLI D FA SRL+AFCA+SE R LDY  K+L    NPNIFSWNV I
Sbjct: 66  LLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENPNIFSWNVTI 125

Query: 61  RGYLESENPRNAVFLYRKMLRKG--GSIPDNYSYPLLFKACAGLSLSFTANEILGHVVHL 120
           RG+ ESENP+ +  LY++MLR G   S PD+++YP+LFK CA L LS   + ILGHV+ L
Sbjct: 126 RGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKL 185

Query: 121 GFYSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSMINGYVRCGLADEALNLY 180
                  VHNA IH+  SCG++  ARKVFDES VRDLVSWN +INGY + G A++A+ +Y
Sbjct: 186 RLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVY 245

Query: 181 YKMEDLKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEM------------------- 240
             ME   VKPD+VTMIGLVS+ + L ++  G++ +++++E                    
Sbjct: 246 KLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKC 305

Query: 241 -NIEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALIGGFV 300
            +I  A  +F+N+ K+TIVSWTTM+ GYA+CG+L+ + +LF++M EKDVV WNA+IGG V
Sbjct: 306 GDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSV 365

Query: 301 QAKRSKEALALFHEMQASNVDPDEVTVVSCLSACSQLGALDVGIWMHRFVDKQNLTMNVA 358
           QAKR ++ALALF EMQ SN  PDE+T++ CLSACSQLGALDVGIW+HR+++K +L++NVA
Sbjct: 366 QAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVA 425

[Close]

BLAST of Carg17977 vs. TAIR 10
Match: AT2G29760.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 293.1 bits (749), Expect = 3.3e-79
Identity = 149/377 (39.52%), Postives = 229/377 (60.74%), Query Frame = 0


Query: 1   MAQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNIFSWNVAI 60
           + Q++Q H  M+ TG  SD ++ S+L A  A+S + +L+Y  K+ D  P PN F+WN  I
Sbjct: 43  LRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLI 102

Query: 61  RGYLESENPRNAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGHVVHLGF 120
           R Y    +P  +++ +  M+ +    P+ Y++P L KA A +S       + G  V    
Sbjct: 103 RAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAV 162

Query: 121 YSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSMINGYVRCGLADEALNLYYK 180
            SD+FV N++IH   SCG+L +A KVF     +D+VSWNSMING+V+ G  D+AL L+ K
Sbjct: 163 GSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKK 222

Query: 181 MEDLKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEM--------------------N 240
           ME   VK   VTM+G++SA A++ N+  GR++  +IEE                     +
Sbjct: 223 MESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGS 282

Query: 241 IEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALIGGFVQA 300
           IE A+ LF+ M +K  V+WTTM+ GYA     E+A  + N MP+KD+V WNALI  + Q 
Sbjct: 283 IEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQN 342

Query: 301 KRSKEALALFHEMQ-ASNVDPDEVTVVSCLSACSQLGALDVGIWMHRFVDKQNLTMNVAL 357
            +  EAL +FHE+Q   N+  +++T+VS LSAC+Q+GAL++G W+H ++ K  + MN  +
Sbjct: 343 GKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHV 402

[Close]

BLAST of Carg17977 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 258.8 bits (660), Expect = 6.8e-69
Identity = 148/396 (37.37%), Postives = 218/396 (55.05%), Query Frame = 0


Query: 1   MAQMRQIHAQMVSTGLISDGFALSRLVAFCAIS-EWRNLDYCDKLLDNAPNPNIFSWNVA 60
           +  +R IHAQM+  GL +  +ALS+L+ FC +S  +  L Y   +      PN+  WN  
Sbjct: 46  LQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTM 105

Query: 61  IRGYLESENPRNAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGHVVHLG 120
            RG+  S +P +A+ LY  M+   G +P++Y++P + K+CA         +I GHV+ LG
Sbjct: 106 FRGHALSSDPVSALKLYVCMISL-GLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLG 165

Query: 121 FYSDLFVHNAIIHVLVSCGELLAARKVFDES----------------------------- 180
              DL+VH ++I + V  G L  A KVFD+S                             
Sbjct: 166 CDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFD 225

Query: 181 --CVRDLVSWNSMINGYVRCGLADEALNLYYKMEDLKVKPDEVTMIGLVSASAQLENVAL 240
              V+D+VSWN+MI+GY   G   EAL L+  M    V+PDE TM+ +VSA AQ  ++ L
Sbjct: 226 EIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIEL 285

Query: 241 GRKLHQFIEE----MNIEAAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPE 300
           GR++H +I++     N++    L +                Y+KCG LE+A  LF  +P 
Sbjct: 286 GRQVHLWIDDHGFGSNLKIVNALIDL---------------YSKCGELETACGLFERLPY 345

Query: 301 KDVVPWNALIGGFVQAKRSKEALALFHEMQASNVDPDEVTVVSCLSACSQLGALDVGIWM 359
           KDV+ WN LIGG+      KEAL LF EM  S   P++VT++S L AC+ LGA+D+G W+
Sbjct: 346 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWI 405

[Close]

BLAST of Carg17977 vs. TAIR 10
Match: AT3G12770.1 (mitochondrial editing factor 22 )

HSP 1 Score: 231.5 bits (589), Expect = 1.2e-60
Identity = 121/357 (33.89%), Postives = 215/357 (60.22%), Query Frame = 0


Query: 2   AQMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNIFSWNVAIR 61
           AQ++QIHA+++  GL   GF +++L+   A S + ++ +  ++ D+ P P IF WN  IR
Sbjct: 35  AQLKQIHARLLVLGLQFSGFLITKLIH--ASSSFGDITFARQVFDDLPRPQIFPWNAIIR 94

Query: 62  GYLESENPRNAVFLYRKMLRKGGSIPDNYSYPLLFKACAGLSLSFTANEILGHVVHLGFY 121
           GY  + + ++A+ +Y  M     S PD++++P L KAC+GLS       +   V  LGF 
Sbjct: 95  GYSRNNHFQDALLMYSNMQLARVS-PDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFD 154

Query: 122 SDLFVHNAIIHVLVSCGELLAARKVFDESCV--RDLVSWNSMINGYVRCGLADEALNLYY 181
           +D+FV N +I +   C  L +AR VF+   +  R +VSW ++++ Y + G   EAL ++ 
Sbjct: 155 ADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFS 214

Query: 182 KMEDLKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEMNIEAAETLFENMTKKTIVSW 241
           +M  + VKPD V ++ +++A   L+++  GR +H  + +M +E    L        ++S 
Sbjct: 215 QMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDL--------LISL 274

Query: 242 TTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALIGGFVQAKRSKEALALFHEMQASNVD 301
            TM   YAKCG + +A  LF++M   +++ WNA+I G+ +   ++EA+ +FHEM   +V 
Sbjct: 275 NTM---YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVR 334

Query: 302 PDEVTVVSCLSACSQLGALDVGIWMHRFVDKQNLTMNVALGTALVDMYAKCGNIKKA 357
           PD +++ S +SAC+Q+G+L+    M+ +V + +   +V + +AL+DM+AKCG+++ A
Sbjct: 335 PDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGA 377

[Close]

BLAST of Carg17977 vs. TAIR 10
Match: AT3G15930.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 227.6 bits (579), Expect = 1.7e-59
Identity = 122/376 (32.45%), Postives = 212/376 (56.38%), Query Frame = 0


Query: 3   QMRQIHAQMVSTGLISDGFALSRLVAFCAISEWRNLDYCDKLLDNAPNPNIFSWNVAIRG 62
           Q +Q+H+Q ++ G+  +     +L  F       ++ Y  KL    P P++  WN  I+G
Sbjct: 49  QFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEPDVVVWNNMIKG 108

Query: 63  YLESENPRNAVFLYRKMLRKGGSIPDNYSYPLLFKACA--GLSLSFTANEILGHVVHLGF 122
           + + +     V LY  ML++G + PD++++P L       G +L+    ++  HVV  G 
Sbjct: 109 WSKVDCDGEGVRLYLNMLKEGVT-PDSHTFPFLLNGLKRDGGALA-CGKKLHCHVVKFGL 168

Query: 123 YSDLFVHNAIIHVLVSCGELLAARKVFDESCVRDLVSWNSMINGYVRCGLADEALNLYYK 182
            S+L+V NA++ +   CG +  AR VFD  C  D+ SWN MI+GY R    +E++ L  +
Sbjct: 169 GSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVE 228

Query: 183 MEDLKVKPDEVTMIGLVSASAQLENVALGRKLHQFIEEMNIE------------------ 242
           ME   V P  VT++ ++SA +++++  L +++H+++ E   E                  
Sbjct: 229 MERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGE 288

Query: 243 --AAETLFENMTKKTIVSWTTMVVGYAKCGMLESAVRLFNEMPEKDVVPWNALIGGFVQA 302
              A  +F +M  + ++SWT++V GY + G L+ A   F++MP +D + W  +I G+++A
Sbjct: 289 MDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRA 348

Query: 303 KRSKEALALFHEMQASNVDPDEVTVVSCLSACSQLGALDVGIWMHRFVDKQNLTMNVALG 357
               E+L +F EMQ++ + PDE T+VS L+AC+ LG+L++G W+  ++DK  +  +V +G
Sbjct: 349 GCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVG 408

The following BLAST results are available for this feature:

BLAST of Carg17977 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022080.1	1.2e-224	100.00	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
XP_022927674.1	1.2e-200	94.18	pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucurbita ...	[more]
KAG6588182.1	2.9e-199	93.39	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
XP_023531862.1	2.8e-197	92.86	pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucurbita ...	[more]
XP_022966942.1	1.2e-195	92.06	pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Cucurbita ...	[more]

BLAST of Carg17977 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJZ3	1.5e-116	55.15	Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidop...	[more]
O82380	4.6e-78	39.52	Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidop...	[more]
Q9LN01	9.6e-68	37.37	Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop...	[more]
Q9LTV8	1.6e-59	33.89	Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana OX...	[more]
Q9LSB8	2.4e-58	32.45	Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis th...	[more]

BLAST of Carg17977 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ELP9	5.8e-201	94.18	pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Cucurbit...	[more]
A0A6J1HQQ6	5.6e-196	92.06	pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Cucurbit...	[more]
A0A6J1DMT0	2.1e-179	83.60	pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Momordic...	[more]
A0A5A7UVG6	1.2e-177	83.07	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BP74	3.4e-177	82.80	pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Cucumis ...	[more]

BLAST of Carg17977 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G22410.1	1.0e-117	55.15	SLOW GROWTH 1	[more]
AT2G29760.1	3.3e-79	39.52	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G08070.1	6.8e-69	37.37	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G12770.1	1.2e-60	33.89	mitochondrial editing factor 22	[more]
AT3G15930.1	1.7e-59	32.45	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 126..149 e-value: 0.85 score: 10.0
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 154..197 e-value: 4.7E-10 score: 39.5 coord: 51..100 e-value: 1.4E-8 score: 34.8 coord: 265..312 e-value: 6.2E-12 score: 45.5
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 237..269 e-value: 3.3E-8 score: 31.2 coord: 156..190 e-value: 7.9E-9 score: 33.2 coord: 270..302 e-value: 7.8E-8 score: 30.0
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 235..262 e-value: 1.4E-5 score: 24.7
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 52..86 score: 9.404853
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 154..188 score: 13.000159
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 235..269 score: 12.452094
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 270..300 score: 8.812943
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 105..218 e-value: 3.4E-21 score: 78.0 coord: 219..333 e-value: 5.7E-28 score: 100.2
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..104 e-value: 5.4E-10 score: 41.1
None	No IPR available	PANTHER	PTHR47925:SF92	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 220..358 coord: 1..182
None	No IPR available	PANTHER	PTHR47925	OS01G0913400 PROTEIN-RELATED	coord: 220..358
None	No IPR available	PANTHER	PTHR47925	OS01G0913400 PROTEIN-RELATED	coord: 1..182 coord: 172..222
None	No IPR available	PANTHER	PTHR47925:SF92	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 172..222

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17977-RA	Carg17977-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1900865	chloroplast RNA modification
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0005515	protein binding