Carg17975 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg17975
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	PRELI/MSF1 domain-containing protein
Location	Carg_Chr11: 4136547 .. 4138986 (-)
RNA-Seq Expression	Carg17975
Synteny	Carg17975

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAACGAGACCTGAAAATGGAAGCTTTGGGGATTGGATTACCCATTACAGTTCGATGTCTCCGTCTTCAGCTGCAATGGCGATGGGCAATTTCGTCAGAAAACTACATCTCTATTTAACCACACCTCGGTCCTATGGAAATGGTCTTTCCTCTTCCTGAAGCTCTGATTTGCCGAAATTTTCTATATTTTTCTGTGAGTTTCTATTTTGAGATTGAGATCTTGACCTATCGGAACCGCCTTCTTCCGCCGTCTGCGAACTCCATCTTCTTTCATCTCTCAGGTGAACTTTTTCTATCTTTAGCTCTTTCTTTTACATGCGTTTTGATTCCATTTTGCTGGGCGCTTCCTTAGGGGTTTTGTTTTTCACCTTTATTTGCACTATCTGTTGGATTTCTGTGGGTTTGCTGTGGGATTGTGGTTGAGAAATGCTCATAAAATAGGTTAAATTCCAAACTAGCTGCTCTAGATGCCTGTGGAAAGTGACTCAGCTGTGTTTTTCATCTTTATCTTCAAATCCAAGGAAGAATTTGAGATTGTTGGGAATGGTTAAAACTAGCATATGTTTTGCTGCCAGTTCTTTTGATGGATCATTATTTGTAATGATGGGACTCTTTTCTTTTTTGCTTGCAAATGTTTGACCCGTAAGTATGTGTGTTGTGCTGATTGTGAACATTCATCGTTTCCCTTTTCCTACTTTAGCTTTTGTTTTAACCGTTGTTGAAGATCGTTGGGAGAGGAGTCTCACATCTGCCAATTAAGGGATTGATCATGAGTTTATAAGTAATGAGTACATCTCCATTGGAATGAGGTCTTTTGGGAAAACCAAAAGTAAAGCCATGAGAGCGTATACTAAAAATTGACAATATCATACTATTGTGGAGGTCTGTTGTTCCTTACATGGTATCAGATCCATGCCCTTAACTTAACCATGTCAATAGAATCCTCAAATGTTGAACAAAGATGTTGTGAGCCTTGAAGGTGTAGTCAAAAGTGACTTAACTGTCGAACAAAGGGTGTACTTTGTTTAAGGGTTCTAGAGAAGGAGTCGAACCTCTATTAAGGAGAGGCTCTATGGTGTACTTTGTTCGAATGGAGGATTGTTGAGGATTATTGGGAAAGGAGTCTCACATCAGCTAATTAAGAGGTTAATCCTGAGTTTATAAGGAACACATCTCCATTGGAATGTAGCCTTTTGGGAAACCAAAATTAAAGCCATGAAAACTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGGTCCGTGGTTTCCAACACTAAATTGATAAAGTTACGATATATTTGCACAAGCCCAACAAACAACGATCAATATTGATTTGGGAGAAAATGACGTTAATAGGAGTTCTAGTTGTATGATACCACGTTAAAATCACAAAATTTTGAAGTTCAAACTGATGGATTGCAATATATTTAGTTTATTCTGCATATTCTTACATTATGATCTAGAATATATTCATTCTCTAAATAACTTGAATGTATTTATTGAACAATAGGTGAAAGAACTGCAGGATTGTTGGAGAGAAAATTTGTTCTTGTGAATGAACTATTATGAATTATGGAGAACTCCTGGGTTGGGCAGGACCTATTGACTTGATAAAACGAACTTTTTACTGTTCCTTATCTGATTTGATGTATGTATGTGTGATGCTCAGGATATCTGAGAATAGTGTGATGGTTAAAGCATACGCTCAGGAGTACACGTACGAGCACCCGTGGGAACGGGTAACTTCTGCATCTTGGCGTAAATTTGTGGACTCTGAAAACAGGCGTACGTTGTCCCATATTCTTGAAGTCGACACCTTAAACAGAAAGGTTGACACTGAATCTGGGAGGCTATATACAACCCGTGCTATTACCATCCATGCGCCTGGACCATGGTTTGTTCGTAAAATTGTTGGTCAAGATACCTGCCATTGTGTCGAATCCACGGTTGTAGATGCTCGGTCACGCTCGATGCAACTGACCACTCAGAATATTAGCTTTCAGAAGTTCATAGAAGTGGTGGAGAAGATTAGATATGAACCTCACCCTGATAATCCAAACGGATGGACAATGTGCAGACAGGAGACGAGTATTCGTATCAAGCCGTTGTCAGCGTTGGCGTCGATGGCCGAAAAAGTGGAGCAACGGTGTGCTGAGAGGTTCATGCAAAACAGTGTGAAGGGTAGAGAAGTGATGGAGAGGATTTGTAAGTATCTTGAAGCTGGATCTAGCGGACTCACTGTCTAGCTTTTGCTTCCTCTCATTGATTATGTACTGGTTCTTCAAAGGGGTCAGTGAGATCATGGTCTGTTTTCCAAGCTGTTTTTAACGAAATAATTCTCATGGAGAGAAACGTGTTTACTGGCTTTCCCTCCGGGCTTCCTCTCATTCCCTTCAAGGTTTTAAAATGCATCTGCCAATGAGAGGTTTCTAT

mRNA sequence

ATGCAAACGAGACCTGAAAATGGAAGCTTTGGGGATTGGATTACCCATTACAGTTCGATGTCTCCGTCTTCAGCTGCAATGGCGATGGGCAATTTCGTCAGAAAACTACATCTCTATTTAACCACACCTCGGTCCTATGGAAATGATCTTGACCTATCGGAACCGCCTTCTTCCGCCGTCTGCGAACTCCATCTTCTTTCATCTCTCAGGATATCTGAGAATAGTGTGATGGTTAAAGCATACGCTCAGGAGTACACGTACGAGCACCCGTGGGAACGGGTAACTTCTGCATCTTGGCGTAAATTTGTGGACTCTGAAAACAGGCGTACGTTGTCCCATATTCTTGAAGTCGACACCTTAAACAGAAAGGTTGACACTGAATCTGGGAGGCTATATACAACCCGTGCTATTACCATCCATGCGCCTGGACCATGGTTTGTTCGTAAAATTGTTGGTCAAGATACCTGCCATTGTGTCGAATCCACGGTTGTAGATGCTCGGTCACGCTCGATGCAACTGACCACTCAGAATATTAGCTTTCAGAAGTTCATAGAAGTGGTGGAGAAGATTAGATATGAACCTCACCCTGATAATCCAAACGGATGGACAATGTGCAGACAGGAGACGAGTATTCGTATCAAGCCGTTGTCAGCGTTGGCGTCGATGGCCGAAAAAGTGGAGCAACGGTGTGCTGAGAGGTTCATGCAAAACAGTGTGAAGGGTAGAGAAGTGATGGAGAGGATTTGTAAGTATCTTGAAGCTGGATCTAGCGGACTCACTGTCTAGCTTTTGCTTCCTCTCATTGATTATGTACTGGTTCTTCAAAGGGGTCAGTGAGATCATGGTCTGTTTTCCAAGCTGTTTTTAACGAAATAATTCTCATGGAGAGAAACGTGTTTACTGGCTTTCCCTCCGGGCTTCCTCTCATTCCCTTCAAGGTTTTAAAATGCATCTGCCAATGAGAGGTTTCTAT

Coding sequence (CDS)

ATGCAAACGAGACCTGAAAATGGAAGCTTTGGGGATTGGATTACCCATTACAGTTCGATGTCTCCGTCTTCAGCTGCAATGGCGATGGGCAATTTCGTCAGAAAACTACATCTCTATTTAACCACACCTCGGTCCTATGGAAATGATCTTGACCTATCGGAACCGCCTTCTTCCGCCGTCTGCGAACTCCATCTTCTTTCATCTCTCAGGATATCTGAGAATAGTGTGATGGTTAAAGCATACGCTCAGGAGTACACGTACGAGCACCCGTGGGAACGGGTAACTTCTGCATCTTGGCGTAAATTTGTGGACTCTGAAAACAGGCGTACGTTGTCCCATATTCTTGAAGTCGACACCTTAAACAGAAAGGTTGACACTGAATCTGGGAGGCTATATACAACCCGTGCTATTACCATCCATGCGCCTGGACCATGGTTTGTTCGTAAAATTGTTGGTCAAGATACCTGCCATTGTGTCGAATCCACGGTTGTAGATGCTCGGTCACGCTCGATGCAACTGACCACTCAGAATATTAGCTTTCAGAAGTTCATAGAAGTGGTGGAGAAGATTAGATATGAACCTCACCCTGATAATCCAAACGGATGGACAATGTGCAGACAGGAGACGAGTATTCGTATCAAGCCGTTGTCAGCGTTGGCGTCGATGGCCGAAAAAGTGGAGCAACGGTGTGCTGAGAGGTTCATGCAAAACAGTGTGAAGGGTAGAGAAGTGATGGAGAGGATTTGTAAGTATCTTGAAGCTGGATCTAGCGGACTCACTGTCTAG

Protein sequence

MQTRPENGSFGDWITHYSSMSPSSAAMAMGNFVRKLHLYLTTPRSYGNDLDLSEPPSSAVCELHLLSSLRISENSVMVKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDTESGRLYTTRAITIHAPGPWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPHPDNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAGSSGLTV

Homology

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BLAST of Carg17975 vs. NCBI nr
Match: KAG7022082.1 (Protein slowmo-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 532.7 bits (1371), Expect = 1.8e-147
Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 0


Query: 1   MQTRPENGSFGDWITHYSSMSPSSAAMAMGNFVRKLHLYLTTPRSYGNDLDLSEPPSSAV 60
           MQTRPENGSFGDWITHYSSMSPSSAAMAMGNFVRKLHLYLTTPRSYGNDLDLSEPPSSAV
Sbjct: 1   MQTRPENGSFGDWITHYSSMSPSSAAMAMGNFVRKLHLYLTTPRSYGNDLDLSEPPSSAV 60

Query: 61  CELHLLSSLRISENSVMVKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTL 120
           CELHLLSSLRISENSVMVKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTL
Sbjct: 61  CELHLLSSLRISENSVMVKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTL 120

Query: 121 NRKVDTESGRLYTTRAITIHAPGPWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISF 180
           NRKVDTESGRLYTTRAITIHAPGPWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISF
Sbjct: 121 NRKVDTESGRLYTTRAITIHAPGPWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISF 180

Query: 181 QKFIEVVEKIRYEPHPDNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVK 240
           QKFIEVVEKIRYEPHPDNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVK
Sbjct: 181 QKFIEVVEKIRYEPHPDNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVK 240

Query: 241 GREVMERICKYLEAGSSGLTV 262
           GREVMERICKYLEAGSSGLTV
Sbjct: 241 GREVMERICKYLEAGSSGLTV 261

[Close]

BLAST of Carg17975 vs. NCBI nr
Match: KAG6588184.1 (Protein slowmo-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 521.9 bits (1343), Expect = 3.1e-144
Identity = 256/261 (98.08%), Postives = 257/261 (98.47%), Query Frame = 0


Query: 1   MQTRPENGSFGDWITHYSSMSPSSAAMAMGNFVRKLHLYLTTPRSYGNDLDLSEPPSSAV 60
           MQTRPENGSFGDWITHYSSMSPSSAAMAMGNFVRKLHLYLTTPRSYGNDLDLSEPPSSA 
Sbjct: 1   MQTRPENGSFGDWITHYSSMSPSSAAMAMGNFVRKLHLYLTTPRSYGNDLDLSEPPSSAA 60

Query: 61  CELHLLSSLRISENSVMVKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTL 120
           CE  LLSSLRISENSVMVKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTL
Sbjct: 61  CEPRLLSSLRISENSVMVKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTL 120

Query: 121 NRKVDTESGRLYTTRAITIHAPGPWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISF 180
           NRKVD ESG+LYTTRAITIHAPGPWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISF
Sbjct: 121 NRKVDIESGKLYTTRAITIHAPGPWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISF 180

Query: 181 QKFIEVVEKIRYEPHPDNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVK 240
           QKFIEVVEKIRYEPHPDNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVK
Sbjct: 181 QKFIEVVEKIRYEPHPDNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVK 240

Query: 241 GREVMERICKYLEAGSSGLTV 262
           GREVMERICKYLEAGSSGLTV
Sbjct: 241 GREVMERICKYLEAGSSGLTV 261

[Close]

BLAST of Carg17975 vs. NCBI nr
Match: XP_022927894.1 (protein slowmo homolog [Cucurbita moschata])

HSP 1 Score: 379.8 bits (974), Expect = 1.9e-101
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 77  MVKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDTESGRLYTTRA 136
           MVKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDTESGRLYTTRA
Sbjct: 1   MVKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDTESGRLYTTRA 60

Query: 137 ITIHAPGPWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPHP 196
           ITIHAPGPWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPHP
Sbjct: 61  ITIHAPGPWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPHP 120

Query: 197 DNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAGS 256
           DNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAGS
Sbjct: 121 DNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAGS 180

Query: 257 SGLTV 262
           SGLTV
Sbjct: 181 SGLTV 185

[Close]

BLAST of Carg17975 vs. NCBI nr
Match: XP_023531860.1 (protein slowmo homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 376.3 bits (965), Expect = 2.1e-100
Identity = 183/185 (98.92%), Postives = 184/185 (99.46%), Query Frame = 0


Query: 77  MVKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDTESGRLYTTRA 136
           MVKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVD ESG+LYTTRA
Sbjct: 1   MVKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDIESGKLYTTRA 60

Query: 137 ITIHAPGPWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPHP 196
           ITIHAPGPWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPHP
Sbjct: 61  ITIHAPGPWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPHP 120

Query: 197 DNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAGS 256
           DNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAGS
Sbjct: 121 DNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAGS 180

Query: 257 SGLTV 262
           SGLTV
Sbjct: 181 SGLTV 185

[Close]

BLAST of Carg17975 vs. NCBI nr
Match: XP_022960775.1 (protein slowmo homolog [Cucurbita moschata] >XP_022988219.1 protein slowmo homolog [Cucurbita maxima] >XP_023516290.1 protein slowmo homolog [Cucurbita pepo subsp. pepo] >KAG7023860.1 Protein slowmo-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 347.1 bits (889), Expect = 1.4e-91
Identity = 165/185 (89.19%), Postives = 177/185 (95.68%), Query Frame = 0


Query: 77  MVKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDTESGRLYTTRA 136
           MV+AY+QEYTY+HPWERVT ASWRKF D EN+RTLSHILEVDTLNRKVD ESG+LYTTRA
Sbjct: 1   MVRAYSQEYTYKHPWERVTCASWRKFTDPENKRTLSHILEVDTLNRKVDPESGKLYTTRA 60

Query: 137 ITIHAPGPWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPHP 196
           ITIHAPGPWF+RKIVGQD CHCVESTVVDA S+SMQLTT+NIS QKFIEVVEKIRY+PHP
Sbjct: 61  ITIHAPGPWFIRKIVGQDICHCVESTVVDAWSQSMQLTTRNISLQKFIEVVEKIRYDPHP 120

Query: 197 DNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAGS 256
           DNPNGWT+CRQETSIRIKPLSALASMAEKVEQRCAERF+QNSVKGREVMERICKYLEA S
Sbjct: 121 DNPNGWTICRQETSIRIKPLSALASMAEKVEQRCAERFVQNSVKGREVMERICKYLEAES 180

Query: 257 SGLTV 262
           SGLT+
Sbjct: 181 SGLTI 185

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BLAST of Carg17975 vs. ExPASy Swiss-Prot
Match: Q54G07 (Protein slowmo homolog OS=Dictyostelium discoideum OX=44689 GN=slmo PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.0e-21
Identity = 56/163 (34.36%), Postives = 93/163 (57.06%), Query Frame = 0


Query: 84  EYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDTESGRLYTTRAITIHAPG 143
           ++TY+H W   ++AS+RK+   E       IL +D L++++D  +G L  T+ I      
Sbjct: 8   KHTYKHLWSDASTASFRKYPSPER----PDILSIDILSKEIDPTTGVLKCTKLIICKGNT 67

Query: 144 PWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPHPDNPNGWT 203
           P +++ I+G   C   E T VD +++ M L T+N++F   + V E   YE HPDN   WT
Sbjct: 68  PSWLKSILGSGECLFYEETTVDPKNKIMTLKTKNLNFTNILGVDEVCTYEQHPDNEE-WT 127

Query: 204 MCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVME 247
           +  QE ++     S++  +A K+E  C +RF+ N+ KGR++ME
Sbjct: 128 LFTQEATV----TSSIFGVARKMEAFCLDRFVANAGKGRKIME 161

[Close]

BLAST of Carg17975 vs. ExPASy Swiss-Prot
Match: Q04006 (Protein UPS3, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UPS3 PE=1 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.5e-20
Identity = 55/168 (32.74%), Postives = 97/168 (57.74%), Query Frame = 0


Query: 78  VKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDTESGRLYTTRAI 137
           +K++ + Y +++PWE+VT+A+W K+ +    +  +H++ VD L R++      L T R I
Sbjct: 1   MKSFQKSYEFDYPWEKVTTANWMKYPN----KISTHVIAVDVLRRELKEHGDVLLTERLI 60

Query: 138 TIHAPGPWFVRKIVGQ-DTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPHP 197
           TI    P ++  +VG  +  +  E + VD R RS+ + + N++F   ++  E +RY PHP
Sbjct: 61  TIRQNTPHWMSILVGNTNLAYVREVSTVDRRDRSLTMRSCNMTFPHILKCYETVRYVPHP 120

Query: 198 DNPNGWTMCRQETSIRIKPLSAL--ASMAEKVEQRCAERFMQNSVKGR 243
            NP+  T+ +Q+     K LS +   + +EKVE    +RF  N+VKG+
Sbjct: 121 KNPSNVTLFKQDA----KFLSGVPTKTFSEKVENWGVKRFSDNAVKGK 160

[Close]

BLAST of Carg17975 vs. ExPASy Swiss-Prot
Match: O59707 (UPS-like protein C36.10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC36.10 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.5e-19
Identity = 54/172 (31.40%), Postives = 101/172 (58.72%), Query Frame = 0


Query: 78  VKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDTESGRLYTTRAI 137
           +K +   + +++P+E+V++A W+K+ +       +H++ VDTL+RKV  ++G LYT R I
Sbjct: 1   MKIFESCHLFQYPFEQVSAAHWQKYPNEH----ATHVIAVDTLDRKV-LDNGVLYTERLI 60

Query: 138 TIHAPGP-WFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPHP 197
           T H   P W ++ I G   C+  E++ VD ++R++ L T N++F   + V E + Y PHP
Sbjct: 61  TCHQALPRWILKLIDGAQDCYIRETSYVDLKARTLTLLTSNLTFSDRLRVDETVTYSPHP 120

Query: 198 DNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERI 249
           +     T+ +QE   RI+ L+ +  ++  +EQ   + F + + +G+E  E +
Sbjct: 121 ELEA--TVFQQEA--RIEALACMKRLSNLIEQWSVDGFGKKASRGKEGFESV 163

[Close]

BLAST of Carg17975 vs. ExPASy Swiss-Prot
Match: Q4R5S9 (PRELI domain containing protein 3B OS=Macaca fascicularis OX=9541 GN=PRELID3B PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.2e-18
Identity = 59/185 (31.89%), Postives = 102/185 (55.14%), Query Frame = 0


Query: 78  VKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDTESGRLYTTRAI 137
           +K +  E+ ++HPWE VT+A+ +K+ +  N      ++ VD L+R +D  SG+L++ R +
Sbjct: 1   MKIWTSEHVFDHPWETVTTAAMQKYPNPMN----PSVVGVDVLDRHID-PSGKLHSHRLL 60

Query: 138 TIHAPGPWFVRKIVG--QDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPH 197
           +     P  V+ ++G  +   +  E +VVD   ++M+L + NISF   + V E++ Y+PH
Sbjct: 61  STEWGLPSIVKSLIGAARTKTYVQEHSVVDPVEKTMELKSTNISFTNMVSVDERLIYKPH 120

Query: 198 PDNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAG 257
           P +P+  T+  QE  I +K +    S++  +E   A     N+ KGRE ME +   L A 
Sbjct: 121 PQDPDK-TILTQEAIITVKGV----SLSSYLEGLMASTISSNASKGREAMEWVIHKLNAE 175

Query: 258 SSGLT 261
              LT
Sbjct: 181 IEELT 175

[Close]

BLAST of Carg17975 vs. ExPASy Swiss-Prot
Match: Q58DB0 (PRELI domain containing protein 3B OS=Bos taurus OX=9913 GN=PRELID3B PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.6e-18
Identity = 60/185 (32.43%), Postives = 100/185 (54.05%), Query Frame = 0


Query: 78  VKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDTESGRLYTTRAI 137
           +K +  E+ ++HPWE VT+A+ +K+ +  N      ++ VD L+R +D  SG+L++ R +
Sbjct: 1   MKIWTSEHVFDHPWETVTTAAMQKYPNPMN----PSVVGVDVLDRHID-PSGKLHSHRLL 60

Query: 138 TIHAPGPWFVRKIVG--QDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPH 197
           +     P  V+ I+G  +   +  E +VVD   ++M+L + NISF   + V E++ Y+PH
Sbjct: 61  STEWGLPSIVKSIIGAARTKTYVQEHSVVDPVEKTMELKSTNISFTNMVSVDERLIYKPH 120

Query: 198 PDNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAG 257
           P +P   T+  QE  I +K +    S+   +E   A     N+ KGRE ME +   L A 
Sbjct: 121 PQDPEK-TILTQEAIITVKGV----SLGSYLEGLMASTISSNANKGREAMEWVIHKLNAE 175

Query: 258 SSGLT 261
              LT
Sbjct: 181 IEELT 175

[Close]

BLAST of Carg17975 vs. ExPASy TrEMBL
Match: A0A6J1EJA4 (protein slowmo homolog OS=Cucurbita moschata OX=3662 GN=LOC111434654 PE=4 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 9.2e-102
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 77  MVKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDTESGRLYTTRA 136
           MVKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDTESGRLYTTRA
Sbjct: 1   MVKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDTESGRLYTTRA 60

Query: 137 ITIHAPGPWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPHP 196
           ITIHAPGPWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPHP
Sbjct: 61  ITIHAPGPWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPHP 120

Query: 197 DNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAGS 256
           DNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAGS
Sbjct: 121 DNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAGS 180

Query: 257 SGLTV 262
           SGLTV
Sbjct: 181 SGLTV 185

[Close]

BLAST of Carg17975 vs. ExPASy TrEMBL
Match: A0A6J1JKY7 (protein slowmo homolog OS=Cucurbita maxima OX=3661 GN=LOC111485522 PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 6.6e-92
Identity = 165/185 (89.19%), Postives = 177/185 (95.68%), Query Frame = 0


Query: 77  MVKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDTESGRLYTTRA 136
           MV+AY+QEYTY+HPWERVT ASWRKF D EN+RTLSHILEVDTLNRKVD ESG+LYTTRA
Sbjct: 1   MVRAYSQEYTYKHPWERVTCASWRKFTDPENKRTLSHILEVDTLNRKVDPESGKLYTTRA 60

Query: 137 ITIHAPGPWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPHP 196
           ITIHAPGPWF+RKIVGQD CHCVESTVVDA S+SMQLTT+NIS QKFIEVVEKIRY+PHP
Sbjct: 61  ITIHAPGPWFIRKIVGQDICHCVESTVVDAWSQSMQLTTRNISLQKFIEVVEKIRYDPHP 120

Query: 197 DNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAGS 256
           DNPNGWT+CRQETSIRIKPLSALASMAEKVEQRCAERF+QNSVKGREVMERICKYLEA S
Sbjct: 121 DNPNGWTICRQETSIRIKPLSALASMAEKVEQRCAERFVQNSVKGREVMERICKYLEAES 180

Query: 257 SGLTV 262
           SGLT+
Sbjct: 181 SGLTI 185

[Close]

BLAST of Carg17975 vs. ExPASy TrEMBL
Match: A0A6J1HA28 (protein slowmo homolog OS=Cucurbita moschata OX=3662 GN=LOC111461476 PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 6.6e-92
Identity = 165/185 (89.19%), Postives = 177/185 (95.68%), Query Frame = 0


Query: 77  MVKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDTESGRLYTTRA 136
           MV+AY+QEYTY+HPWERVT ASWRKF D EN+RTLSHILEVDTLNRKVD ESG+LYTTRA
Sbjct: 1   MVRAYSQEYTYKHPWERVTCASWRKFTDPENKRTLSHILEVDTLNRKVDPESGKLYTTRA 60

Query: 137 ITIHAPGPWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPHP 196
           ITIHAPGPWF+RKIVGQD CHCVESTVVDA S+SMQLTT+NIS QKFIEVVEKIRY+PHP
Sbjct: 61  ITIHAPGPWFIRKIVGQDICHCVESTVVDAWSQSMQLTTRNISLQKFIEVVEKIRYDPHP 120

Query: 197 DNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAGS 256
           DNPNGWT+CRQETSIRIKPLSALASMAEKVEQRCAERF+QNSVKGREVMERICKYLEA S
Sbjct: 121 DNPNGWTICRQETSIRIKPLSALASMAEKVEQRCAERFVQNSVKGREVMERICKYLEAES 180

Query: 257 SGLTV 262
           SGLT+
Sbjct: 181 SGLTI 185

[Close]

BLAST of Carg17975 vs. ExPASy TrEMBL
Match: A0A5D3D5P3 (Protein slowmo-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00340 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.9e-91
Identity = 164/185 (88.65%), Postives = 175/185 (94.59%), Query Frame = 0


Query: 77  MVKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDTESGRLYTTRA 136
           MVKAY+QEYTY+HPWERVT ASWRKF D EN+RTLSHILEVDTLNRKVD ESG+LYTTRA
Sbjct: 1   MVKAYSQEYTYKHPWERVTCASWRKFADPENKRTLSHILEVDTLNRKVDAESGKLYTTRA 60

Query: 137 ITIHAPGPWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPHP 196
           ITIHAPGPWFVRKIVGQD CHCVESTVVDARS+SMQLTT+NIS QKFIEVVEKIRYEPHP
Sbjct: 61  ITIHAPGPWFVRKIVGQDICHCVESTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP 120

Query: 197 DNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAGS 256
           +NPNGWT+C+QETSIRIKPLSALASMAEKVEQRCAERF+QNS KGREVMERICKYLEA S
Sbjct: 121 ENPNGWTICKQETSIRIKPLSALASMAEKVEQRCAERFVQNSAKGREVMERICKYLEAES 180

Query: 257 SGLTV 262
           SG  +
Sbjct: 181 SGFAI 185

[Close]

BLAST of Carg17975 vs. ExPASy TrEMBL
Match: A0A1S3BPV8 (protein slowmo homolog OS=Cucumis melo OX=3656 GN=LOC103492037 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.9e-91
Identity = 164/185 (88.65%), Postives = 175/185 (94.59%), Query Frame = 0


Query: 77  MVKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDTESGRLYTTRA 136
           MVKAY+QEYTY+HPWERVT ASWRKF D EN+RTLSHILEVDTLNRKVD ESG+LYTTRA
Sbjct: 1   MVKAYSQEYTYKHPWERVTCASWRKFADPENKRTLSHILEVDTLNRKVDAESGKLYTTRA 60

Query: 137 ITIHAPGPWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPHP 196
           ITIHAPGPWFVRKIVGQD CHCVESTVVDARS+SMQLTT+NIS QKFIEVVEKIRYEPHP
Sbjct: 61  ITIHAPGPWFVRKIVGQDICHCVESTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP 120

Query: 197 DNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAGS 256
           +NPNGWT+C+QETSIRIKPLSALASMAEKVEQRCAERF+QNS KGREVMERICKYLEA S
Sbjct: 121 ENPNGWTICKQETSIRIKPLSALASMAEKVEQRCAERFVQNSAKGREVMERICKYLEAES 180

Query: 257 SGLTV 262
           SG  +
Sbjct: 181 SGFAI 185

[Close]

BLAST of Carg17975 vs. TAIR 10
Match: AT5G13070.1 (MSF1-like family protein )

HSP 1 Score: 312.4 bits (799), Expect = 3.5e-85
Identity = 143/181 (79.01%), Postives = 167/181 (92.27%), Query Frame = 0


Query: 77  MVKAYAQEYTYEHPWERVTSASWRKFVDSENRRTLSHILEVDTLNRKVDTESGRLYTTRA 136
           MVKAY QE+ Y+HPWERV++ASWRKF D EN+R LSHILEVDTLNRK+DTE+G+L+TTRA
Sbjct: 1   MVKAYRQEHVYKHPWERVSAASWRKFADPENKRILSHILEVDTLNRKLDTETGKLHTTRA 60

Query: 137 ITIHAPGPWFVRKIVGQDTCHCVESTVVDARSRSMQLTTQNISFQKFIEVVEKIRYEPHP 196
           +TIHAPGPWF+ +I+GQD CHCVESTVVD +SRSMQLTT+NIS +KFIEV E+IRY+PHP
Sbjct: 61  LTIHAPGPWFLHRIIGQDICHCVESTVVDGKSRSMQLTTKNISLKKFIEVEERIRYDPHP 120

Query: 197 DNPNGWTMCRQETSIRIKPLSALASMAEKVEQRCAERFMQNSVKGREVMERICKYLEAGS 256
           DNP+ WT+C QETSIRIKPLSALASMAEKVEQ+CAE+FMQNS KGREVMERICKY+EA S
Sbjct: 121 DNPSAWTVCSQETSIRIKPLSALASMAEKVEQKCAEKFMQNSAKGREVMERICKYMEAES 180

Query: 257 S 258
           +
Sbjct: 181 A 181

The following BLAST results are available for this feature:

BLAST of Carg17975 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022082.1	1.8e-147	100.00	Protein slowmo-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
KAG6588184.1	3.1e-144	98.08	Protein slowmo-like protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022927894.1	1.9e-101	100.00	protein slowmo homolog [Cucurbita moschata]	[more]
XP_023531860.1	2.1e-100	98.92	protein slowmo homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022960775.1	1.4e-91	89.19	protein slowmo homolog [Cucurbita moschata] >XP_022988219.1 protein slowmo homol...	[more]

BLAST of Carg17975 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54G07	2.0e-21	34.36	Protein slowmo homolog OS=Dictyostelium discoideum OX=44689 GN=slmo PE=3 SV=1	[more]
Q04006	6.5e-20	32.74	Protein UPS3, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2...	[more]
O59707	5.5e-19	31.40	UPS-like protein C36.10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) O...	[more]
Q4R5S9	1.2e-18	31.89	PRELI domain containing protein 3B OS=Macaca fascicularis OX=9541 GN=PRELID3B PE...	[more]
Q58DB0	1.6e-18	32.43	PRELI domain containing protein 3B OS=Bos taurus OX=9913 GN=PRELID3B PE=2 SV=1	[more]

BLAST of Carg17975 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EJA4	9.2e-102	100.00	protein slowmo homolog OS=Cucurbita moschata OX=3662 GN=LOC111434654 PE=4 SV=1	[more]
A0A6J1JKY7	6.6e-92	89.19	protein slowmo homolog OS=Cucurbita maxima OX=3661 GN=LOC111485522 PE=4 SV=1	[more]
A0A6J1HA28	6.6e-92	89.19	protein slowmo homolog OS=Cucurbita moschata OX=3662 GN=LOC111461476 PE=4 SV=1	[more]
A0A5D3D5P3	1.9e-91	88.65	Protein slowmo-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3BPV8	1.9e-91	88.65	protein slowmo homolog OS=Cucumis melo OX=3656 GN=LOC103492037 PE=4 SV=1	[more]

BLAST of Carg17975 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G13070.1	3.5e-85	79.01	MSF1-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006797	PRELI/MSF1 domain	PFAM	PF04707	PRELI	coord: 92..253 e-value: 4.1E-48 score: 163.2
IPR006797	PRELI/MSF1 domain	PROSITE	PS50904	PRELI_MSF1	coord: 78..257 score: 41.184757
IPR037365	Slowmo/Ups family	PANTHER	PTHR11158	MSF1/PX19 RELATED	coord: 77..256
None	No IPR available	PANTHER	PTHR11158:SF34	PRELI DOMAIN CONTAINING PROTEIN 3A-LIKE ISOFORM X1	coord: 77..256

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17975-RA	Carg17975-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0120009	intermembrane lipid transfer
biological_process	GO:0015914	phospholipid transport
cellular_component	GO:0005758	mitochondrial intermembrane space
molecular_function	GO:1990050	phosphatidic acid transfer activity