Carg17971 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg17971
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	chaperonin-like RbcX protein 2, chloroplastic
Location	Carg_Chr11: 4161211 .. 4164838 (-)
RNA-Seq Expression	Carg17971
Synteny	Carg17971

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTAAGATTCATTCAACTTCATTTCCTCCTCCCCCTCACCTCTTCCAGCCTCCCGCCATTGCCCAAGAACGCTCTACGATTTCTAATCTCCGAATTCCTTCGCAACCCATTTCGAATCTCTGGCTGTTAATTCAGTGGTTCGATCTTGTTTTTCGAATCGATTCATTACGAGGGGTCGAATTTGATTGTGAAACGATGGTGAGGGGTTTATCTGTTGTGGGTTCATCGGTGGTGGACTCGCATACTTCCCCTTGTTTGTGTTTGGATGTTCTGCCCACAACGAGTATCAATCTCAAAAGTAGTGGGGATTTTGTTATGAAAAGGAATTCAATGGGTCGAAAGCGTTTGCCCAAACCAAAACACTTGGATCTAAGCAGCTCGTTCGTTGATGCTGGACGGGAATGGCTGCTCTCGGCGGATATGATAAACAGGAGTTCAAGGAAGCAGCACAAGAACAGAAGACTTGTGGTGATTGATGAACTTGGAGGGCAGTATGAAGACACCTTTGATGATGTTAAAATGGTAAGAAATTTGAATTTGAAAAGGATTGTTCATCTGTTTACTTGAAGAGAGATAGGGTTATAAGCATGTTTTGATTGCTTCCTGCACACAATCTTGCAGTTTCTGTAGGATTTGGAGTCTTTTTGATGTTGATAAGACATGTTTTTGCGTACTTTTGGAGATTATGGTTCTTGGAAGGCTTCATTTTAGGTTCAAAATGATTTGGATATGCCAAAAAGTCTTGAAAATTCATGTTTCTGTCTAGTTCCTTGATTCTTATTATGTCCATAAACATTAATGATATAGGACAACGCAATGATTCATGTCCTAAGATGTTCATGGTGGCTCTATGCATAGAAGAATTATGGGAAATTGTGAATATCCTCTCTTCGAAACGGTCATGTGAAGATTTGTTTGTGAGATCCTACATTGGTTGGAGAGGGGAACGAGGGGAACGAAGCATTTCTTATAAGATTTGGAAACCTCTCCCTAGTGGATGCGGTCTAAAACCTTGAGGGGAAGTCCGGAAGGGAAAGCCCAAAAAGGAAAATATCTGCTAGCGGTAGGCTTGGGCTGTTACAAATGGTATTAGAGCCAGATATCGAGTAGTGTGCCAGTGAGAACTCTGGCCCCCAAGGGGGTGGATTGTGAGACCTCACATTTATTGGAGACGGGAACGAAGCATTCTTTATAAAATGTGGAAACCTCTCCCTAGTGGACGCGTTTTAAAACTTTGAGGGGAAGCCTGGAAGGGAAAGCCCTAAGAGGACGATATCTGCTAGCAGTAGGTTTGGGCTGTTACAAACGGTATCAGAGACAGACACTGAGCGGTGTGCCAGCGAGGACACTAGGCTCCCAAGGGGTGGATTGTGAGACCTCACATTTGTTGGAGACGAGAACGAAGCATTCCTTATAAGATGTGGAAACCTCTCCCTAGTGGACGCGTTTTAAAACCTTAAGGGGAAGTCCGGAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCAGTAGGCTTGGCAACAAATGGTATTAGAGCCAGTCATCGAGCGGTGTGCTAGCGAGGACACTGGGCTCCCAAGGGGGTGGATTGTGAGACCTCGCATTGGTTGGAGAGAGAAACGAAGCATTCCTTATAAGATGTGGAAACCTCTCCCTAGTGGAAGCGTTTTAAAACCTTGAGAGGAAGCCTGAAAGGGAAAGCTCAAAAAAAACAATATCTAATAGCGGTGGGCTTAGCTGTTACATTGCTTGCTCTAGTGAGTCAAGGGAGTTGGCCTAAATTCACATAGCAACTCTATAAAGGACCTAATATTATGATAGCTTTTAGTACACCTGCTACCATTTTGACTGCCCAACCACCAATATAGTTTCAAGGTAAGGAATAGCATGTCACACTTGAATCACTACAATCTAGATGGGTTTCCGATTTTGCTTGTAGTCGTCGTCTTTTAGCTTATGTAGTGGTCGACCTTCACTTCCTACACGCACGCACCCACCAAAATACTTCATTGGTTCTACACGAAGCCAAGCCAACACATACAATAGGCGAAGTAACGACCCCCATTTCATAGCACCTAGAGAACGCAAGTTTGATTGAGGATTGGAGATGAGAGGTGGAAAAAAAAGGCTCGAGATGGATTTATGAGTCAATACAGTCATAACCACACTTGTCACTCGAAAGCCAGCAGGTCGATACACATATAAAATACAAAGAGGAACCTGAAAATTTTCTTGTTTTATCCAGTTTCTTGAGCTTTATCTTTCTCCTTCTCCCACCCTTTGAATTGACTGAGACTTCTATGGCTGCAGCAAATACTTAATTATTTTACATACAAGGCTGTGAGGACTGTTATGAACCAACTGTATGAAATGAACCCTCCTACTTACAGGTGGCTTTATGAGTAAGTGCTATCTCCGTTTCTTCTGGTTTAGTCATATTTCAAGCTGAATTCGAGTCGTTTAGTTCAAAGCTTCGAAAACGATTATGACCTTTTGTTTAAATATTTGAGTTTAGCTGTGAAATTATTTGATGTTAGTATGGTCGTGTCCTTTAATTTTGATCCAAGTTTGTGTTCTTTCAACAGTTTCGTCTTATCTAACAAGCCATCAGATGGAAAACATTTCATTCGCACACTTGTAAAGGTACTTAAAATCTATACCTATTTCAAGACTTGGATAGTGTTTAGCAGTGTGGAGAAGCAAAACCTGCATTACTCTATGCTTAGAACATGCTTTCACTGTTGGTTTAAGACTCGACTTGTTCTAGCGATCTCATGTTGAACATGGCTTTACTTGTGAGCTGGCCATGTTTAGTTGCGAGATCCCACGTCGGTTGGAGAGGGGAACGAAACGTTCCTTATAAGAATGTGGAAACCTCTCCCTAGTAGACGCGTTTTAAAACGTGAGGCCGACGGTGATATGTAACGGGCCAAAATAGATAATATCTGCTAGCAGTGGGCTTGGGCTATTACAAATAGTATCAAAGCTAGACACCGGGCGATGTGCCAACGAAGACCCTGGGCCCCCAAGGGGGTGGATTGTGAGATTTCACATCGATTGGAGAGGAGGACGAAACATTCCTTATAAAGCTCGATACGATTTACCGATATGAGAACTCTATGCCTATAGAGTTTTCGAAGGAACAATACTACTAGTAATAAATCTGAAGTGCACAATGTATCTTAACATTATCAAGTAATACATTTAGAACATTTGCTGACAAATTAAAAGTGGGGAAAATAGCTAAAGTCGTTCGAATACAAAGATTTAAGGTCATTCACGGTGCCTCGAGCCGAGCCTAAAGGATTTCGCTGCATCTGAATCATTGAGTTCCTAATTGACAGGAAAGACAGGATCTTGCTGAAAGAGTAATGATCACACGTCTACATCTGTATGGCAAATGGGTGAAGGTATTACTATTGTTGTAATATTCCTTTGTGGGAAGACCATCATTTATATGGATGAAAACTATAAGTTTGCAAACAATTATTTCTTCTATGGTGTAGAAATGTAACCATGCTGAAATATACCAAGAGATCTCGAACGAAAATGTGGAATTGATGCGTGAACGCCTTATGGAGACTGTTATATGGCCTTCTGATGACACCAACACAGAGAAGATTGGCTAA

mRNA sequence

GTTAAGATTCATTCAACTTCATTTCCTCCTCCCCCTCACCTCTTCCAGCCTCCCGCCATTGCCCAAGAACGCTCTACGATTTCTAATCTCCGAATTCCTTCGCAACCCATTTCGAATCTCTGGCTGTTAATTCAGTGGTTCGATCTTGTTTTTCGAATCGATTCATTACGAGGGGTCGAATTTGATTGTGAAACGATGGTGAGGGGTTTATCTGTTGTGGGTTCATCGGTGGTGGACTCGCATACTTCCCCTTGTTTGTGTTTGGATGTTCTGCCCACAACGAGTATCAATCTCAAAAGTAGTGGGGATTTTGTTATGAAAAGGAATTCAATGGGTCGAAAGCGTTTGCCCAAACCAAAACACTTGGATCTAAGCAGCTCGTTCGTTGATGCTGGACGGGAATGGCTGCTCTCGGCGGATATGATAAACAGGAGTTCAAGGAAGCAGCACAAGAACAGAAGACTTGTGGTGATTGATGAACTTGGAGGGCAGTATGAAGACACCTTTGATGATGTTAAAATGCAAATACTTAATTATTTTACATACAAGGCTGTGAGGACTGTTATGAACCAACTGTATGAAATGAACCCTCCTACTTACAGGTGGCTTTATGATTTCGTCTTATCTAACAAGCCATCAGATGGAAAACATTTCATTCGCACACTTGTAAAGGAAAGACAGGATCTTGCTGAAAGAGTAATGATCACACGTCTACATCTGTATGGCAAATGGGTGAAGAAATGTAACCATGCTGAAATATACCAAGAGATCTCGAACGAAAATGTGGAATTGATGCGTGAACGCCTTATGGAGACTGTTATATGGCCTTCTGATGACACCAACACAGAGAAGATTGGCTAA

Coding sequence (CDS)

ATGGTGAGGGGTTTATCTGTTGTGGGTTCATCGGTGGTGGACTCGCATACTTCCCCTTGTTTGTGTTTGGATGTTCTGCCCACAACGAGTATCAATCTCAAAAGTAGTGGGGATTTTGTTATGAAAAGGAATTCAATGGGTCGAAAGCGTTTGCCCAAACCAAAACACTTGGATCTAAGCAGCTCGTTCGTTGATGCTGGACGGGAATGGCTGCTCTCGGCGGATATGATAAACAGGAGTTCAAGGAAGCAGCACAAGAACAGAAGACTTGTGGTGATTGATGAACTTGGAGGGCAGTATGAAGACACCTTTGATGATGTTAAAATGCAAATACTTAATTATTTTACATACAAGGCTGTGAGGACTGTTATGAACCAACTGTATGAAATGAACCCTCCTACTTACAGGTGGCTTTATGATTTCGTCTTATCTAACAAGCCATCAGATGGAAAACATTTCATTCGCACACTTGTAAAGGAAAGACAGGATCTTGCTGAAAGAGTAATGATCACACGTCTACATCTGTATGGCAAATGGGTGAAGAAATGTAACCATGCTGAAATATACCAAGAGATCTCGAACGAAAATGTGGAATTGATGCGTGAACGCCTTATGGAGACTGTTATATGGCCTTCTGATGACACCAACACAGAGAAGATTGGCTAA

Protein sequence

MVRGLSVVGSSVVDSHTSPCLCLDVLPTTSINLKSSGDFVMKRNSMGRKRLPKPKHLDLSSSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKAVRTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGKWVKKCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG

Homology

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BLAST of Carg17971 vs. NCBI nr
Match: XP_022926878.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucurbita moschata] >KAG7022086.1 Chaperonin-like RbcX protein 2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 450.3 bits (1157), Expect = 9.7e-123
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0


Query: 1   MVRGLSVVGSSVVDSHTSPCLCLDVLPTTSINLKSSGDFVMKRNSMGRKRLPKPKHLDLS 60
           MVRGLSVVGSSVVDSHTSPCLCLDVLPTTSINLKSSGDFVMKRNSMGRKRLPKPKHLDLS
Sbjct: 1   MVRGLSVVGSSVVDSHTSPCLCLDVLPTTSINLKSSGDFVMKRNSMGRKRLPKPKHLDLS 60

Query: 61  SSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKAV 120
           SSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKAV
Sbjct: 61  SSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKAV 120

Query: 121 RTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGKWV 180
           RTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGKWV
Sbjct: 121 RTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGKWV 180

Query: 181 KKCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG 222
           KKCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG
Sbjct: 181 KKCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG 221

[Close]

BLAST of Carg17971 vs. NCBI nr
Match: XP_022968239.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 446.8 bits (1148), Expect = 1.1e-121
Identity = 218/221 (98.64%), Postives = 221/221 (100.00%), Query Frame = 0


Query: 1   MVRGLSVVGSSVVDSHTSPCLCLDVLPTTSINLKSSGDFVMKRNSMGRKRLPKPKHLDLS 60
           MVRGLSVVGSSVVDSHTSPCLCLD+LPTTSINLKSSGDFVMK++SMGRKRLPKPKHLDLS
Sbjct: 1   MVRGLSVVGSSVVDSHTSPCLCLDILPTTSINLKSSGDFVMKKHSMGRKRLPKPKHLDLS 60

Query: 61  SSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKAV 120
           SSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKAV
Sbjct: 61  SSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKAV 120

Query: 121 RTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGKWV 180
           RTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGKWV
Sbjct: 121 RTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGKWV 180

Query: 181 KKCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG 222
           KKCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG
Sbjct: 181 KKCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG 221

[Close]

BLAST of Carg17971 vs. NCBI nr
Match: KAG6588188.1 (Chaperonin-like RbcX protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 446.0 bits (1146), Expect = 1.8e-121
Identity = 218/221 (98.64%), Postives = 221/221 (100.00%), Query Frame = 0


Query: 1   MVRGLSVVGSSVVDSHTSPCLCLDVLPTTSINLKSSGDFVMKRNSMGRKRLPKPKHLDLS 60
           MVRGLSVVGSSVVDSHTSPCLCLDVLPTTSINLKSSGDFVM+++SMGRKRLPKPKHLDLS
Sbjct: 1   MVRGLSVVGSSVVDSHTSPCLCLDVLPTTSINLKSSGDFVMRKHSMGRKRLPKPKHLDLS 60

Query: 61  SSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKAV 120
           SSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKAV
Sbjct: 61  SSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKAV 120

Query: 121 RTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGKWV 180
           RTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGKWV
Sbjct: 121 RTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGKWV 180

Query: 181 KKCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG 222
           KKCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG
Sbjct: 181 KKCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG 221

[Close]

BLAST of Carg17971 vs. NCBI nr
Match: XP_023530337.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 443.4 bits (1139), Expect = 1.2e-120
Identity = 216/221 (97.74%), Postives = 220/221 (99.55%), Query Frame = 0


Query: 1   MVRGLSVVGSSVVDSHTSPCLCLDVLPTTSINLKSSGDFVMKRNSMGRKRLPKPKHLDLS 60
           MVRGLSVVGSSVVDSHTSPCLCLDVLPTTSINLKSSGDFVM+++SMGRKRLPKPKH DLS
Sbjct: 1   MVRGLSVVGSSVVDSHTSPCLCLDVLPTTSINLKSSGDFVMRKHSMGRKRLPKPKHFDLS 60

Query: 61  SSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKAV 120
           SSFVDAGREWL+SADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKAV
Sbjct: 61  SSFVDAGREWLVSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKAV 120

Query: 121 RTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGKWV 180
           RTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGKWV
Sbjct: 121 RTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGKWV 180

Query: 181 KKCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG 222
           KKCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG
Sbjct: 181 KKCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG 221

[Close]

BLAST of Carg17971 vs. NCBI nr
Match: XP_038879928.1 (chaperonin-like RbcX protein 2, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 411.4 bits (1056), Expect = 5.0e-111
Identity = 203/222 (91.44%), Postives = 210/222 (94.59%), Query Frame = 0


Query: 1   MVRGLSVVGSSVVDSHTSPCLCLDVLPTTSINLKSSGDFVM-KRNSMGRKRLPKPKHLDL 60
           MV  LSVVGSSVVDSHTSPCLCLD LPTTSINLKS GDFVM K+N MGR RLPK KHLDL
Sbjct: 1   MVGALSVVGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVMKKKNLMGRNRLPKSKHLDL 60

Query: 61  SSSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKA 120
           SSSFVD GREWLLSADMINRSSRKQHKNRRLVV+DELGGQYED FDDVKMQILNYFTYKA
Sbjct: 61  SSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQYEDNFDDVKMQILNYFTYKA 120

Query: 121 VRTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGKW 180
           VRTVMNQLYEMNPP YRWLYDFVLSNKP+DGK+FIR LVKE+QDLAERVMITRLHLYGKW
Sbjct: 121 VRTVMNQLYEMNPPQYRWLYDFVLSNKPTDGKYFIRRLVKEQQDLAERVMITRLHLYGKW 180

Query: 181 VKKCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG 222
           VKKCNHAEIYQEIS+ENVELMRERLM+TVIWPSDDTNTEKIG
Sbjct: 181 VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222

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BLAST of Carg17971 vs. ExPASy Swiss-Prot
Match: Q8L9X2 (Chaperonin-like RbcX protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RBCX2 PE=1 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 2.0e-62
Identity = 121/217 (55.76%), Postives = 158/217 (72.81%), Query Frame = 0


Query: 1   MVRGLSVVGSSVVDSHTSPCLCLDVLPTTSINLKSSGDFVMKRNSMGRKRLPKPKHLDLS 60
           MV    VVGS V+DS +SPCLCLD   T +I  K              K L K ++L+L 
Sbjct: 1   MVSAWFVVGSPVMDSSSSPCLCLDAHTTGTIRRK--------------KILGKARNLELG 60

Query: 61  SSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKAV 120
           SSF  +   + LS   ++R + ++ K + L+V +++ G Y+DTF DV+ QI+NYFTYKAV
Sbjct: 61  SSFTGSRIVFRLSPKRVSRIANRKSK-KLLIVNEDVAGNYDDTFGDVQKQIVNYFTYKAV 120

Query: 121 RTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGKWV 180
           RTV++QLYEMNPP Y W Y+ +++N+P+DGK F+R L KE Q+LAERVMITRLHLYGKW+
Sbjct: 121 RTVLHQLYEMNPPQYTWFYNHIITNRPTDGKRFLRALGKESQELAERVMITRLHLYGKWI 180

Query: 181 KKCNHAEIYQEISNENVELMRERLMETVIWPSDDTNT 218
           KKC+H +IYQEIS+EN+ LMRERLMETVIWPSDDTN+
Sbjct: 181 KKCDHGKIYQEISDENLALMRERLMETVIWPSDDTNS 202

[Close]

BLAST of Carg17971 vs. ExPASy Swiss-Prot
Match: Q8DIS6 (RuBisCO chaperone RbcX OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rbcX PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.2e-08
Identity = 32/105 (30.48%), Postives = 50/105 (47.62%), Query Frame = 0


Query: 111 ILNYFTYKAVRTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMI 170
           +++Y TY+AVRTV+ QL E +PP   WL+ F       DG+ ++  L +E+ DL  R++ 
Sbjct: 14  LISYLTYQAVRTVIGQLAETDPPRSLWLHQFTSQESIQDGERYLEALFREQPDLGFRILT 73

Query: 171 TRLHL-----------------YGKWVKKCNHAEIYQEISNENVE 199
            R HL                      ++C   E   ++S  NVE
Sbjct: 74  VREHLAEMVADYLPEMLRAGIQQANLQQRCQQLERMTQVSEANVE 118

[Close]

BLAST of Carg17971 vs. ExPASy Swiss-Prot
Match: Q44212 (RuBisCO chaperone RbcX OS=Anabaena sp. (strain CA / ATCC 33047) OX=52271 GN=rbcX PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.8e-08
Identity = 35/99 (35.35%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 106 DVKMQILNYFTYKAVRTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLA 165
           D    + +Y TY+A+RTV+ QL E NPP   WL++F  + K  DG+ +I  L  E+ DLA
Sbjct: 9   DTAKTLQSYLTYQALRTVLAQLGETNPPLALWLHNF-SAGKVQDGEKYIEELFLEKPDLA 68

Query: 166 ERVMITRLHLYGKWVKKCNHAEIYQEISNENVELMRERL 205
            R+M  R H+  + + +     +   I   N+E  R+ L
Sbjct: 69  LRIMTVREHI-AEEIAEFLPEMVVTGIQQANMEKRRQHL 105

[Close]

BLAST of Carg17971 vs. ExPASy Swiss-Prot
Match: O86418 (RuBisCO chaperone RbcX OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rbcX PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.4e-07
Identity = 34/99 (34.34%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 106 DVKMQILNYFTYKAVRTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLA 165
           D    + +Y TY+A+ TV+ QL E NPP   WL+ F +  K  DG+ +++ L +E+ DLA
Sbjct: 9   DTAKTLQSYLTYQALMTVLAQLGETNPPLALWLHTFSV-GKVQDGEAYVKELFREQPDLA 68

Query: 166 ERVMITRLHLYGKWVKKCNHAEIYQEISNENVELMRERL 205
            R+M  R H+  + V +     +   I   N+E  R+ L
Sbjct: 69  LRIMTVREHI-AEEVAEFLPEMVRSGIQQANMEQRRQHL 105

[Close]

BLAST of Carg17971 vs. ExPASy Swiss-Prot
Match: Q55670 (RuBisCO chaperone RbcX OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rbcX PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 4.2e-04
Identity = 20/60 (33.33%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 113 NYFTYKAVRTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITR 172
           +Y TY+AV  + ++L E NPP   WL  ++ S+   +G+ F+  L+ E ++L  R++  R
Sbjct: 18  SYLTYQAVLRIQSELGETNPPQAIWLNQYLASHSIQNGETFLTELLDENKELVLRILAVR 77

[Close]

BLAST of Carg17971 vs. ExPASy TrEMBL
Match: A0A6J1EJF5 (chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111433858 PE=4 SV=1)

HSP 1 Score: 450.3 bits (1157), Expect = 4.7e-123
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0


Query: 1   MVRGLSVVGSSVVDSHTSPCLCLDVLPTTSINLKSSGDFVMKRNSMGRKRLPKPKHLDLS 60
           MVRGLSVVGSSVVDSHTSPCLCLDVLPTTSINLKSSGDFVMKRNSMGRKRLPKPKHLDLS
Sbjct: 1   MVRGLSVVGSSVVDSHTSPCLCLDVLPTTSINLKSSGDFVMKRNSMGRKRLPKPKHLDLS 60

Query: 61  SSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKAV 120
           SSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKAV
Sbjct: 61  SSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKAV 120

Query: 121 RTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGKWV 180
           RTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGKWV
Sbjct: 121 RTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGKWV 180

Query: 181 KKCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG 222
           KKCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG
Sbjct: 181 KKCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG 221

[Close]

BLAST of Carg17971 vs. ExPASy TrEMBL
Match: A0A6J1HZ31 (chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467533 PE=4 SV=1)

HSP 1 Score: 446.8 bits (1148), Expect = 5.2e-122
Identity = 218/221 (98.64%), Postives = 221/221 (100.00%), Query Frame = 0


Query: 1   MVRGLSVVGSSVVDSHTSPCLCLDVLPTTSINLKSSGDFVMKRNSMGRKRLPKPKHLDLS 60
           MVRGLSVVGSSVVDSHTSPCLCLD+LPTTSINLKSSGDFVMK++SMGRKRLPKPKHLDLS
Sbjct: 1   MVRGLSVVGSSVVDSHTSPCLCLDILPTTSINLKSSGDFVMKKHSMGRKRLPKPKHLDLS 60

Query: 61  SSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKAV 120
           SSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKAV
Sbjct: 61  SSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKAV 120

Query: 121 RTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGKWV 180
           RTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGKWV
Sbjct: 121 RTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGKWV 180

Query: 181 KKCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG 222
           KKCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG
Sbjct: 181 KKCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG 221

[Close]

BLAST of Carg17971 vs. ExPASy TrEMBL
Match: A0A6J1DJZ6 (chaperonin-like RbcX protein 2, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021602 PE=4 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 1.0e-109
Identity = 198/222 (89.19%), Postives = 210/222 (94.59%), Query Frame = 0


Query: 1   MVRGLSVVGSSVVDSHTSPCLCLDVLPTTSINLKSSGDFVMKRNSMGRKRLPKPKHLDLS 60
           MV  LSVVGSSVVDSHTSPCLCLD LPTTSINLKSSGDFVMK++SM R RLPKPKHLDLS
Sbjct: 1   MVGALSVVGSSVVDSHTSPCLCLDALPTTSINLKSSGDFVMKKSSMSRNRLPKPKHLDLS 60

Query: 61  SSFVDAGREWLLSADMINRSSRKQHKN-RRLVVIDELGGQYEDTFDDVKMQILNYFTYKA 120
           SSFVD GREWLLS DMINRSSRKQHKN RRLVV+DELGGQYED+F+DVK QILNYFTYKA
Sbjct: 61  SSFVDTGREWLLSVDMINRSSRKQHKNRRRLVVVDELGGQYEDSFEDVKTQILNYFTYKA 120

Query: 121 VRTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGKW 180
           VRTVMNQLYEMNPP YRWLYDFVL++KP++GK FIRTLVKERQDLAERVM+TRLHLYGKW
Sbjct: 121 VRTVMNQLYEMNPPQYRWLYDFVLTHKPAEGKRFIRTLVKERQDLAERVMVTRLHLYGKW 180

Query: 181 VKKCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG 222
           VKKCNHAEIYQEI +ENVE+MRERLMETVIWPSDDTNTEKIG
Sbjct: 181 VKKCNHAEIYQEILDENVEVMRERLMETVIWPSDDTNTEKIG 222

[Close]

BLAST of Carg17971 vs. ExPASy TrEMBL
Match: A0A5D3D5P8 (RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00500 PE=4 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 1.3e-109
Identity = 199/222 (89.64%), Postives = 209/222 (94.14%), Query Frame = 0


Query: 1   MVRGLSVVGSSVVDSHTSPCLCLDVLPTTSINLKSSGDFVMKRN-SMGRKRLPKPKHLDL 60
           MV  LS+VGSSVVDSHTSPCLCLD LPTTSINLKS GDFVMK+  SMGR+RLPKPKHLDL
Sbjct: 1   MVGALSMVGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVMKKKYSMGRQRLPKPKHLDL 60

Query: 61  SSSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKA 120
           SSSFVD G EWLLS DMINRSSRKQ KNRRLVV+DELGGQYED FDDVKMQ+LNYFTYKA
Sbjct: 61  SSSFVDNGLEWLLSVDMINRSSRKQTKNRRLVVVDELGGQYEDNFDDVKMQMLNYFTYKA 120

Query: 121 VRTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGKW 180
           VRTVMNQLYEMNPP YRWLYDFVL+NKP+DGKHFIR LVKE+QDLAERVMITRLHLYGKW
Sbjct: 121 VRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW 180

Query: 181 VKKCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG 222
           VKKCNHAEIYQEIS+ENVELMRERLM+TVIWPSDDTNTEKIG
Sbjct: 181 VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222

[Close]

BLAST of Carg17971 vs. ExPASy TrEMBL
Match: A0A1S3BNK3 (uncharacterized protein LOC103492031 OS=Cucumis melo OX=3656 GN=LOC103492031 PE=4 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 1.3e-109
Identity = 199/222 (89.64%), Postives = 209/222 (94.14%), Query Frame = 0


Query: 1   MVRGLSVVGSSVVDSHTSPCLCLDVLPTTSINLKSSGDFVMKRN-SMGRKRLPKPKHLDL 60
           MV  LS+VGSSVVDSHTSPCLCLD LPTTSINLKS GDFVMK+  SMGR+RLPKPKHLDL
Sbjct: 1   MVGALSMVGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVMKKKYSMGRQRLPKPKHLDL 60

Query: 61  SSSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKA 120
           SSSFVD G EWLLS DMINRSSRKQ KNRRLVV+DELGGQYED FDDVKMQ+LNYFTYKA
Sbjct: 61  SSSFVDNGLEWLLSVDMINRSSRKQTKNRRLVVVDELGGQYEDNFDDVKMQMLNYFTYKA 120

Query: 121 VRTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGKW 180
           VRTVMNQLYEMNPP YRWLYDFVL+NKP+DGKHFIR LVKE+QDLAERVMITRLHLYGKW
Sbjct: 121 VRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW 180

Query: 181 VKKCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG 222
           VKKCNHAEIYQEIS+ENVELMRERLM+TVIWPSDDTNTEKIG
Sbjct: 181 VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222

[Close]

BLAST of Carg17971 vs. TAIR 10
Match: AT5G19855.1 (Chaperonin-like RbcX protein )

HSP 1 Score: 240.4 bits (612), Expect = 1.4e-63
Identity = 121/217 (55.76%), Postives = 158/217 (72.81%), Query Frame = 0


Query: 1   MVRGLSVVGSSVVDSHTSPCLCLDVLPTTSINLKSSGDFVMKRNSMGRKRLPKPKHLDLS 60
           MV    VVGS V+DS +SPCLCLD   T +I  K              K L K ++L+L 
Sbjct: 1   MVSAWFVVGSPVMDSSSSPCLCLDAHTTGTIRRK--------------KILGKARNLELG 60

Query: 61  SSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKAV 120
           SSF  +   + LS   ++R + ++ K + L+V +++ G Y+DTF DV+ QI+NYFTYKAV
Sbjct: 61  SSFTGSRIVFRLSPKRVSRIANRKSK-KLLIVNEDVAGNYDDTFGDVQKQIVNYFTYKAV 120

Query: 121 RTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGKWV 180
           RTV++QLYEMNPP Y W Y+ +++N+P+DGK F+R L KE Q+LAERVMITRLHLYGKW+
Sbjct: 121 RTVLHQLYEMNPPQYTWFYNHIITNRPTDGKRFLRALGKESQELAERVMITRLHLYGKWI 180

Query: 181 KKCNHAEIYQEISNENVELMRERLMETVIWPSDDTNT 218
           KKC+H +IYQEIS+EN+ LMRERLMETVIWPSDDTN+
Sbjct: 181 KKCDHGKIYQEISDENLALMRERLMETVIWPSDDTNS 202

The following BLAST results are available for this feature:

BLAST of Carg17971 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022926878.1	9.7e-123	100.00	chaperonin-like RbcX protein 2, chloroplastic [Cucurbita moschata] >KAG7022086.1...	[more]
XP_022968239.1	1.1e-121	98.64	chaperonin-like RbcX protein 2, chloroplastic [Cucurbita maxima]	[more]
KAG6588188.1	1.8e-121	98.64	Chaperonin-like RbcX protein 2, chloroplastic, partial [Cucurbita argyrosperma s...	[more]
XP_023530337.1	1.2e-120	97.74	chaperonin-like RbcX protein 2, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_038879928.1	5.0e-111	91.44	chaperonin-like RbcX protein 2, chloroplastic isoform X1 [Benincasa hispida]	[more]

BLAST of Carg17971 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9X2	2.0e-62	55.76	Chaperonin-like RbcX protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q8DIS6	2.2e-08	30.48	RuBisCO chaperone RbcX OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 ...	[more]
Q44212	4.8e-08	35.35	RuBisCO chaperone RbcX OS=Anabaena sp. (strain CA / ATCC 33047) OX=52271 GN=rbcX...	[more]
O86418	1.4e-07	34.34	RuBisCO chaperone RbcX OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) O...	[more]
Q55670	4.2e-04	33.33	RuBisCO chaperone RbcX OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=111170...	[more]

BLAST of Carg17971 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EJF5	4.7e-123	100.00	chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1HZ31	5.2e-122	98.64	chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1DJZ6	1.0e-109	89.19	chaperonin-like RbcX protein 2, chloroplastic OS=Momordica charantia OX=3673 GN=...	[more]
A0A5D3D5P8	1.3e-109	89.64	RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3BNK3	1.3e-109	89.64	uncharacterized protein LOC103492031 OS=Cucumis melo OX=3656 GN=LOC103492031 PE=...	[more]

BLAST of Carg17971 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19855.1	1.4e-63	55.76	Chaperonin-like RbcX protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003435	Chaperonin-like RbcX	PFAM	PF02341	RcbX	coord: 109..207 e-value: 6.4E-20 score: 71.5
IPR003435	Chaperonin-like RbcX	PANTHER	PTHR33791	FAMILY NOT NAMED	coord: 1..221
IPR038052	Chaperonin-like RbcX superfamily	GENE3D	1.10.1200.210		coord: 93..218 e-value: 5.0E-49 score: 167.3
IPR038052	Chaperonin-like RbcX superfamily	SUPERFAMILY	158615	RbcX-like	coord: 99..218
None	No IPR available	PANTHER	PTHR33791:SF1	CHAPERONIN-LIKE RBCX PROTEIN 2, CHLOROPLASTIC	coord: 1..221

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17971-RA	Carg17971-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015977	carbon fixation
biological_process	GO:0015979	photosynthesis
biological_process	GO:0006457	protein folding
biological_process	GO:0110102	ribulose bisphosphate carboxylase complex assembly
molecular_function	GO:0044183	protein folding chaperone