Carg17969 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg17969
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Nuclear transcription factor Y subunit
Location	Carg_Chr11: 4171458 .. 4175780 (+)
RNA-Seq Expression	Carg17969
Synteny	Carg17969

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTAGCTGCTGAAAATTTTTCATTTTTGGAAATTCATAGAGTTTTTCAATTCACCTTCTTAAGGGATTAATTTCTACTCTCTGTTTTTCGATTTATTACAGACAATTCTCTCTATTTTCTCTTCGATCCTATTTGATTTTCCTGTTTTCTCCATTTCGACGTTGCTCCAATTCCCATCGGTAAGCAATTTTTCTTTTGGATTTCTATGGCTGTTTATCTGGTTTTTGATTTCTAGGGTATTCGCGCAATTCACTGTTTTAGGGCTTTAAATCTTCTTTTGGGTTTTGGGTTTGTGGGTGATCGATTGTTTTGGGATTTGGTTTGATTCTGCGATTGTTGGGGGAATTGGAGGCGATGATTGATGTGTTATCGATGAGAATTCCTGTTTTTCTTTTGGGTATTCTTTTTTTGCGTGGTAATCATGTGTCAGATTTTGTAACAGCTTTGAAACTGGATAAAGCATTTTGAAGATGATGATGAATAAAGGAACTGAAAATTTATGTTTCTTGATTCTTCCTAGGTCACTTTTGCATCGGATGGTTGAATAATTGAGAGTTTAGCTTACGAATTTTGATTTGCTGTTGATGGGAATTTAGTGCGTGGAAAATAGTTGTTATGTACTTAGTTACTACTTTTTTTTAAAGAAACCTAGACGCTATATGAAAGGGGATCAGTACTTAAGTGTAATTACCTGAGATTTGTTCTACTTTGTTATGTTAAATTTAATTTGTACCAAGTTTGTATGAACTGGTTCTATGTTTTGTTGGATCTTAGGAGGAGGTTAGGATGTTGGAAACGAACTGTTTGGGTATGCAACTTTCAGGTTTTACTTGTTGGTTCATTTGGTTCAACTGATTGTGAAAACGGGATCTACGTTAGTCTTATCGATTAGTTCAAGTTTTAACTTCGGATAGTTTCTAGTTTAGCTTTGTTTGATTTGCTTTTGTTGGTGGGACCAAATGCATTTGGAGCAAATCCTAGTTAGATTTCGATATGATATGGTTGATTGTATTTTGTTGACTGCATTTTTGTATTCTTTTTATGTCTTTTTGTTGCTACAACTTGGTGCCCTACATCATTAAATCAATTTTTGGAACATTAATCCCTAAATTTCAACTGAGTCACATATGGGAGAGTGTAGCCGTCCAGGAAAACTAAACTGAGTCACATATTGCATAAAACAAAAGGGATGTTGAACACAGTTTAGTCAAAAGGTACTGAAAAGATGTGATTTCACTGGACTGAATCATGAAAAGCATTTTTTCTTTATGTTTTTGTCCAAAGGTATTGGAAAGATGTAACAATACAGGATTGAATCATGAAGAACATCGTTTGAAATGTTCTTTTATGCCTCCTGCAGTTACTTTTTACTCCTTGCCCTTGTGAACTTGAAGGGACAAGAGGAATTTTTCCTAAAGAAAGAGATTGAATGAGTCTAGGAGCTCCCTAATTACCTGTGTTAGCTTTCAACTTCCTGTTGTGATGAGATTAGATTACAATTGAGAAGGAATAATACTTAAATTCTAACTGCGAATAGGAAAGGATGCTTTCTTCAATTATTGGTTATCAAAAAAATTTCACTCTGGTTATTAAGAACTCGAGGCTCTTTTGTTTTTCAAAGGGTTTGAAGGCATGCAGTCGAAATCCGAAACCAATAATCAGTTTGAATCTGATCCAAACGGTACTCCATCCACGAGTATCTATTACGAACCCTGGTGGCGTGGTATTGGATACAACCCTATTCCGCTACCTATGGTAGGGGGAAATGCTTCCAGTTCAACTTCTCTTGAATTCCCTAATGGTGGTTCAGAGTCGAACGATGGCCAGTCGGTGTCTAATAATGACGTCAATGATGAAGAAGATGTTTCCAAAGAAGTTCAAGCTACTGGATCTCCACATTCTGGTACATCATTACTCCTTTAACCATTAAAGTACTGAACAGTCTTTTAGCTTTTCTGTTTTGTGCCTGACAATATTGAATCTTATCTTCTTTAGAGGTGTTATTATGAAATTGGAGGCTTGCTTTAGGACTCAAAACTTCACTCTGTCTGGATCATTTTTTGAAACTATTTTAAGAAGAAATAAATACGGCAAGAGAGTGGCCGTTGTGTGTGTTTTTTTCAAAACAACCACCAAATATGCCCTTATAACAATTACATCTTCTAATTTCAGCTGGAAATTACAGACAGGCTGCTCAGAAGATGCAGCATGTTTCATCTACTTTTCCAGTAATGCATGGTGAATGTCTGATGCAGTCGACACAACTCGAACTTGTAGGCCACTCTATTGTATGTTCCATTGCTGTCTAATCTTAGAAAACGCTTTATGTTCTAACAATTTTCGAGCTTTTAGTCCCAAAGTTAAAGATTCCATTAAAAAATTGGTCAAGTTATGTTTTATAATTACATGACTGAAGAACTTCCTGTGTCTTTTGTGGTACTATTGCAGGCATGTGCGTCAAACCCATATCAGGATCCATCTTATGGAGGAATGATGGCTTTTTATGGCCATCAGCCTTTGGTATGTTATTAACTCAAATTTCGTACAAACGAGTGAGTGGTTTCACTGTTTTAGCTTCTTTTCCATTACTTGGCTGTGCTCATCTTCCATAGCTGTTGAAATTAAAATCCGAAGGACACAGAACAGGGCTTTTGACCCTCTTAAGAGATGGAACTTCAAATCCGAGAACAAAAGTGTGAGATCCCACATTGATGGGAGAGGGGAAGGAAACATTCCTTATAAGGGAGTAGAGACCTCTTCTTAGTAGACGCATTTTAAAATCTTAAGGGAAATCCCGAAAGGGCAAGCCCAAAAAGAACAATATTTGCTAGCGATGGGTTTGGCTATTACAAATTGTATCAGAGCCAGACATCGGACGGTGTACGAACGAGTACGCTAGGCCCCTGAGAGGAGTGGATTGTAAGATCCCACATTGGTTGGAGAGGAGAACGAAAAATTTCTTATAAGGGTGTGGAAACCTCTTCCTAGAAGACGCCTTGAGGGGGAATTTCGAAAGGGCAAACCTAAAGAGGACAATATCTGCTAGCAGTGGTCTTGGGCTGTTTCAAAAAGGATCATGCTCTACCTTCATGAAAAATTGTGTTTGTGCATTCAAACCTGCCAAACTCAATTGGTTTGTTGTCATACATCTGTTTAAATTTTGCTTTTACTTCTGGTTCTGGGGTCGTTTTCGTGGACAGTTCCTGAAATATTATGCTGACTGTTGAGTGGTTAATGCTGATGATTTGAATTAGGACCTGTATTTGTACATGTAATACTCTCCCATCGTGAATGGCTCGAAGAACAATGCTTCTCAGTTTACATTTTCTCAACAAATCTTGTTACTTACAGTGTAGTTTGTCTGCAGGGATTTTAACACTGTTCTTCAATCTTTTAAATTTTTAATGAAGGTTTTTTTTTTTGTATAACCCTAGAAGAAAATTGATTATATGTGATCATTTATTGTGTCCAGTATAGCTTCAGAATACACAGAGAGCTGACATTTTCATTGTACAAGACTTTAATGACAAAAATCTCATGCTTAGGTAGTAACTTCAAATATTTCTCATATACAGGGCTATCCTATGGTCGGAATGCCACATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTATTGGTGAATGCGAAGCAGTACCAAGGAATTTTGAGGAGAAGGCAAGCGCGTGCAAAAGCCGAGGCTGAGAAGAAGTCGATAAAAGCCAGAAAGGTGGATTTCGTATCTTTTTGAGAATGATCAATCTTTTAAACAACTCATCAAATCAAGATTTATATGCCCTGAATAGACAATATTGATGGTTAGCACCTGGGATATAGATTTAGGTTGTACTGTAATGGACCATGTTCAATATCTTATAACACTGAACTGCCATGAAATAGTTCTGCTGTGGTTCTGTCTGCTATCTAAACTAGTTCAATCAATCTATTCAGAAGTTGTTAGTTAATAACTATAGATACAAAGGAGTTATTTATACCAAACGCTTATGGTTAAGCATGTTACAACCACTTAATTGTTATAGATACTCACTCGAACTCGAACTCAGCTTAGAATATACACAAGAGTTCAATTTTTGGCTATGCTGCTCACTTTTCTTATTCAACAGCCATATCTTCATGAGTCTAGACACCAGCATGCCATAAGAAGGACAAGGGGTAGCGGAGGGCGTTTCACCAAGAAAAACGAAGCTGATGGAAAGGAGATGCATTCTGATGAAGTAAATGAGAATGGTCGCCATCTAAATGACGGTTCTAAACAGCAGAATGGAAGCTCCTTGACGAACATGGCCTCTGAGTAG

mRNA sequence

CTTAGCTGCTGAAAATTTTTCATTTTTGGAAATTCATAGAGTTTTTCAATTCACCTTCTTAAGGGATTAATTTCTACTCTCTGTTTTTCGATTTATTACAGACAATTCTCTCTATTTTCTCTTCGATCCTATTTGATTTTCCTGTTTTCTCCATTTCGACGTTGCTCCAATTCCCATCGGAGGAGGTTAGGATGTTGGAAACGAACTGTTTGGGTATGCAACTTTCAGGGTTTGAAGGCATGCAGTCGAAATCCGAAACCAATAATCAGTTTGAATCTGATCCAAACGGTACTCCATCCACGAGTATCTATTACGAACCCTGGTGGCGTGGTATTGGATACAACCCTATTCCGCTACCTATGGTAGGGGGAAATGCTTCCAGTTCAACTTCTCTTGAATTCCCTAATGGTGGTTCAGAGTCGAACGATGGCCAGTCGGTGTCTAATAATGACGTCAATGATGAAGAAGATGTTTCCAAAGAAGTTCAAGCTACTGGATCTCCACATTCTGCTGGAAATTACAGACAGGCTGCTCAGAAGATGCAGCATGTTTCATCTACTTTTCCAGTAATGCATGGTGAATGTCTGATGCAGTCGACACAACTCGAACTTGTAGGCCACTCTATTGCATGTGCGTCAAACCCATATCAGGATCCATCTTATGGAGGAATGATGGCTTTTTATGGCCATCAGCCTTTGGGCTATCCTATGGTCGGAATGCCACATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTATTGGTGAATGCGAAGCAGTACCAAGGAATTTTGAGGAGAAGGCAAGCGCGTGCAAAAGCCGAGGCTGAGAAGAAGTCGATAAAAGCCAGAAAGGTGGATTTCCCATATCTTCATGAGTCTAGACACCAGCATGCCATAAGAAGGACAAGGGGTAGCGGAGGGCGTTTCACCAAGAAAAACGAAGCTGATGGAAAGGAGATGCATTCTGATGAAGTAAATGAGAATGGTCGCCATCTAAATGACGGTTCTAAACAGCAGAATGGAAGCTCCTTGACGAACATGGCCTCTGAGTAG

Coding sequence (CDS)

ATGTTGGAAACGAACTGTTTGGGTATGCAACTTTCAGGGTTTGAAGGCATGCAGTCGAAATCCGAAACCAATAATCAGTTTGAATCTGATCCAAACGGTACTCCATCCACGAGTATCTATTACGAACCCTGGTGGCGTGGTATTGGATACAACCCTATTCCGCTACCTATGGTAGGGGGAAATGCTTCCAGTTCAACTTCTCTTGAATTCCCTAATGGTGGTTCAGAGTCGAACGATGGCCAGTCGGTGTCTAATAATGACGTCAATGATGAAGAAGATGTTTCCAAAGAAGTTCAAGCTACTGGATCTCCACATTCTGCTGGAAATTACAGACAGGCTGCTCAGAAGATGCAGCATGTTTCATCTACTTTTCCAGTAATGCATGGTGAATGTCTGATGCAGTCGACACAACTCGAACTTGTAGGCCACTCTATTGCATGTGCGTCAAACCCATATCAGGATCCATCTTATGGAGGAATGATGGCTTTTTATGGCCATCAGCCTTTGGGCTATCCTATGGTCGGAATGCCACATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTATTGGTGAATGCGAAGCAGTACCAAGGAATTTTGAGGAGAAGGCAAGCGCGTGCAAAAGCCGAGGCTGAGAAGAAGTCGATAAAAGCCAGAAAGGTGGATTTCCCATATCTTCATGAGTCTAGACACCAGCATGCCATAAGAAGGACAAGGGGTAGCGGAGGGCGTTTCACCAAGAAAAACGAAGCTGATGGAAAGGAGATGCATTCTGATGAAGTAAATGAGAATGGTCGCCATCTAAATGACGGTTCTAAACAGCAGAATGGAAGCTCCTTGACGAACATGGCCTCTGAGTAG

Protein sequence

MLETNCLGMQLSGFEGMQSKSETNNQFESDPNGTPSTSIYYEPWWRGIGYNPIPLPMVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDVSKEVQATGSPHSAGNYRQAAQKMQHVSSTFPVMHGECLMQSTQLELVGHSIACASNPYQDPSYGGMMAFYGHQPLGYPMVGMPHARMPLPIEIAQDPVLVNAKQYQGILRRRQARAKAEAEKKSIKARKVDFPYLHESRHQHAIRRTRGSGGRFTKKNEADGKEMHSDEVNENGRHLNDGSKQQNGSSLTNMASE

Homology

[Close]

BLAST of Carg17969 vs. NCBI nr
Match: KAG7022088.1 (Nuclear transcription factor Y subunit A-9 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 572.0 bits (1473), Expect = 2.9e-159
Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 0


Query: 1   MLETNCLGMQLSGFEGMQSKSETNNQFESDPNGTPSTSIYYEPWWRGIGYNPIPLPMVGG 60
           MLETNCLGMQLSGFEGMQSKSETNNQFESDPNGTPSTSIYYEPWWRGIGYNPIPLPMVGG
Sbjct: 1   MLETNCLGMQLSGFEGMQSKSETNNQFESDPNGTPSTSIYYEPWWRGIGYNPIPLPMVGG 60

Query: 61  NASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDVSKEVQATGSPHSAGNYRQAAQKMQHV 120
           NASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDVSKEVQATGSPHSAGNYRQAAQKMQHV
Sbjct: 61  NASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDVSKEVQATGSPHSAGNYRQAAQKMQHV 120

Query: 121 SSTFPVMHGECLMQSTQLELVGHSIACASNPYQDPSYGGMMAFYGHQPLGYPMVGMPHAR 180
           SSTFPVMHGECLMQSTQLELVGHSIACASNPYQDPSYGGMMAFYGHQPLGYPMVGMPHAR
Sbjct: 121 SSTFPVMHGECLMQSTQLELVGHSIACASNPYQDPSYGGMMAFYGHQPLGYPMVGMPHAR 180

Query: 181 MPLPIEIAQDPVLVNAKQYQGILRRRQARAKAEAEKKSIKARKVDFPYLHESRHQHAIRR 240
           MPLPIEIAQDPVLVNAKQYQGILRRRQARAKAEAEKKSIKARKVDFPYLHESRHQHAIRR
Sbjct: 181 MPLPIEIAQDPVLVNAKQYQGILRRRQARAKAEAEKKSIKARKVDFPYLHESRHQHAIRR 240

Query: 241 TRGSGGRFTKKNEADGKEMHSDEVNENGRHLNDGSKQQNGSSLTNMASE 290
           TRGSGGRFTKKNEADGKEMHSDEVNENGRHLNDGSKQQNGSSLTNMASE
Sbjct: 241 TRGSGGRFTKKNEADGKEMHSDEVNENGRHLNDGSKQQNGSSLTNMASE 289

[Close]

BLAST of Carg17969 vs. NCBI nr
Match: XP_022968054.1 (nuclear transcription factor Y subunit A-1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 522.7 bits (1345), Expect = 2.0e-144
Identity = 267/273 (97.80%), Postives = 269/273 (98.53%), Query Frame = 0


Query: 17  MQSKSETNNQFESDPNGTPSTSIYYEPWWRGIGYNPIPLPMVGGNASSSTSLEFPNGGSE 76
           MQSKSETNNQFESDPNGTPSTSIYYEPWWRGIGYNPIPLP+VGGN+SSSTSLEFPNGGSE
Sbjct: 1   MQSKSETNNQFESDPNGTPSTSIYYEPWWRGIGYNPIPLPVVGGNSSSSTSLEFPNGGSE 60

Query: 77  SNDGQSVSNNDVNDEEDVSKEVQATGSPHSAGNYRQAAQKMQHVSSTFPVMHGECLMQST 136
           SNDGQSVSNNDVNDEEDVSKEVQATGSPHSAGNYRQAAQKMQHVSSTFPVMHGECLMQST
Sbjct: 61  SNDGQSVSNNDVNDEEDVSKEVQATGSPHSAGNYRQAAQKMQHVSSTFPVMHGECLMQST 120

Query: 137 QLELVGHSIACASNPYQDPSYGGMMAFYGHQPLGYPMVGMPHARMPLPIEIAQDPVLVNA 196
           QLELVGHSIACASNPYQDPSYGGMMAFYGHQPLGYP VGMPHARMPLPIEIAQDPVLVNA
Sbjct: 121 QLELVGHSIACASNPYQDPSYGGMMAFYGHQPLGYPTVGMPHARMPLPIEIAQDPVLVNA 180

Query: 197 KQYQGILRRRQARAKAEAEKKSIKARKVDFPYLHESRHQHAIRRTRGSGGRFTKKNEADG 256
           KQYQGILRRRQARAKAEAEKKSIKARK   PYLHESRHQHAIRRTRGSGGRFTKKNEADG
Sbjct: 181 KQYQGILRRRQARAKAEAEKKSIKARK---PYLHESRHQHAIRRTRGSGGRFTKKNEADG 240

Query: 257 KEMHSDEVNENGRHLNDGSKQQNGSSLTNMASE 290
           KEMHSDEVNENGRHLNDGSKQQNGSSLTNMASE
Sbjct: 241 KEMHSDEVNENGRHLNDGSKQQNGSSLTNMASE 270

[Close]

BLAST of Carg17969 vs. NCBI nr
Match: XP_022926860.1 (nuclear transcription factor Y subunit A-1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 521.9 bits (1343), Expect = 3.4e-144
Identity = 269/274 (98.18%), Postives = 270/274 (98.54%), Query Frame = 0


Query: 17  MQSKSETNNQFESDPNGTPSTSIYYEPWWRGIGYNPIPLPMVGGNASSSTSLEFPNGGSE 76
           MQSKSETNNQFESDPNGTPSTSIYYEPWWRGIGYNPIPLPMVGGNASSSTSLEFPNGGSE
Sbjct: 1   MQSKSETNNQFESDPNGTPSTSIYYEPWWRGIGYNPIPLPMVGGNASSSTSLEFPNGGSE 60

Query: 77  SNDGQSVSNNDVNDEEDVSKEVQATGSPHSAGNYRQAAQKMQHVSSTFPVMHGECLMQST 136
           SNDGQSVSNNDVNDEEDVSKEVQATGSPHSAGNYRQAAQKMQHVSSTFPVMHGECLMQST
Sbjct: 61  SNDGQSVSNNDVNDEEDVSKEVQATGSPHSAGNYRQAAQKMQHVSSTFPVMHGECLMQST 120

Query: 137 QLELVGHSIACASNPYQDPSYGGMMAFYGHQPLGYPMVGMPHARMPLPIEIAQDPVLVNA 196
           QLELVGHSIACASNPYQDPSYGGMMAFYGHQPLGYPMVGMPHARMPLPIEIAQDPVLVNA
Sbjct: 121 QLELVGHSIACASNPYQDPSYGGMMAFYGHQPLGYPMVGMPHARMPLPIEIAQDPVLVNA 180

Query: 197 KQYQGILRRRQARAKAEAEKKSIKARKVDFPYLHESRHQHAIRRTRGSGGRFTKKNEA-D 256
           KQYQGILRRRQARAKAEAEKKSIKARK   PYLHESRHQHAIRRTRGSGGRFTKKNEA D
Sbjct: 181 KQYQGILRRRQARAKAEAEKKSIKARK---PYLHESRHQHAIRRTRGSGGRFTKKNEADD 240

Query: 257 GKEMHSDEVNENGRHLNDGSKQQNGSSLTNMASE 290
           GKEMHSDEVNENGRHLNDGSKQQNGSSLTNMAS+
Sbjct: 241 GKEMHSDEVNENGRHLNDGSKQQNGSSLTNMASD 271

[Close]

BLAST of Carg17969 vs. NCBI nr
Match: XP_023530428.1 (nuclear transcription factor Y subunit A-1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 520.4 bits (1339), Expect = 1.0e-143
Identity = 267/273 (97.80%), Postives = 268/273 (98.17%), Query Frame = 0


Query: 17  MQSKSETNNQFESDPNGTPSTSIYYEPWWRGIGYNPIPLPMVGGNASSSTSLEFPNGGSE 76
           MQSKSETN+QFESDPNGTPSTSIYYEPWWRGIGYNPIPLPMVGGNASSSTSLEF NGGSE
Sbjct: 1   MQSKSETNSQFESDPNGTPSTSIYYEPWWRGIGYNPIPLPMVGGNASSSTSLEFANGGSE 60

Query: 77  SNDGQSVSNNDVNDEEDVSKEVQATGSPHSAGNYRQAAQKMQHVSSTFPVMHGECLMQST 136
           SNDGQSVSNNDVNDEEDVSKEVQATGSPHSAGNYRQAAQKMQHVSSTFPVMHGECLMQST
Sbjct: 61  SNDGQSVSNNDVNDEEDVSKEVQATGSPHSAGNYRQAAQKMQHVSSTFPVMHGECLMQST 120

Query: 137 QLELVGHSIACASNPYQDPSYGGMMAFYGHQPLGYPMVGMPHARMPLPIEIAQDPVLVNA 196
           QLELVGHSIACASNPYQDPSYGGMMAFYGHQPLGYPMVGMPHARMPLPIEIAQDPVLVNA
Sbjct: 121 QLELVGHSIACASNPYQDPSYGGMMAFYGHQPLGYPMVGMPHARMPLPIEIAQDPVLVNA 180

Query: 197 KQYQGILRRRQARAKAEAEKKSIKARKVDFPYLHESRHQHAIRRTRGSGGRFTKKNEADG 256
           KQYQGILRRRQARAKAEAEKK IKARK   PYLHESRHQHAIRRTRGSGGRFTKKNEADG
Sbjct: 181 KQYQGILRRRQARAKAEAEKKLIKARK---PYLHESRHQHAIRRTRGSGGRFTKKNEADG 240

Query: 257 KEMHSDEVNENGRHLNDGSKQQNGSSLTNMASE 290
           KEMHSDEVNENGRHLNDGSKQQNGSSLTNMASE
Sbjct: 241 KEMHSDEVNENGRHLNDGSKQQNGSSLTNMASE 270

[Close]

BLAST of Carg17969 vs. NCBI nr
Match: KAG6588190.1 (Nuclear transcription factor Y subunit A-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 515.8 bits (1327), Expect = 2.5e-142
Identity = 265/273 (97.07%), Postives = 266/273 (97.44%), Query Frame = 0


Query: 17  MQSKSETNNQFESDPNGTPSTSIYYEPWWRGIGYNPIPLPMVGGNASSSTSLEFPNGGSE 76
           MQSKSETNNQFESDPNGTPSTSIYYEPWW GIGYNPIPLPMVGGNASSSTSLEF NGGSE
Sbjct: 1   MQSKSETNNQFESDPNGTPSTSIYYEPWWLGIGYNPIPLPMVGGNASSSTSLEFANGGSE 60

Query: 77  SNDGQSVSNNDVNDEEDVSKEVQATGSPHSAGNYRQAAQKMQHVSSTFPVMHGECLMQST 136
           SNDGQSVSNND+NDEEDVSKEVQATGSPHSAGNYRQAAQKMQHVSSTFPVMHGECLMQST
Sbjct: 61  SNDGQSVSNNDINDEEDVSKEVQATGSPHSAGNYRQAAQKMQHVSSTFPVMHGECLMQST 120

Query: 137 QLELVGHSIACASNPYQDPSYGGMMAFYGHQPLGYPMVGMPHARMPLPIEIAQDPVLVNA 196
           QLELVGHSIACASNPYQDPS GGMMAFYGHQPLGYPMVGMPHARMPLPIEIAQDPVLVNA
Sbjct: 121 QLELVGHSIACASNPYQDPSCGGMMAFYGHQPLGYPMVGMPHARMPLPIEIAQDPVLVNA 180

Query: 197 KQYQGILRRRQARAKAEAEKKSIKARKVDFPYLHESRHQHAIRRTRGSGGRFTKKNEADG 256
           KQYQGILRRRQARAKAEAEKK IKARK   PYLHESRHQHAIRRTRGSGGRFTKKNEADG
Sbjct: 181 KQYQGILRRRQARAKAEAEKKLIKARK---PYLHESRHQHAIRRTRGSGGRFTKKNEADG 240

Query: 257 KEMHSDEVNENGRHLNDGSKQQNGSSLTNMASE 290
           KEMHSDEVNENGRHLNDGSKQQNGSSLTNMASE
Sbjct: 241 KEMHSDEVNENGRHLNDGSKQQNGSSLTNMASE 270

[Close]

BLAST of Carg17969 vs. ExPASy Swiss-Prot
Match: Q9LXV5 (Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana OX=3702 GN=NFYA1 PE=2 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 6.9e-47
Identity = 124/266 (46.62%), Postives = 161/266 (60.53%), Query Frame = 0


Query: 17  MQSKSETNNQFE-SDPNGTPSTSIYYEPWWRGIGYNPIPLPMVGGNASSSTSLEFPNGGS 76
           MQSK    N+ E ++ +      +Y EPWW+   +  +P     G  S+S+SL+ PN GS
Sbjct: 1   MQSKPGRENEEEVNNHHAVQQPMMYAEPWWKNNSFGVVPQARPSGIPSNSSSLDCPN-GS 60

Query: 77  ESNDGQSVSNND-VNDEEDVS-KEVQATGSPHSAGNYRQAAQKMQHVSSTFPVMHGECLM 136
           ESND  S S +  +N E D + K+ QA  S  S  N+     +    + +   MH + L+
Sbjct: 61  ESNDVHSASEDGALNGENDGTWKDSQAATSSRSVDNH---GMEGNDPALSIRNMHDQPLV 120

Query: 137 QSTQLELVGHSIACASNPYQDPSYGGMMAFYGHQPLGY-PMVGMPHARMPLPIEIAQDPV 196
           Q    ELVGH IAC  NPYQDP YGG+M  YGHQ LG+ P +GMP  R  LP+++AQ+PV
Sbjct: 121 QPP--ELVGHYIACVPNPYQDPYYGGLMGAYGHQQLGFRPYLGMPRERTALPLDMAQEPV 180

Query: 197 LVNAKQYQGILRRRQARAKAEAEKKSIKARKVDFPYLHESRHQHAIRRTRGSGGRFTKKN 256
            VNAKQY+GILRRR+ARAKAE E+K I+ RK   PYLHESRH+HA+RR R SGGRF KK+
Sbjct: 181 YVNAKQYEGILRRRKARAKAELERKVIRDRK---PYLHESRHKHAMRRARASGGRFAKKS 240

Query: 257 EADGKEMHSDEVNENGRHLNDGSKQQ 279
           E +  E       E G   N    +Q
Sbjct: 241 EVEAGEDAGGRDRERGSATNSSGSEQ 257

[Close]

BLAST of Carg17969 vs. ExPASy Swiss-Prot
Match: Q945M9 (Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana OX=3702 GN=NFYA9 PE=1 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.5e-46
Identity = 132/272 (48.53%), Postives = 161/272 (59.19%), Query Frame = 0


Query: 13  GFEGMQSKSET-NNQFESDPNGTPSTSI-YYEPWWR-GIGYNPIPLPMVGGNASSSTSLE 72
           G E M SKS++  N+ +S+ +GT S+SI    PW R     N       G  +S S +L 
Sbjct: 2   GIEDMHSKSDSGGNKVDSEVHGTVSSSINSLNPWHRAAAACNANSSVEAGDKSSKSIALA 61

Query: 73  FPNGGSESNDGQSVSNNDVNDEEDVSKEVQATGSPHSAGNYRQAAQKMQHVSSTFPVMHG 132
                 ESN  +S SN D      V+KE Q T SP SAG+Y    Q+  H   T P  H 
Sbjct: 62  L-----ESNGSKSPSNRD----NTVNKESQVTTSPQSAGDYSDKNQESLHHGITQPPPHP 121

Query: 133 ECLMQSTQLELVGHSIACA-SNPYQDPSYGGMMAFYGHQPLGY-PMVGMPHARMPLPIEI 192
                    +LVGH++  A SNPYQDP Y G+M  YGH PLG+ P  GMPH+RMPLP E+
Sbjct: 122 ---------QLVGHTVGWASSNPYQDPYYAGVMGAYGHHPLGFVPYGGMPHSRMPLPPEM 181

Query: 193 AQDPVLVNAKQYQGILRRRQARAKAEAEKKSIKARKVDFPYLHESRHQHAIRRTRGSGGR 252
           AQ+PV VNAKQYQ ILRRRQARAKAE EKK IK+RK   PYLHESRHQHA+RR RG+GGR
Sbjct: 182 AQEPVFVNAKQYQAILRRRQARAKAELEKKLIKSRK---PYLHESRHQHAMRRPRGTGGR 241

Query: 253 FTKKNEADGKEMHSDEVNENGRHLNDGSKQQN 280
           F KK   +  +  ++E   NG H+       N
Sbjct: 242 FAKKTNTEASKRKAEE-KSNG-HVTQSPSSSN 250

[Close]

BLAST of Carg17969 vs. ExPASy Swiss-Prot
Match: Q8VY64 (Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana OX=3702 GN=NFYA4 PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.1e-20
Identity = 74/176 (42.05%), Postives = 93/176 (52.84%), Query Frame = 0


Query: 101 TGSPHS-AGNYRQAAQKMQHVSSTFP-VMHGECLMQSTQLELVGHSIACASNPYQDPSYG 160
           T S H  + N    A+K +  S T P V  G          +    +A    PY DP Y 
Sbjct: 2   TSSVHELSDNNESHAKKERPDSQTRPQVPSGRSSESIDTNSVYSEPMAHGLYPYPDPYYR 61

Query: 161 GMMAFYGHQPLGYP-----MVGMPHARMPLPIEIAQDPVLVNAKQYQGILRRRQARAKAE 220
            + A   + P  YP     ++GM    +PL  +  ++PV VNAKQY GILRRRQ+RAK E
Sbjct: 62  SVFAQQAYLPHPYPGVQLQLMGMQQPGVPLQCDAVEEPVFVNAKQYHGILRRRQSRAKLE 121

Query: 221 AEKKSIKARKVDFPYLHESRHQHAIRRTRGSGGRF--TKKNEADGKEMHSDEVNEN 268
           A  ++IKA+K   PY+HESRH HAIRR RG GGRF   KK   D KE      +EN
Sbjct: 122 ARNRAIKAKK---PYMHESRHLHAIRRPRGCGGRFLNAKKENGDHKEEEEATSDEN 174

[Close]

BLAST of Carg17969 vs. ExPASy Swiss-Prot
Match: Q84JP1 (Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana OX=3702 GN=NFYA7 PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.2e-19
Identity = 72/183 (39.34%), Postives = 99/183 (54.10%), Query Frame = 0


Query: 108 GNYRQAAQKMQHVSSTFP-VMHGECLMQSTQLELVG--HSIACASNPYQDPSYGGMMAFY 167
           G++ +  Q+  H     P   + E ++ S      G  +S+A    PY DP Y  + A  
Sbjct: 13  GSHEKQEQRDSHFQPPIPSARNYESIVTSLVYSDPGTTNSMAPGQYPYPDPYYRSIFAPP 72

Query: 168 GHQPLG--YPMVGMPHARMPLPIEIAQDPVLVNAKQYQGILRRRQARAKAEAEKKSIKAR 227
                G    ++G+    +PLP +  ++PV VNAKQY GILRRRQ+RA+ E++ K IK+R
Sbjct: 73  PQPYTGVHLQLMGVQQQGVPLPSDAVEEPVFVNAKQYHGILRRRQSRARLESQNKVIKSR 132

Query: 228 KVDFPYLHESRHQHAIRRTRGSGGRFTKKNEADGKEMHSDEVNENGRHLNDGSKQQNGSS 286
           K   PYLHESRH HAIRR RG GGRF    + D  E H D  +E   +L+ G      SS
Sbjct: 133 K---PYLHESRHLHAIRRPRGCGGRFLNAKKED--EHHEDSSHEEKSNLSAGKSAMAASS 190

[Close]

BLAST of Carg17969 vs. ExPASy Swiss-Prot
Match: Q93ZH2 (Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana OX=3702 GN=NFYA3 PE=2 SV=2)

HSP 1 Score: 93.2 bits (230), Expect = 5.2e-18
Identity = 84/225 (37.33%), Postives = 112/225 (49.78%), Query Frame = 0


Query: 60  GNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDVSKEVQATGSPHSAGNYRQ----AAQ 119
           G+  ++  + F +  S S      S  +V    D +   Q + S  S     Q    A+ 
Sbjct: 53  GHIQTTKQISFQDQDSSSTQSTGQSYTEVASSGDDNPSRQISFSAKSGSEITQRKGFASN 112

Query: 120 KMQHVSSTFPVMHGECLMQSTQLELVGHSIACASNPYQDPSYGGMMA--FYGHQPLGYP- 179
             Q   + FP +H        Q     H        Y DP YGG++A  +    P   P 
Sbjct: 113 PKQGSMTGFPNIH----FAPAQANFSFH--------YADPHYGGLLAATYLPQAPTCNPQ 172

Query: 180 MVGMPHARMPLPIEIAQ-DPVLVNAKQYQGILRRRQARAKAEAEKKSIKARKVDFPYLHE 239
           MV M   R+PLP E+ + DPV VNAKQY  I+RRRQ RAK EA+ K I+ARK   PYLHE
Sbjct: 173 MVSMIPGRVPLPAELTETDPVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARK---PYLHE 232

Query: 240 SRHQHAIRRTRGSGGRF--TKK--NEADGKEMHSDEVNENGRHLN 273
           SRH HA++R RGSGGRF  TKK   E++       E ++ G+ +N
Sbjct: 233 SRHVHALKRPRGSGGRFLNTKKLLQESEQAAAREQEQDKLGQQVN 262

[Close]

BLAST of Carg17969 vs. ExPASy TrEMBL
Match: A0A6J1HYH4 (Nuclear transcription factor Y subunit OS=Cucurbita maxima OX=3661 GN=LOC111467408 PE=3 SV=1)

HSP 1 Score: 522.7 bits (1345), Expect = 9.7e-145
Identity = 267/273 (97.80%), Postives = 269/273 (98.53%), Query Frame = 0


Query: 17  MQSKSETNNQFESDPNGTPSTSIYYEPWWRGIGYNPIPLPMVGGNASSSTSLEFPNGGSE 76
           MQSKSETNNQFESDPNGTPSTSIYYEPWWRGIGYNPIPLP+VGGN+SSSTSLEFPNGGSE
Sbjct: 1   MQSKSETNNQFESDPNGTPSTSIYYEPWWRGIGYNPIPLPVVGGNSSSSTSLEFPNGGSE 60

Query: 77  SNDGQSVSNNDVNDEEDVSKEVQATGSPHSAGNYRQAAQKMQHVSSTFPVMHGECLMQST 136
           SNDGQSVSNNDVNDEEDVSKEVQATGSPHSAGNYRQAAQKMQHVSSTFPVMHGECLMQST
Sbjct: 61  SNDGQSVSNNDVNDEEDVSKEVQATGSPHSAGNYRQAAQKMQHVSSTFPVMHGECLMQST 120

Query: 137 QLELVGHSIACASNPYQDPSYGGMMAFYGHQPLGYPMVGMPHARMPLPIEIAQDPVLVNA 196
           QLELVGHSIACASNPYQDPSYGGMMAFYGHQPLGYP VGMPHARMPLPIEIAQDPVLVNA
Sbjct: 121 QLELVGHSIACASNPYQDPSYGGMMAFYGHQPLGYPTVGMPHARMPLPIEIAQDPVLVNA 180

Query: 197 KQYQGILRRRQARAKAEAEKKSIKARKVDFPYLHESRHQHAIRRTRGSGGRFTKKNEADG 256
           KQYQGILRRRQARAKAEAEKKSIKARK   PYLHESRHQHAIRRTRGSGGRFTKKNEADG
Sbjct: 181 KQYQGILRRRQARAKAEAEKKSIKARK---PYLHESRHQHAIRRTRGSGGRFTKKNEADG 240

Query: 257 KEMHSDEVNENGRHLNDGSKQQNGSSLTNMASE 290
           KEMHSDEVNENGRHLNDGSKQQNGSSLTNMASE
Sbjct: 241 KEMHSDEVNENGRHLNDGSKQQNGSSLTNMASE 270

[Close]

BLAST of Carg17969 vs. ExPASy TrEMBL
Match: A0A6J1EMA6 (Nuclear transcription factor Y subunit OS=Cucurbita moschata OX=3662 GN=LOC111433843 PE=3 SV=1)

HSP 1 Score: 521.9 bits (1343), Expect = 1.7e-144
Identity = 269/274 (98.18%), Postives = 270/274 (98.54%), Query Frame = 0


Query: 17  MQSKSETNNQFESDPNGTPSTSIYYEPWWRGIGYNPIPLPMVGGNASSSTSLEFPNGGSE 76
           MQSKSETNNQFESDPNGTPSTSIYYEPWWRGIGYNPIPLPMVGGNASSSTSLEFPNGGSE
Sbjct: 1   MQSKSETNNQFESDPNGTPSTSIYYEPWWRGIGYNPIPLPMVGGNASSSTSLEFPNGGSE 60

Query: 77  SNDGQSVSNNDVNDEEDVSKEVQATGSPHSAGNYRQAAQKMQHVSSTFPVMHGECLMQST 136
           SNDGQSVSNNDVNDEEDVSKEVQATGSPHSAGNYRQAAQKMQHVSSTFPVMHGECLMQST
Sbjct: 61  SNDGQSVSNNDVNDEEDVSKEVQATGSPHSAGNYRQAAQKMQHVSSTFPVMHGECLMQST 120

Query: 137 QLELVGHSIACASNPYQDPSYGGMMAFYGHQPLGYPMVGMPHARMPLPIEIAQDPVLVNA 196
           QLELVGHSIACASNPYQDPSYGGMMAFYGHQPLGYPMVGMPHARMPLPIEIAQDPVLVNA
Sbjct: 121 QLELVGHSIACASNPYQDPSYGGMMAFYGHQPLGYPMVGMPHARMPLPIEIAQDPVLVNA 180

Query: 197 KQYQGILRRRQARAKAEAEKKSIKARKVDFPYLHESRHQHAIRRTRGSGGRFTKKNEA-D 256
           KQYQGILRRRQARAKAEAEKKSIKARK   PYLHESRHQHAIRRTRGSGGRFTKKNEA D
Sbjct: 181 KQYQGILRRRQARAKAEAEKKSIKARK---PYLHESRHQHAIRRTRGSGGRFTKKNEADD 240

Query: 257 GKEMHSDEVNENGRHLNDGSKQQNGSSLTNMASE 290
           GKEMHSDEVNENGRHLNDGSKQQNGSSLTNMAS+
Sbjct: 241 GKEMHSDEVNENGRHLNDGSKQQNGSSLTNMASD 271

[Close]

BLAST of Carg17969 vs. ExPASy TrEMBL
Match: A0A6J1HWY5 (Nuclear transcription factor Y subunit OS=Cucurbita maxima OX=3661 GN=LOC111467408 PE=3 SV=1)

HSP 1 Score: 506.5 bits (1303), Expect = 7.2e-140
Identity = 262/273 (95.97%), Postives = 264/273 (96.70%), Query Frame = 0


Query: 17  MQSKSETNNQFESDPNGTPSTSIYYEPWWRGIGYNPIPLPMVGGNASSSTSLEFPNGGSE 76
           MQSKSETNNQFESDPNGTPSTSIYYEPWWRGIGYNPIPLP+VGGN+SSSTSLEFPNGGSE
Sbjct: 1   MQSKSETNNQFESDPNGTPSTSIYYEPWWRGIGYNPIPLPVVGGNSSSSTSLEFPNGGSE 60

Query: 77  SNDGQSVSNNDVNDEEDVSKEVQATGSPHSAGNYRQAAQKMQHVSSTFPVMHGECLMQST 136
           SNDGQSVSNNDVNDEEDVSKEVQATGSPHSAGNYRQAAQKMQHVSSTFPVMHGECLMQST
Sbjct: 61  SNDGQSVSNNDVNDEEDVSKEVQATGSPHSAGNYRQAAQKMQHVSSTFPVMHGECLMQST 120

Query: 137 QLELVGHSIACASNPYQDPSYGGMMAFYGHQPLGYPMVGMPHARMPLPIEIAQDPVLVNA 196
           QLEL     ACASNPYQDPSYGGMMAFYGHQPLGYP VGMPHARMPLPIEIAQDPVLVNA
Sbjct: 121 QLEL-----ACASNPYQDPSYGGMMAFYGHQPLGYPTVGMPHARMPLPIEIAQDPVLVNA 180

Query: 197 KQYQGILRRRQARAKAEAEKKSIKARKVDFPYLHESRHQHAIRRTRGSGGRFTKKNEADG 256
           KQYQGILRRRQARAKAEAEKKSIKARK   PYLHESRHQHAIRRTRGSGGRFTKKNEADG
Sbjct: 181 KQYQGILRRRQARAKAEAEKKSIKARK---PYLHESRHQHAIRRTRGSGGRFTKKNEADG 240

Query: 257 KEMHSDEVNENGRHLNDGSKQQNGSSLTNMASE 290
           KEMHSDEVNENGRHLNDGSKQQNGSSLTNMASE
Sbjct: 241 KEMHSDEVNENGRHLNDGSKQQNGSSLTNMASE 265

[Close]

BLAST of Carg17969 vs. ExPASy TrEMBL
Match: A0A6J1EFJ6 (Nuclear transcription factor Y subunit OS=Cucurbita moschata OX=3662 GN=LOC111433843 PE=3 SV=1)

HSP 1 Score: 505.8 bits (1301), Expect = 1.2e-139
Identity = 264/274 (96.35%), Postives = 265/274 (96.72%), Query Frame = 0


Query: 17  MQSKSETNNQFESDPNGTPSTSIYYEPWWRGIGYNPIPLPMVGGNASSSTSLEFPNGGSE 76
           MQSKSETNNQFESDPNGTPSTSIYYEPWWRGIGYNPIPLPMVGGNASSSTSLEFPNGGSE
Sbjct: 1   MQSKSETNNQFESDPNGTPSTSIYYEPWWRGIGYNPIPLPMVGGNASSSTSLEFPNGGSE 60

Query: 77  SNDGQSVSNNDVNDEEDVSKEVQATGSPHSAGNYRQAAQKMQHVSSTFPVMHGECLMQST 136
           SNDGQSVSNNDVNDEEDVSKEVQATGSPHSAGNYRQAAQKMQHVSSTFPVMHGECLMQST
Sbjct: 61  SNDGQSVSNNDVNDEEDVSKEVQATGSPHSAGNYRQAAQKMQHVSSTFPVMHGECLMQST 120

Query: 137 QLELVGHSIACASNPYQDPSYGGMMAFYGHQPLGYPMVGMPHARMPLPIEIAQDPVLVNA 196
           QLEL     ACASNPYQDPSYGGMMAFYGHQPLGYPMVGMPHARMPLPIEIAQDPVLVNA
Sbjct: 121 QLEL-----ACASNPYQDPSYGGMMAFYGHQPLGYPMVGMPHARMPLPIEIAQDPVLVNA 180

Query: 197 KQYQGILRRRQARAKAEAEKKSIKARKVDFPYLHESRHQHAIRRTRGSGGRFTKKNEA-D 256
           KQYQGILRRRQARAKAEAEKKSIKARK   PYLHESRHQHAIRRTRGSGGRFTKKNEA D
Sbjct: 181 KQYQGILRRRQARAKAEAEKKSIKARK---PYLHESRHQHAIRRTRGSGGRFTKKNEADD 240

Query: 257 GKEMHSDEVNENGRHLNDGSKQQNGSSLTNMASE 290
           GKEMHSDEVNENGRHLNDGSKQQNGSSLTNMAS+
Sbjct: 241 GKEMHSDEVNENGRHLNDGSKQQNGSSLTNMASD 266

[Close]

BLAST of Carg17969 vs. ExPASy TrEMBL
Match: A0A1S3BP85 (Nuclear transcription factor Y subunit OS=Cucumis melo OX=3656 GN=LOC103492032 PE=3 SV=1)

HSP 1 Score: 458.0 bits (1177), Expect = 2.9e-125
Identity = 244/287 (85.02%), Postives = 254/287 (88.50%), Query Frame = 0


Query: 7   LGMQLSGF---EGMQSKSETNNQFESDPNGTPSTSIYYEPWWRGIGYNPIPLPMVGGNAS 66
           LG    GF   EGMQSKSETNNQ   DPNG PSTSIYYEPWWRG+GYN  PLP+VGGNAS
Sbjct: 9   LGFFQGGFERVEGMQSKSETNNQL--DPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNAS 68

Query: 67  SSTSLEFPNGGSESNDGQSVSNNDVNDEE-DVSKEVQATGSPHSAGNYRQAAQKMQHVSS 126
           SSTSLEFPNGGSESNDGQSVSNNDVNDEE DVSKEVQATGSPHSAG+YRQ  +KMQHVSS
Sbjct: 69  SSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQDTRKMQHVSS 128

Query: 127 TFPVMHGECLMQSTQLELVGHSIACASNPYQDPSYGGMMAFYGHQPLGYPMVGMPHARMP 186
           T P MHGECL QSTQLELVGHSIACASNPYQDP YGGMMAFYGHQPLGYPMVG PHARMP
Sbjct: 129 TLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMP 188

Query: 187 LPIEIAQDPVLVNAKQYQGILRRRQARAKAEAEKKSIKARKVDFPYLHESRHQHAIRRTR 246
           LPIEIAQDPV VNAKQYQGILRRRQARAKAEAEKKSIKARK   PYLHESRHQHAIRR+R
Sbjct: 189 LPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKKSIKARK---PYLHESRHQHAIRRSR 248

Query: 247 GSGGRFTKKNEADGKEMHSDEVNENGRHLNDGSKQQNGSSLTNMASE 290
            SGGRF KK+EADGKE HSD+V+E+G  LNDGS+QQ GSSL N ASE
Sbjct: 249 SSGGRFAKKSEADGKEKHSDKVSESGYRLNDGSEQQKGSSLMNKASE 290

[Close]

BLAST of Carg17969 vs. TAIR 10
Match: AT5G12840.1 (nuclear factor Y, subunit A1 )

HSP 1 Score: 189.1 bits (479), Expect = 4.9e-48
Identity = 124/266 (46.62%), Postives = 161/266 (60.53%), Query Frame = 0


Query: 17  MQSKSETNNQFE-SDPNGTPSTSIYYEPWWRGIGYNPIPLPMVGGNASSSTSLEFPNGGS 76
           MQSK    N+ E ++ +      +Y EPWW+   +  +P     G  S+S+SL+ PN GS
Sbjct: 1   MQSKPGRENEEEVNNHHAVQQPMMYAEPWWKNNSFGVVPQARPSGIPSNSSSLDCPN-GS 60

Query: 77  ESNDGQSVSNND-VNDEEDVS-KEVQATGSPHSAGNYRQAAQKMQHVSSTFPVMHGECLM 136
           ESND  S S +  +N E D + K+ QA  S  S  N+     +    + +   MH + L+
Sbjct: 61  ESNDVHSASEDGALNGENDGTWKDSQAATSSRSVDNH---GMEGNDPALSIRNMHDQPLV 120

Query: 137 QSTQLELVGHSIACASNPYQDPSYGGMMAFYGHQPLGY-PMVGMPHARMPLPIEIAQDPV 196
           Q    ELVGH IAC  NPYQDP YGG+M  YGHQ LG+ P +GMP  R  LP+++AQ+PV
Sbjct: 121 QPP--ELVGHYIACVPNPYQDPYYGGLMGAYGHQQLGFRPYLGMPRERTALPLDMAQEPV 180

Query: 197 LVNAKQYQGILRRRQARAKAEAEKKSIKARKVDFPYLHESRHQHAIRRTRGSGGRFTKKN 256
            VNAKQY+GILRRR+ARAKAE E+K I+ RK   PYLHESRH+HA+RR R SGGRF KK+
Sbjct: 181 YVNAKQYEGILRRRKARAKAELERKVIRDRK---PYLHESRHKHAMRRARASGGRFAKKS 240

Query: 257 EADGKEMHSDEVNENGRHLNDGSKQQ 279
           E +  E       E G   N    +Q
Sbjct: 241 EVEAGEDAGGRDRERGSATNSSGSEQ 257

[Close]

BLAST of Carg17969 vs. TAIR 10
Match: AT5G12840.3 (nuclear factor Y, subunit A1 )

HSP 1 Score: 189.1 bits (479), Expect = 4.9e-48
Identity = 124/266 (46.62%), Postives = 161/266 (60.53%), Query Frame = 0


Query: 17  MQSKSETNNQFE-SDPNGTPSTSIYYEPWWRGIGYNPIPLPMVGGNASSSTSLEFPNGGS 76
           MQSK    N+ E ++ +      +Y EPWW+   +  +P     G  S+S+SL+ PN GS
Sbjct: 1   MQSKPGRENEEEVNNHHAVQQPMMYAEPWWKNNSFGVVPQARPSGIPSNSSSLDCPN-GS 60

Query: 77  ESNDGQSVSNND-VNDEEDVS-KEVQATGSPHSAGNYRQAAQKMQHVSSTFPVMHGECLM 136
           ESND  S S +  +N E D + K+ QA  S  S  N+     +    + +   MH + L+
Sbjct: 61  ESNDVHSASEDGALNGENDGTWKDSQAATSSRSVDNH---GMEGNDPALSIRNMHDQPLV 120

Query: 137 QSTQLELVGHSIACASNPYQDPSYGGMMAFYGHQPLGY-PMVGMPHARMPLPIEIAQDPV 196
           Q    ELVGH IAC  NPYQDP YGG+M  YGHQ LG+ P +GMP  R  LP+++AQ+PV
Sbjct: 121 QPP--ELVGHYIACVPNPYQDPYYGGLMGAYGHQQLGFRPYLGMPRERTALPLDMAQEPV 180

Query: 197 LVNAKQYQGILRRRQARAKAEAEKKSIKARKVDFPYLHESRHQHAIRRTRGSGGRFTKKN 256
            VNAKQY+GILRRR+ARAKAE E+K I+ RK   PYLHESRH+HA+RR R SGGRF KK+
Sbjct: 181 YVNAKQYEGILRRRKARAKAELERKVIRDRK---PYLHESRHKHAMRRARASGGRFAKKS 240

Query: 257 EADGKEMHSDEVNENGRHLNDGSKQQ 279
           E +  E       E G   N    +Q
Sbjct: 241 EVEAGEDAGGRDRERGSATNSSGSEQ 257

[Close]

BLAST of Carg17969 vs. TAIR 10
Match: AT3G20910.1 (nuclear factor Y, subunit A9 )

HSP 1 Score: 188.0 bits (476), Expect = 1.1e-47
Identity = 132/272 (48.53%), Postives = 161/272 (59.19%), Query Frame = 0


Query: 13  GFEGMQSKSET-NNQFESDPNGTPSTSI-YYEPWWR-GIGYNPIPLPMVGGNASSSTSLE 72
           G E M SKS++  N+ +S+ +GT S+SI    PW R     N       G  +S S +L 
Sbjct: 2   GIEDMHSKSDSGGNKVDSEVHGTVSSSINSLNPWHRAAAACNANSSVEAGDKSSKSIALA 61

Query: 73  FPNGGSESNDGQSVSNNDVNDEEDVSKEVQATGSPHSAGNYRQAAQKMQHVSSTFPVMHG 132
                 ESN  +S SN D      V+KE Q T SP SAG+Y    Q+  H   T P  H 
Sbjct: 62  L-----ESNGSKSPSNRD----NTVNKESQVTTSPQSAGDYSDKNQESLHHGITQPPPHP 121

Query: 133 ECLMQSTQLELVGHSIACA-SNPYQDPSYGGMMAFYGHQPLGY-PMVGMPHARMPLPIEI 192
                    +LVGH++  A SNPYQDP Y G+M  YGH PLG+ P  GMPH+RMPLP E+
Sbjct: 122 ---------QLVGHTVGWASSNPYQDPYYAGVMGAYGHHPLGFVPYGGMPHSRMPLPPEM 181

Query: 193 AQDPVLVNAKQYQGILRRRQARAKAEAEKKSIKARKVDFPYLHESRHQHAIRRTRGSGGR 252
           AQ+PV VNAKQYQ ILRRRQARAKAE EKK IK+RK   PYLHESRHQHA+RR RG+GGR
Sbjct: 182 AQEPVFVNAKQYQAILRRRQARAKAELEKKLIKSRK---PYLHESRHQHAMRRPRGTGGR 241

Query: 253 FTKKNEADGKEMHSDEVNENGRHLNDGSKQQN 280
           F KK   +  +  ++E   NG H+       N
Sbjct: 242 FAKKTNTEASKRKAEE-KSNG-HVTQSPSSSN 250

[Close]

BLAST of Carg17969 vs. TAIR 10
Match: AT5G12840.2 (nuclear factor Y, subunit A1 )

HSP 1 Score: 186.4 bits (472), Expect = 3.2e-47
Identity = 123/266 (46.24%), Postives = 160/266 (60.15%), Query Frame = 0


Query: 17  MQSKSETNNQFE-SDPNGTPSTSIYYEPWWRGIGYNPIPLPMVGGNASSSTSLEFPNGGS 76
           MQSK    N+ E ++ +      +Y EPWW+   +  +P     G  S+S+SL+ PN GS
Sbjct: 1   MQSKPGRENEEEVNNHHAVQQPMMYAEPWWKNNSFGVVPQARPSGIPSNSSSLDCPN-GS 60

Query: 77  ESNDGQSVSNND-VNDEEDVS-KEVQATGSPHSAGNYRQAAQKMQHVSSTFPVMHGECLM 136
           ESND  S S +  +N E D + K+ QA  S  S  +  +       + +    MH + L+
Sbjct: 61  ESNDVHSASEDGALNGENDGTWKDSQAATSSRSDNHGMEGNDPALSIRN----MHDQPLV 120

Query: 137 QSTQLELVGHSIACASNPYQDPSYGGMMAFYGHQPLGY-PMVGMPHARMPLPIEIAQDPV 196
           Q    ELVGH IAC  NPYQDP YGG+M  YGHQ LG+ P +GMP  R  LP+++AQ+PV
Sbjct: 121 QPP--ELVGHYIACVPNPYQDPYYGGLMGAYGHQQLGFRPYLGMPRERTALPLDMAQEPV 180

Query: 197 LVNAKQYQGILRRRQARAKAEAEKKSIKARKVDFPYLHESRHQHAIRRTRGSGGRFTKKN 256
            VNAKQY+GILRRR+ARAKAE E+K I+ RK   PYLHESRH+HA+RR R SGGRF KK+
Sbjct: 181 YVNAKQYEGILRRRKARAKAELERKVIRDRK---PYLHESRHKHAMRRARASGGRFAKKS 240

Query: 257 EADGKEMHSDEVNENGRHLNDGSKQQ 279
           E +  E       E G   N    +Q
Sbjct: 241 EVEAGEDAGGRDRERGSATNSSGSEQ 256

[Close]

BLAST of Carg17969 vs. TAIR 10
Match: AT5G12840.4 (nuclear factor Y, subunit A1 )

HSP 1 Score: 186.4 bits (472), Expect = 3.2e-47
Identity = 123/266 (46.24%), Postives = 160/266 (60.15%), Query Frame = 0


Query: 17  MQSKSETNNQFE-SDPNGTPSTSIYYEPWWRGIGYNPIPLPMVGGNASSSTSLEFPNGGS 76
           MQSK    N+ E ++ +      +Y EPWW+   +  +P     G  S+S+SL+ PN GS
Sbjct: 1   MQSKPGRENEEEVNNHHAVQQPMMYAEPWWKNNSFGVVPQARPSGIPSNSSSLDCPN-GS 60

Query: 77  ESNDGQSVSNND-VNDEEDVS-KEVQATGSPHSAGNYRQAAQKMQHVSSTFPVMHGECLM 136
           ESND  S S +  +N E D + K+ QA  S  S  +  +       + +    MH + L+
Sbjct: 61  ESNDVHSASEDGALNGENDGTWKDSQAATSSRSDNHGMEGNDPALSIRN----MHDQPLV 120

Query: 137 QSTQLELVGHSIACASNPYQDPSYGGMMAFYGHQPLGY-PMVGMPHARMPLPIEIAQDPV 196
           Q    ELVGH IAC  NPYQDP YGG+M  YGHQ LG+ P +GMP  R  LP+++AQ+PV
Sbjct: 121 QPP--ELVGHYIACVPNPYQDPYYGGLMGAYGHQQLGFRPYLGMPRERTALPLDMAQEPV 180

Query: 197 LVNAKQYQGILRRRQARAKAEAEKKSIKARKVDFPYLHESRHQHAIRRTRGSGGRFTKKN 256
            VNAKQY+GILRRR+ARAKAE E+K I+ RK   PYLHESRH+HA+RR R SGGRF KK+
Sbjct: 181 YVNAKQYEGILRRRKARAKAELERKVIRDRK---PYLHESRHKHAMRRARASGGRFAKKS 240

Query: 257 EADGKEMHSDEVNENGRHLNDGSKQQ 279
           E +  E       E G   N    +Q
Sbjct: 241 EVEAGEDAGGRDRERGSATNSSGSEQ 256

The following BLAST results are available for this feature:

BLAST of Carg17969 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022088.1	2.9e-159	100.00	Nuclear transcription factor Y subunit A-9 [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022968054.1	2.0e-144	97.80	nuclear transcription factor Y subunit A-1 isoform X1 [Cucurbita maxima]	[more]
XP_022926860.1	3.4e-144	98.18	nuclear transcription factor Y subunit A-1-like isoform X1 [Cucurbita moschata]	[more]
XP_023530428.1	1.0e-143	97.80	nuclear transcription factor Y subunit A-1-like isoform X1 [Cucurbita pepo subsp...	[more]
KAG6588190.1	2.5e-142	97.07	Nuclear transcription factor Y subunit A-1, partial [Cucurbita argyrosperma subs...	[more]

BLAST of Carg17969 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LXV5	6.9e-47	46.62	Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q945M9	1.5e-46	48.53	Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q8VY64	1.1e-20	42.05	Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q84JP1	1.2e-19	39.34	Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q93ZH2	5.2e-18	37.33	Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]

BLAST of Carg17969 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HYH4	9.7e-145	97.80	Nuclear transcription factor Y subunit OS=Cucurbita maxima OX=3661 GN=LOC1114674...	[more]
A0A6J1EMA6	1.7e-144	98.18	Nuclear transcription factor Y subunit OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
A0A6J1HWY5	7.2e-140	95.97	Nuclear transcription factor Y subunit OS=Cucurbita maxima OX=3661 GN=LOC1114674...	[more]
A0A6J1EFJ6	1.2e-139	96.35	Nuclear transcription factor Y subunit OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
A0A1S3BP85	2.9e-125	85.02	Nuclear transcription factor Y subunit OS=Cucumis melo OX=3656 GN=LOC103492032 P...	[more]

BLAST of Carg17969 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G12840.1	4.9e-48	46.62	nuclear factor Y, subunit A1	[more]
AT5G12840.3	4.9e-48	46.62	nuclear factor Y, subunit A1	[more]
AT3G20910.1	1.1e-47	48.53	nuclear factor Y, subunit A9	[more]
AT5G12840.2	3.2e-47	46.24	nuclear factor Y, subunit A1	[more]
AT5G12840.4	3.2e-47	46.24	nuclear factor Y, subunit A1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001289	Nuclear transcription factor Y subunit A	PRINTS	PR00616	CCAATSUBUNTB	coord: 191..213 score: 73.67 coord: 225..248 score: 71.99
IPR001289	Nuclear transcription factor Y subunit A	SMART	SM00521	cbf3	coord: 187..251 e-value: 1.5E-30 score: 117.5
IPR001289	Nuclear transcription factor Y subunit A	PFAM	PF02045	CBFB_NFYA	coord: 191..248 e-value: 1.6E-23 score: 83.0
IPR001289	Nuclear transcription factor Y subunit A	PANTHER	PTHR12632	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	coord: 49..277
IPR001289	Nuclear transcription factor Y subunit A	PROSITE	PS51152	NFYA_HAP2_2	coord: 188..251 score: 31.507013
None	No IPR available	GENE3D	6.10.250.2430		coord: 188..253 e-value: 2.6E-27 score: 97.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 271..289
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 226..289
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 246..270
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..114
None	No IPR available	PANTHER	PTHR12632:SF59	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9	coord: 49..277

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17969-RA	Carg17969-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity