Carg17888 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg17888
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	suppressor of phytochrome b 5
Location	Carg_Chr10: 1219305 .. 1220401 (+)
RNA-Seq Expression	Carg17888
Synteny	Carg17888

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAGAATACAAATGGAAGAACCAAAAGACAGAAAGGAATAAGAATTCTGAAGGTGAGATAGGTAATGTAAGGGTTATGAAGATGTCCATTTCCATGCTATTTAAGAACATGAGTCTTATATTCTCTCTAGTGTTGTAGGGCTGAGCTAACCCATCTCTCTGCATTTAAAGCTACCTCTTCTAATAATGATAGAATGCAGAGAAGAGTTAAGATGATTGCCATCTTCTGTGATGAACCAACCCCCCCATGTCCTTTCAAATTCAAGAAACTTTAGCATGTTTGTATATCTTTTGCAATAGGAAGGATTTCTCTTTCATGGACTCCTTCTAGCTGTCTTCTGCTCAGTGAAAAAGTCAGAGAATTTATTTGCCTTTGGATTTCCAGGTGGTGCAGTGAGGGTTTTTATCTCTACCCATTAAGAACTTGTGTGTTTCTTTTCATGTTTTTTTTAAAAAATTGGGTTTTGTAGCTTTCATATAATTAGAGAAGCCTGTTTGGGTCAGAGAGGTAGCAAAAGGGTATGAATGGTTTCCTCAGGTGTCTAAATTCAGCCTTCCCCCAATTCTGTTCTTGTTCTTGTTCTTGTTCTTGTTCTGTGTTCTGTGTTCCTTAAACTCCTCGAATTGCTTGTGTCCAGTTATGGAGCCATCCCAAATGTTTGGAGTTTCAGAAGAATGTCACAGCAGTGAATCTGGTTGGACTATGTATATTGGATCCCCTGCAGCTGCTGATGGTTCCAGTGATGTTGATACTGGTGCAGCTTCTGATGAAGAAGAAGATGAAGAACACAAAGGCTATTATGATATTAACCAAGATGACAGCGATGACTCCATGGCTTCTGATGCTTCTTCAGGCCCAAGTCATCAACAAAGACGCCACCCATTTGGTGGGATGAAGAATCCCCCCCATGCTTTGCTGCCTCTCTTCACCCACCAGAACAAGCCAAACTCTTGCTTCCAAACCAAACCCAAACCCAAACCCAAGAAGCCATTAAAGAAGAAGCAAAGAGCTGAAAGAAAAGAAGTGAAAGAGCCAAAGAGCTCAGTTCAGAGCAGCTCCAAGGCAAGAAAGAGCATCTGGATGGGTAAAAGAAAC

mRNA sequence

GAAAAGAATACAAATGGAAGAACCAAAAGACAGAAAGGAATAAGAATTCTGAAGTTATGGAGCCATCCCAAATGTTTGGAGTTTCAGAAGAATGTCACAGCAGTGAATCTGGTTGGACTATGTATATTGGATCCCCTGCAGCTGCTGATGGTTCCAGTGATGTTGATACTGGTGCAGCTTCTGATGAAGAAGAAGATGAAGAACACAAAGGCTATTATGATATTAACCAAGATGACAGCGATGACTCCATGGCTTCTGATGCTTCTTCAGGCCCAAGTCATCAACAAAGACGCCACCCATTTGGTGGGATGAAGAATCCCCCCCATGCTTTGCTGCCTCTCTTCACCCACCAGAACAAGCCAAACTCTTGCTTCCAAACCAAACCCAAACCCAAACCCAAGAAGCCATTAAAGAAGAAGCAAAGAGCTGAAAGAAAAGAAGTGAAAGAGCCAAAGAGCTCAGTTCAGAGCAGCTCCAAGGCAAGAAAGAGCATCTGGATGGGTAAAAGAAAC

Coding sequence (CDS)

ATGGAGCCATCCCAAATGTTTGGAGTTTCAGAAGAATGTCACAGCAGTGAATCTGGTTGGACTATGTATATTGGATCCCCTGCAGCTGCTGATGGTTCCAGTGATGTTGATACTGGTGCAGCTTCTGATGAAGAAGAAGATGAAGAACACAAAGGCTATTATGATATTAACCAAGATGACAGCGATGACTCCATGGCTTCTGATGCTTCTTCAGGCCCAAGTCATCAACAAAGACGCCACCCATTTGGTGGGATGAAGAATCCCCCCCATGCTTTGCTGCCTCTCTTCACCCACCAGAACAAGCCAAACTCTTGCTTCCAAACCAAACCCAAACCCAAACCCAAGAAGCCATTAAAGAAGAAGCAAAGAGCTGAAAGAAAAGAAGTGAAAGAGCCAAAGAGCTCAGTTCAGAGCAGCTCCAAGGCAAGAAAGAGCATCTGGATGGGTAAAAGAAAC

Protein sequence

MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSCFQTKPKPKPKKPLKKKQRAERKEVKEPKSSVQSSSKARKSIWMGKRN

Homology

[Close]

BLAST of Carg17888 vs. NCBI nr
Match: KAG6589579.1 (hypothetical protein SDJN03_15002, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023268.1 hypothetical protein SDJN02_14293, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 293.5 bits (750), Expect = 1.0e-75
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDD 60
           MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDD
Sbjct: 1   MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDD 60

Query: 61  SDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSCFQTKPKPKPKKPLKK 120
           SDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSCFQTKPKPKPKKPLKK
Sbjct: 61  SDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSCFQTKPKPKPKKPLKK 120

Query: 121 KQRAERKEVKEPKSSVQSSSKARKSIWMGKRN 153
           KQRAERKEVKEPKSSVQSSSKARKSIWMGKRN
Sbjct: 121 KQRAERKEVKEPKSSVQSSSKARKSIWMGKRN 152

[Close]

BLAST of Carg17888 vs. NCBI nr
Match: XP_022921475.1 (uncharacterized protein LOC111429737 isoform X3 [Cucurbita moschata] >XP_022921476.1 uncharacterized protein LOC111429737 isoform X3 [Cucurbita moschata] >XP_022921477.1 uncharacterized protein LOC111429737 isoform X3 [Cucurbita moschata])

HSP 1 Score: 285.4 bits (729), Expect = 2.8e-73
Identity = 150/154 (97.40%), Postives = 151/154 (98.05%), Query Frame = 0


Query: 1   MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDD 60
           MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDD
Sbjct: 1   MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDD 60

Query: 61  SDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSCFQT--KPKPKPKKPL 120
           SDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSCF+T  KPKPKPKKPL
Sbjct: 61  SDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSCFETKPKPKPKPKKPL 120

Query: 121 KKKQRAERKEVKEPKSSVQSSSKARKSIWMGKRN 153
           KKKQRAERKEVKEPKSSVQSSSKARK IWMGKRN
Sbjct: 121 KKKQRAERKEVKEPKSSVQSSSKARKCIWMGKRN 154

[Close]

BLAST of Carg17888 vs. NCBI nr
Match: XP_022921472.1 (uncharacterized protein LOC111429737 isoform X1 [Cucurbita moschata] >XP_022921473.1 uncharacterized protein LOC111429737 isoform X1 [Cucurbita moschata])

HSP 1 Score: 285.4 bits (729), Expect = 2.8e-73
Identity = 150/154 (97.40%), Postives = 151/154 (98.05%), Query Frame = 0


Query: 1   MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDD 60
           MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDD
Sbjct: 24  MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDD 83

Query: 61  SDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSCFQT--KPKPKPKKPL 120
           SDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSCF+T  KPKPKPKKPL
Sbjct: 84  SDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSCFETKPKPKPKPKKPL 143

Query: 121 KKKQRAERKEVKEPKSSVQSSSKARKSIWMGKRN 153
           KKKQRAERKEVKEPKSSVQSSSKARK IWMGKRN
Sbjct: 144 KKKQRAERKEVKEPKSSVQSSSKARKCIWMGKRN 177

[Close]

BLAST of Carg17888 vs. NCBI nr
Match: XP_022921474.1 (uncharacterized protein LOC111429737 isoform X2 [Cucurbita moschata])

HSP 1 Score: 285.4 bits (729), Expect = 2.8e-73
Identity = 150/154 (97.40%), Postives = 151/154 (98.05%), Query Frame = 0


Query: 1   MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDD 60
           MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDD
Sbjct: 6   MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDD 65

Query: 61  SDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSCFQT--KPKPKPKKPL 120
           SDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSCF+T  KPKPKPKKPL
Sbjct: 66  SDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSCFETKPKPKPKPKKPL 125

Query: 121 KKKQRAERKEVKEPKSSVQSSSKARKSIWMGKRN 153
           KKKQRAERKEVKEPKSSVQSSSKARK IWMGKRN
Sbjct: 126 KKKQRAERKEVKEPKSSVQSSSKARKCIWMGKRN 159

[Close]

BLAST of Carg17888 vs. NCBI nr
Match: XP_023516938.1 (uncharacterized protein LOC111780698 [Cucurbita pepo subsp. pepo] >XP_023516939.1 uncharacterized protein LOC111780698 [Cucurbita pepo subsp. pepo] >XP_023516941.1 uncharacterized protein LOC111780698 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 285.0 bits (728), Expect = 3.7e-73
Identity = 150/154 (97.40%), Postives = 151/154 (98.05%), Query Frame = 0


Query: 1   MEPSQMFGVSEECHSSESGWTMYIGSP--AAADGSSDVDTGAASDEEEDEEHKGYYDINQ 60
           MEPSQMFGVSEECHSSESGWTMYIGSP  AAADGSSDVDTGAASDEEEDEEHKGYYDINQ
Sbjct: 1   MEPSQMFGVSEECHSSESGWTMYIGSPAAAAADGSSDVDTGAASDEEEDEEHKGYYDINQ 60

Query: 61  DDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSCFQTKPKPKPKKPL 120
           DDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSC +TKPKPKPKKPL
Sbjct: 61  DDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSCLETKPKPKPKKPL 120

Query: 121 KKKQRAERKEVKEPKSSVQSSSKARKSIWMGKRN 153
           KKKQRAERKEVKEPKSSVQSSSKARKSIWMGKRN
Sbjct: 121 KKKQRAERKEVKEPKSSVQSSSKARKSIWMGKRN 154

[Close]

BLAST of Carg17888 vs. ExPASy Swiss-Prot
Match: Q9FKQ9 (Protein SOB FIVE-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=SOFL4 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.0e-05
Identity = 36/78 (46.15%), Postives = 42/78 (53.85%), Query Frame = 0


Query: 11 EECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDIN-----------QD 70
          EEC SSESGWT Y+ SP   D    VD        ED  ++GY   N             
Sbjct: 4  EECSSSESGWTTYLSSPIKVDEDEVVD--------EDYYYEGYNIYNYSSKVEHEEERNK 63

Query: 71 DSDDSMASDASSGPSHQQ 78
          DSDDSMASDASSGP++Q+
Sbjct: 64 DSDDSMASDASSGPNYQR 73

[Close]

BLAST of Carg17888 vs. ExPASy Swiss-Prot
Match: Q9LEZ1 (Protein SUPPRESSOR OF PHYTOCHROME B 5 OS=Arabidopsis thaliana OX=3702 GN=SOB5 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.9e-04
Identity = 32/73 (43.84%), Postives = 40/73 (54.79%), Query Frame = 0


Query: 1  MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDD 60
          ME + +FG  E+C S ESGWTMY+   A+     D D     D+EE+E+          D
Sbjct: 1  MESANIFGSDEDCRSCESGWTMYL---ASQSHDRDDDCYYGDDDEEEED---------SD 60

Query: 61 SDDSMASDASSGP 74
            DSM SDASSGP
Sbjct: 61 GGDSMDSDASSGP 61

[Close]

BLAST of Carg17888 vs. ExPASy Swiss-Prot
Match: Q67YG7 (Protein SOB FIVE-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=SOFL1 PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 8.5e-04
Identity = 34/79 (43.04%), Postives = 41/79 (51.90%), Query Frame = 0


Query: 11 EECHSSESGWTMYI---------GSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDDS 70
          EE  S ESGWTMYI          S    D   D     A D  E+++     D   ++S
Sbjct: 13 EEYSSCESGWTMYIEDAFHGNDQSSVVVDDDDDDTQVKEADDGYENDDGDTSDDGGDEES 72

Query: 71 DDSMASDASSGPSHQQRRH 81
          DDSMASDASSGPS+Q  +H
Sbjct: 73 DDSMASDASSGPSNQLPKH 91

[Close]

BLAST of Carg17888 vs. ExPASy TrEMBL
Match: A0A6J1E0K4 (uncharacterized protein LOC111429737 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111429737 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.4e-73
Identity = 150/154 (97.40%), Postives = 151/154 (98.05%), Query Frame = 0


Query: 1   MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDD 60
           MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDD
Sbjct: 1   MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDD 60

Query: 61  SDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSCFQT--KPKPKPKKPL 120
           SDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSCF+T  KPKPKPKKPL
Sbjct: 61  SDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSCFETKPKPKPKPKKPL 120

Query: 121 KKKQRAERKEVKEPKSSVQSSSKARKSIWMGKRN 153
           KKKQRAERKEVKEPKSSVQSSSKARK IWMGKRN
Sbjct: 121 KKKQRAERKEVKEPKSSVQSSSKARKCIWMGKRN 154

[Close]

BLAST of Carg17888 vs. ExPASy TrEMBL
Match: A0A6J1E405 (uncharacterized protein LOC111429737 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111429737 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.4e-73
Identity = 150/154 (97.40%), Postives = 151/154 (98.05%), Query Frame = 0


Query: 1   MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDD 60
           MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDD
Sbjct: 24  MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDD 83

Query: 61  SDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSCFQT--KPKPKPKKPL 120
           SDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSCF+T  KPKPKPKKPL
Sbjct: 84  SDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSCFETKPKPKPKPKKPL 143

Query: 121 KKKQRAERKEVKEPKSSVQSSSKARKSIWMGKRN 153
           KKKQRAERKEVKEPKSSVQSSSKARK IWMGKRN
Sbjct: 144 KKKQRAERKEVKEPKSSVQSSSKARKCIWMGKRN 177

[Close]

BLAST of Carg17888 vs. ExPASy TrEMBL
Match: A0A6J1E0K6 (uncharacterized protein LOC111429737 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111429737 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.4e-73
Identity = 150/154 (97.40%), Postives = 151/154 (98.05%), Query Frame = 0


Query: 1   MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDD 60
           MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDD
Sbjct: 6   MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDD 65

Query: 61  SDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSCFQT--KPKPKPKKPL 120
           SDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSCF+T  KPKPKPKKPL
Sbjct: 66  SDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSCFETKPKPKPKPKKPL 125

Query: 121 KKKQRAERKEVKEPKSSVQSSSKARKSIWMGKRN 153
           KKKQRAERKEVKEPKSSVQSSSKARK IWMGKRN
Sbjct: 126 KKKQRAERKEVKEPKSSVQSSSKARKCIWMGKRN 159

[Close]

BLAST of Carg17888 vs. ExPASy TrEMBL
Match: A0A6J1JBQ3 (uncharacterized protein LOC111485335 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111485335 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.5e-72
Identity = 148/152 (97.37%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDD 60
           MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASD EEDEEHKGYYDINQDD
Sbjct: 1   MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASD-EEDEEHKGYYDINQDD 60

Query: 61  SDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSCFQTKPKPKPKKPLKK 120
           SDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSC +TKPKPKPKKPLKK
Sbjct: 61  SDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSCLETKPKPKPKKPLKK 120

Query: 121 KQRAERKEVKEPKSSVQSSSKARKSIWMGKRN 153
           KQRAERKEVKEPKSSVQSSSKARKSIWMGKR+
Sbjct: 121 KQRAERKEVKEPKSSVQSSSKARKSIWMGKRS 151

[Close]

BLAST of Carg17888 vs. ExPASy TrEMBL
Match: A0A6J1JKS2 (uncharacterized protein LOC111485335 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485335 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.5e-72
Identity = 148/152 (97.37%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDD 60
           MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASD EEDEEHKGYYDINQDD
Sbjct: 24  MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASD-EEDEEHKGYYDINQDD 83

Query: 61  SDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSCFQTKPKPKPKKPLKK 120
           SDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSC +TKPKPKPKKPLKK
Sbjct: 84  SDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSCLETKPKPKPKKPLKK 143

Query: 121 KQRAERKEVKEPKSSVQSSSKARKSIWMGKRN 153
           KQRAERKEVKEPKSSVQSSSKARKSIWMGKR+
Sbjct: 144 KQRAERKEVKEPKSSVQSSSKARKSIWMGKRS 174

[Close]

BLAST of Carg17888 vs. TAIR 10
Match: AT5G38790.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G30580.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 50.4 bits (119), Expect = 1.4e-06
Identity = 36/78 (46.15%), Postives = 42/78 (53.85%), Query Frame = 0


Query: 11 EECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDIN-----------QD 70
          EEC SSESGWT Y+ SP   D    VD        ED  ++GY   N             
Sbjct: 4  EECSSSESGWTTYLSSPIKVDEDEVVD--------EDYYYEGYNIYNYSSKVEHEEERNK 63

Query: 71 DSDDSMASDASSGPSHQQ 78
          DSDDSMASDASSGP++Q+
Sbjct: 64 DSDDSMASDASSGPNYQR 73

[Close]

BLAST of Carg17888 vs. TAIR 10
Match: AT5G08150.1 (suppressor of phytochrome b 5 )

HSP 1 Score: 46.6 bits (109), Expect = 2.1e-05
Identity = 32/73 (43.84%), Postives = 40/73 (54.79%), Query Frame = 0


Query: 1  MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDD 60
          ME + +FG  E+C S ESGWTMY+   A+     D D     D+EE+E+          D
Sbjct: 1  MESANIFGSDEDCRSCESGWTMYL---ASQSHDRDDDCYYGDDDEEEED---------SD 60

Query: 61 SDDSMASDASSGP 74
            DSM SDASSGP
Sbjct: 61 GGDSMDSDASSGP 61

[Close]

BLAST of Carg17888 vs. TAIR 10
Match: AT1G26210.1 (SOB five-like 1 )

HSP 1 Score: 45.1 bits (105), Expect = 6.0e-05
Identity = 34/79 (43.04%), Postives = 41/79 (51.90%), Query Frame = 0


Query: 11 EECHSSESGWTMYI---------GSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDDS 70
          EE  S ESGWTMYI          S    D   D     A D  E+++     D   ++S
Sbjct: 13 EEYSSCESGWTMYIEDAFHGNDQSSVVVDDDDDDTQVKEADDGYENDDGDTSDDGGDEES 72

Query: 71 DDSMASDASSGPSHQQRRH 81
          DDSMASDASSGPS+Q  +H
Sbjct: 73 DDSMASDASSGPSNQLPKH 91

[Close]

BLAST of Carg17888 vs. TAIR 10
Match: AT3G30580.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38790.1); Has 75 Blast hits to 75 proteins in 16 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 63; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 7.9e-05
Identity = 43/126 (34.13%), Postives = 65/126 (51.59%), Query Frame = 0


Query: 11  EECHSSESGWTMYIGSPAAADGSSDVDTGAASD---EEEDEEHKGYYDINQDDSDDSMAS 70
           EEC SSESGWT YI S    +    +D         E++  ++   Y+IN+ DSDDSMAS
Sbjct: 4   EECSSSESGWTTYISSRMEEEEEEVIDEVYYEGHIIEKDRRKYANEYEINK-DSDDSMAS 63

Query: 71  DASSGPSHQQ-----RRHPFGGMKNPPHALLPLFTHQNKPNSCFQTKPKPKPKKPLKKKQ 129
           DASSGPS+ Q     +R     ++N       +++H+    +      + K KK  + K 
Sbjct: 64  DASSGPSYHQTSNRGKRREGLALRNGKGESNDVYSHRIDDKNIGNLISRKKEKKKSENKS 123

The following BLAST results are available for this feature:

BLAST of Carg17888 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589579.1	1.0e-75	100.00	hypothetical protein SDJN03_15002, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022921475.1	2.8e-73	97.40	uncharacterized protein LOC111429737 isoform X3 [Cucurbita moschata] >XP_0229214...	[more]
XP_022921472.1	2.8e-73	97.40	uncharacterized protein LOC111429737 isoform X1 [Cucurbita moschata] >XP_0229214...	[more]
XP_022921474.1	2.8e-73	97.40	uncharacterized protein LOC111429737 isoform X2 [Cucurbita moschata]	[more]
XP_023516938.1	3.7e-73	97.40	uncharacterized protein LOC111780698 [Cucurbita pepo subsp. pepo] >XP_023516939....	[more]

BLAST of Carg17888 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FKQ9	2.0e-05	46.15	Protein SOB FIVE-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=SOFL4 PE=2 SV=1	[more]
Q9LEZ1	2.9e-04	43.84	Protein SUPPRESSOR OF PHYTOCHROME B 5 OS=Arabidopsis thaliana OX=3702 GN=SOB5 PE...	[more]
Q67YG7	8.5e-04	43.04	Protein SOB FIVE-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=SOFL1 PE=1 SV=1	[more]

BLAST of Carg17888 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E0K4	1.4e-73	97.40	uncharacterized protein LOC111429737 isoform X3 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1E405	1.4e-73	97.40	uncharacterized protein LOC111429737 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1E0K6	1.4e-73	97.40	uncharacterized protein LOC111429737 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1JBQ3	1.5e-72	97.37	uncharacterized protein LOC111485335 isoform X3 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1JKS2	1.5e-72	97.37	uncharacterized protein LOC111485335 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Carg17888 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G38790.1	1.4e-06	46.15	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G08150.1	2.1e-05	43.84	suppressor of phytochrome b 5	[more]
AT1G26210.1	6.0e-05	43.04	SOB five-like 1	[more]
AT3G30580.1	7.9e-05	34.13	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..77
None	No IPR available	PANTHER	PTHR33347:SF31	OS08G0486700 PROTEIN	coord: 1..138
IPR044670	SOB-five-Like (SOFL) family	PANTHER	PTHR33347	OSJNBA0091C07.3 PROTEIN	coord: 1..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17888-RA	Carg17888-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009736	cytokinin-activated signaling pathway
biological_process	GO:0009691	cytokinin biosynthetic process
biological_process	GO:0009690	cytokinin metabolic process