Carg17836 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg17836
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	Carg_Chr10: 4359492 .. 4360622 (+)
RNA-Seq Expression	Carg17836
Synteny	Carg17836

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACTCAGGCACTTGTTTCATCTTCCTTAACCTCCACGGTGGGCGCCGCCAGACAAAGATTTGGTCCCAAACCCTGTCTTGGATCCTCCACAAAACAAGCTTCTTTTGTTGTTAGAGCTGAAGCCACTCCTCCCGTTAAGGTTATTCTCGCCCCTTTTAATCGATGTTCGTAATCGTTTGTTGAGCATTGTGCTAGTTTTTGAGCTCCGAGAGTGTTCGATTATGTGTAAAACTCTAAATTTACCGTAACGGCTTAACCTATTGACTTTCCCTCTAGAGTTTAAATGTAGCTCAATTGAGTAAGACATCTGTTACCTTTTCTAAATAGTATTGATTGTGAGATTTAATATTGTGTTCTAATGCAGCAAACCGAGCATTATGGTTTGCTTCAAAACAAAGCCTTTCTTACTTGGATGGAAGGTATATATATATATTTTCAATCAAAAAGTTGACGTAAGAAACGAGAATGTTATCAAACAGATCTAAAATAAACTTTTGGTTTGAATGACAATCTCCCGGGCGATTACGGGTTCGACCCACTAGGGCTATCGGACCCTGAAGGCACGGGAGGGTTCATCGAGCCGAGATGGTTGGCATACGGGGAGGTAATCAACGGGCGGTTCGCAATGTTGGGAGTAATAGGAGCCATAGCCCCAGAGATATTAGGGTCACTAGGGCTAATCCCACCAGAAACAGCCCTCCCATGGTTCAAAACTGGGGTGATCCCACCAGCAGGGACCTACAACTATTGGGCAGACCCCTACACACTATTTGTACTTGAAATGGCTCTAATGGGGTTCGCTGAACATAGAAGATTTCAAGATTGGGCTAAGCCAGGGTCCATGGGGAAGCAGTACTTCTTGGGTCTAGAGAGGTTCTTGGGTGGGTCAGGGGACCCAGCTTACCCAGGTGGGCCCTTGTTCAACCCTCTAGGGTTTGGTAAAGATGAGAAGTCAATGAAGGATTTGAAGCTAAAAGAAGTGAAGAATGGAAGGCTTGCAATGTTGGCCATATTGGGTTTGTTTATACAAGGACTTGTCACTGGCGTTGGCCCTTACCAAAACCTTTTGAACCATTTGTCTGACCCTATTAACAATAACCTCTTGACAAGCCTTAAATTTCACTAG

mRNA sequence

ATGGCCACTCAGGCACTTGTTTCATCTTCCTTAACCTCCACGGTGGGCGCCGCCAGACAAAGATTTGGTCCCAAACCCTGTCTTGGATCCTCCACAAAACAAGCTTCTTTTGTTGTTAGAGCTGAAGCCACTCCTCCCGTTAAGCAAACCGAGCATTATGGTTTGCTTCAAAACAAAGCCTTTCTTACTTGGATGGAAGGGCTATCGGACCCTGAAGGCACGGGAGGGTTCATCGAGCCGAGATGGTTGGCATACGGGGAGGTAATCAACGGGCGGTTCGCAATGTTGGGAGTAATAGGAGCCATAGCCCCAGAGATATTAGGGTCACTAGGGCTAATCCCACCAGAAACAGCCCTCCCATGGTTCAAAACTGGGGTGATCCCACCAGCAGGGACCTACAACTATTGGGCAGACCCCTACACACTATTTGTACTTGAAATGGCTCTAATGGGGTTCGCTGAACATAGAAGATTTCAAGATTGGGCTAAGCCAGGGTCCATGGGGAAGCAGTACTTCTTGGGTCTAGAGAGGTTCTTGGGTGGGTCAGGGGACCCAGCTTACCCAGGTGGGCCCTTGTTCAACCCTCTAGGGTTTGGTAAAGATGAGAAGTCAATGAAGGATTTGAAGCTAAAAGAAGTGAAGAATGGAAGGCTTGCAATGTTGGCCATATTGGGTTTGTTTATACAAGGACTTGTCACTGGCGTTGGCCCTTACCAAAACCTTTTGAACCATTTGTCTGACCCTATTAACAATAACCTCTTGACAAGCCTTAAATTTCACTAG

Coding sequence (CDS)

ATGGCCACTCAGGCACTTGTTTCATCTTCCTTAACCTCCACGGTGGGCGCCGCCAGACAAAGATTTGGTCCCAAACCCTGTCTTGGATCCTCCACAAAACAAGCTTCTTTTGTTGTTAGAGCTGAAGCCACTCCTCCCGTTAAGCAAACCGAGCATTATGGTTTGCTTCAAAACAAAGCCTTTCTTACTTGGATGGAAGGGCTATCGGACCCTGAAGGCACGGGAGGGTTCATCGAGCCGAGATGGTTGGCATACGGGGAGGTAATCAACGGGCGGTTCGCAATGTTGGGAGTAATAGGAGCCATAGCCCCAGAGATATTAGGGTCACTAGGGCTAATCCCACCAGAAACAGCCCTCCCATGGTTCAAAACTGGGGTGATCCCACCAGCAGGGACCTACAACTATTGGGCAGACCCCTACACACTATTTGTACTTGAAATGGCTCTAATGGGGTTCGCTGAACATAGAAGATTTCAAGATTGGGCTAAGCCAGGGTCCATGGGGAAGCAGTACTTCTTGGGTCTAGAGAGGTTCTTGGGTGGGTCAGGGGACCCAGCTTACCCAGGTGGGCCCTTGTTCAACCCTCTAGGGTTTGGTAAAGATGAGAAGTCAATGAAGGATTTGAAGCTAAAAGAAGTGAAGAATGGAAGGCTTGCAATGTTGGCCATATTGGGTTTGTTTATACAAGGACTTGTCACTGGCGTTGGCCCTTACCAAAACCTTTTGAACCATTTGTCTGACCCTATTAACAATAACCTCTTGACAAGCCTTAAATTTCACTAG

Protein sequence

MATQALVSSSLTSTVGAARQRFGPKPCLGSSTKQASFVVRAEATPPVKQTEHYGLLQNKAFLTWMEGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGVIGAIAPEILGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLERFLGGSGDPAYPGGPLFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAILGLFIQGLVTGVGPYQNLLNHLSDPINNNLLTSLKFH

Homology

[Close]

BLAST of Carg17836 vs. NCBI nr
Match: KAG6590140.1 (Chlorophyll a-b binding protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023805.1 Chlorophyll a-b binding protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 534.3 bits (1375), Expect = 6.0e-148
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0


Query: 1   MATQALVSSSLTSTVGAARQRFGPKPCLGSSTKQASFVVRAEATPPVKQTEHYGLLQNKA 60
           MATQALVSSSLTSTVGAARQRFGPKPCLGSSTKQASFVVRAEATPPVKQTEHYGLLQNKA
Sbjct: 1   MATQALVSSSLTSTVGAARQRFGPKPCLGSSTKQASFVVRAEATPPVKQTEHYGLLQNKA 60

Query: 61  FLTWMEGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGVIGAIAPEILGSLGLIPPETALP 120
           FLTWMEGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGVIGAIAPEILGSLGLIPPETALP
Sbjct: 61  FLTWMEGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGVIGAIAPEILGSLGLIPPETALP 120

Query: 121 WFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLERFLG 180
           WFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLERFLG
Sbjct: 121 WFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLERFLG 180

Query: 181 GSGDPAYPGGPLFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAILGLFIQGLVTGVGPYQN 240
           GSGDPAYPGGPLFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAILGLFIQGLVTGVGPYQN
Sbjct: 181 GSGDPAYPGGPLFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAILGLFIQGLVTGVGPYQN 240

Query: 241 LLNHLSDPINNNLLTSLKFH 261
           LLNHLSDPINNNLLTSLKFH
Sbjct: 241 LLNHLSDPINNNLLTSLKFH 260

[Close]

BLAST of Carg17836 vs. NCBI nr
Match: XP_022960627.1 (photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 485.3 bits (1248), Expect = 3.2e-133
Identity = 243/273 (89.01%), Postives = 252/273 (92.31%), Query Frame = 0


Query: 1   MATQALVSSSLTSTVGAARQRFGPKPCLGSSTKQASFVVRAEATPPVKQTEHYGL-LQNK 60
           MATQALVSSSLTS+VGAARQRFGPKPCLGSSTKQASFVVRAEATPPVKQ  +  L   +K
Sbjct: 1   MATQALVSSSLTSSVGAARQRFGPKPCLGSSTKQASFVVRAEATPPVKQGANRALWFASK 60

Query: 61  AFLTWME------------GLSDPEGTGGFIEPRWLAYGEVINGRFAMLGVIGAIAPEIL 120
             L++++            GLSDPEGTGGFIEPRWLAYGEVINGRFAMLGV+GAIAPEIL
Sbjct: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGVVGAIAPEIL 120

Query: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSM 180
           GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSM
Sbjct: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSM 180

Query: 181 GKQYFLGLERFLGGSGDPAYPGGPLFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAILGLF 240
           GKQYFLGLERFLGGSGDPAYPGGPLFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAILGLF
Sbjct: 181 GKQYFLGLERFLGGSGDPAYPGGPLFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAILGLF 240

Query: 241 IQGLVTGVGPYQNLLNHLSDPINNNLLTSLKFH 261
           IQGLVTGVGPYQNLL+HLSDPINNNLLTSLKFH
Sbjct: 241 IQGLVTGVGPYQNLLDHLSDPINNNLLTSLKFH 273

[Close]

BLAST of Carg17836 vs. NCBI nr
Match: XP_023515627.1 (photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 478.0 bits (1229), Expect = 5.1e-131
Identity = 240/273 (87.91%), Postives = 250/273 (91.58%), Query Frame = 0


Query: 1   MATQALVSSSLTSTVGAARQRFGPKPCLGSSTKQASFVVRAEATPPVKQTEHYGL-LQNK 60
           MATQALVSSSLTS+VGAARQRFG KPCLGSSTKQASFVVRAEATPPVKQ  +  L   +K
Sbjct: 1   MATQALVSSSLTSSVGAARQRFGAKPCLGSSTKQASFVVRAEATPPVKQGANRALWFASK 60

Query: 61  AFLTWME------------GLSDPEGTGGFIEPRWLAYGEVINGRFAMLGVIGAIAPEIL 120
             L++++            GLSDPEGTGGFIEPRWLAYGEVINGRFAMLGV+GAIAPEIL
Sbjct: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGVVGAIAPEIL 120

Query: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSM 180
           GSLGLIP ETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSM
Sbjct: 121 GSLGLIPQETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSM 180

Query: 181 GKQYFLGLERFLGGSGDPAYPGGPLFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAILGLF 240
           GKQYFLG+ERFLGGSGDPAYPGGPLFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAILGLF
Sbjct: 181 GKQYFLGVERFLGGSGDPAYPGGPLFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAILGLF 240

Query: 241 IQGLVTGVGPYQNLLNHLSDPINNNLLTSLKFH 261
           IQGLVTGVGPYQNLL+HLSDPINNNLLTSLKFH
Sbjct: 241 IQGLVTGVGPYQNLLDHLSDPINNNLLTSLKFH 273

[Close]

BLAST of Carg17836 vs. NCBI nr
Match: XP_022988182.1 (photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic-like [Cucurbita maxima] >XP_022988183.1 photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 473.8 bits (1218), Expect = 9.6e-130
Identity = 237/273 (86.81%), Postives = 248/273 (90.84%), Query Frame = 0


Query: 1   MATQALVSSSLTSTVGAARQRFGPKPCLGSSTKQASFVVRAEATPPVKQTEHYGL-LQNK 60
           MAT+ALVSSSLTS+ GAARQRFG KPCLGSSTKQASFVVRAEATPPVKQ  +  L   +K
Sbjct: 1   MATRALVSSSLTSSGGAARQRFGAKPCLGSSTKQASFVVRAEATPPVKQGANRALWFASK 60

Query: 61  AFLTWME------------GLSDPEGTGGFIEPRWLAYGEVINGRFAMLGVIGAIAPEIL 120
             L++++            GLSDPEGTGGFIEPRWLAYGEVINGRFAMLGV+GAIAPEIL
Sbjct: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGVVGAIAPEIL 120

Query: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSM 180
           GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSM
Sbjct: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSM 180

Query: 181 GKQYFLGLERFLGGSGDPAYPGGPLFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAILGLF 240
           GKQYFLGLERFLGGSGDPAYPGGPLFNPLGFGKDEKSM DLKLKEVKNGRLAMLAILG F
Sbjct: 181 GKQYFLGLERFLGGSGDPAYPGGPLFNPLGFGKDEKSMNDLKLKEVKNGRLAMLAILGFF 240

Query: 241 IQGLVTGVGPYQNLLNHLSDPINNNLLTSLKFH 261
           IQGLVTGVGPYQNLL+HLSDP+NNNLLTSLKFH
Sbjct: 241 IQGLVTGVGPYQNLLDHLSDPLNNNLLTSLKFH 273

[Close]

BLAST of Carg17836 vs. NCBI nr
Match: XP_038879830.1 (photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic [Benincasa hispida])

HSP 1 Score: 456.1 bits (1172), Expect = 2.1e-124
Identity = 228/273 (83.52%), Postives = 240/273 (87.91%), Query Frame = 0


Query: 1   MATQALVSSSLTSTVGAARQRFGPKPCLGSSTKQASFVVRAEATPPVKQTEHYGL-LQNK 60
           MATQALVSSSLTS+VGAARQR G KP  GSS K ASFVVRAEATPPVKQ     L   +K
Sbjct: 1   MATQALVSSSLTSSVGAARQRLGAKPSFGSSRKAASFVVRAEATPPVKQGADRQLWFASK 60

Query: 61  AFLTWME------------GLSDPEGTGGFIEPRWLAYGEVINGRFAMLGVIGAIAPEIL 120
             L++++            GLSDPEGTGGFIEPRWLAYGEVINGRFAMLG  GAIAPEI 
Sbjct: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEIF 120

Query: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSM 180
           GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFV EMALMGFAEHRRFQDWAKPGSM
Sbjct: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWAKPGSM 180

Query: 181 GKQYFLGLERFLGGSGDPAYPGGPLFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAILGLF 240
           GKQYFLGLE+FLGGSGDPAYPGGPLFNPLGFGKDEKS+KDLKLKEVKNGRLAMLAILG F
Sbjct: 181 GKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYF 240

Query: 241 IQGLVTGVGPYQNLLNHLSDPINNNLLTSLKFH 261
           +QGLVTGVGPYQNLL+HLSDP+NNN+LTSLKFH
Sbjct: 241 VQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 273

[Close]

BLAST of Carg17836 vs. ExPASy Swiss-Prot
Match: Q9SY97 (Photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA3 PE=1 SV=1)

HSP 1 Score: 410.6 bits (1054), Expect = 1.3e-113
Identity = 206/273 (75.46%), Postives = 227/273 (83.15%), Query Frame = 0


Query: 1   MATQALVSSSLTSTVGAARQRFGPKPCLGSSTKQASFVVRAEATPPVKQTEHYGL-LQNK 60
           MA QALVSSSLTS+V  ARQ FG KP   +S K++SFVV+A ATPPVKQ  +  L   + 
Sbjct: 1   MAAQALVSSSLTSSVQTARQIFGSKPVASASQKKSSFVVKAAATPPVKQGANRPLWFASS 60

Query: 61  AFLTWME------------GLSDPEGTGGFIEPRWLAYGEVINGRFAMLGVIGAIAPEIL 120
             L++++            GLSDPEGTGGFIEPRWLAYGE+INGRFAMLG  GAIAPEIL
Sbjct: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEIL 120

Query: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSM 180
           G  GLIP ETALPWF+TGVIPPAGTY YWAD YTLFVLEMALMGFAEHRR QDW  PGSM
Sbjct: 121 GKAGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSM 180

Query: 181 GKQYFLGLERFLGGSGDPAYPGGPLFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAILGLF 240
           GKQYFLGLE+ L GSG+PAYPGGP FNPLGFGKDEKS+K+LKLKEVKNGRLAMLAILG F
Sbjct: 181 GKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYF 240

Query: 241 IQGLVTGVGPYQNLLNHLSDPINNNLLTSLKFH 261
           IQGLVTGVGPYQNLL+HL+DP+NNN+LTSLKFH
Sbjct: 241 IQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273

[Close]

BLAST of Carg17836 vs. ExPASy Swiss-Prot
Match: P27522 (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB8 PE=3 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 7.2e-112
Identity = 209/274 (76.28%), Postives = 229/274 (83.58%), Query Frame = 0


Query: 1   MATQALVSSSLTST-VGAARQRFGPKPCLGSSTKQASFVVRAEATPPVKQTEHYGL-LQN 60
           MATQAL+SSS  ST   AARQ  G +    S T++ASFVVRA +TPPVKQ  +  L   +
Sbjct: 1   MATQALISSSSISTSAEAARQIIGSR-ISQSVTRKASFVVRAASTPPVKQGANRQLWFAS 60

Query: 61  KAFLTWME------------GLSDPEGTGGFIEPRWLAYGEVINGRFAMLGVIGAIAPEI 120
           K  L++++            GLSDPEGTGGFIEP+WLAYGEVINGRFAMLG  GAIAPEI
Sbjct: 61  KQSLSYLDGRLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEI 120

Query: 121 LGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGS 180
           LG  GLIP ETAL WF+TGVIPPAGTYNYWAD YTLFVLEMALMGFAEHRRFQDWAKPGS
Sbjct: 121 LGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGS 180

Query: 181 MGKQYFLGLERFLGGSGDPAYPGGPLFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAILGL 240
           MGKQYFLGLE+ LGGSGDPAYPGGPLFNPLGFGKDEKSMK+LKLKE+KNGRLAMLAILG 
Sbjct: 181 MGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGY 240

Query: 241 FIQGLVTGVGPYQNLLNHLSDPINNNLLTSLKFH 261
           FIQ LVTGVGPYQNLL+HL+DP+NNN+LTSLKFH
Sbjct: 241 FIQALVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273

[Close]

BLAST of Carg17836 vs. ExPASy Swiss-Prot
Match: Q32904 (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum OX=3888 GN=lhca3 PE=1 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 8.3e-108
Identity = 201/275 (73.09%), Postives = 221/275 (80.36%), Query Frame = 0


Query: 1   MATQALV-SSSLTSTVGAARQRFGPKPCLGSSTKQASFVVRAEATPPVKQ--TEHYGLLQ 60
           MATQALV SSSLT    A RQ F  +    S       +VRA ATPPVKQ   +      
Sbjct: 1   MATQALVSSSSLTFAAEAVRQSFRARSLPSSVGCSRKGLVRAAATPPVKQGGVDRPLWFA 60

Query: 61  NKAFLTWME------------GLSDPEGTGGFIEPRWLAYGEVINGRFAMLGVIGAIAPE 120
           +K  L++++            GLSDPEGTGGFIEPRWLAYGEVINGRFAMLG +GAIAPE
Sbjct: 61  SKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPE 120

Query: 121 ILGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPG 180
            LG +GLIP ETAL WF+TGVIPPAGTYNYWAD YTLFVLEMALMGFAEHRRFQDWAKPG
Sbjct: 121 YLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPG 180

Query: 181 SMGKQYFLGLERFLGGSGDPAYPGGPLFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAILG 240
           SMGKQYFLGLE+  GGSG+PAYPGGP FNPLGFGKDEKS+K+LKLKEVKNGRLAMLAILG
Sbjct: 181 SMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILG 240

Query: 241 LFIQGLVTGVGPYQNLLNHLSDPINNNLLTSLKFH 261
            FIQGLVTGVGPYQNLL+H++DP+NNN+LTSLKFH
Sbjct: 241 YFIQGLVTGVGPYQNLLDHVADPVNNNVLTSLKFH 275

[Close]

BLAST of Carg17836 vs. ExPASy Swiss-Prot
Match: Q9C639 (Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA5 PE=1 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 8.4e-36
Identity = 88/214 (41.12%), Postives = 125/214 (58.41%), Query Frame = 0


Query: 63  TWMEGLS---------------DPEGTGGFIEP-RWLAYGEVINGRFAMLGVIGAIAPEI 122
           TW+ GL+               DP G G   E  +W    E+++ RFAMLGV G +  ++
Sbjct: 48  TWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDL 107

Query: 123 LGSLGLIPPETALP-WFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPG 182
           L + G+      LP W++ G +     +++ A   TL V++  LMGFAE +R+ D+  PG
Sbjct: 108 LRTTGI----RNLPVWYEAGAV----KFDF-ASTKTLIVVQFLLMGFAETKRYMDFVSPG 167

Query: 183 SMGKQ--YFLGLERFLGGSGDPAYPGGPLFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAI 242
           S  K+  +F GLE  L G  +P YPGGPL NPLG  KD ++  D KLKE+KNGRLAM+A+
Sbjct: 168 SQAKEGSFFFGLEAALEGL-EPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAM 227

Query: 243 LGLFIQGLVTGVGPYQNLLNHLSDPINNNLLTSL 258
           LG F+Q  VT  GP  NL+ HLS+P +  ++ +L
Sbjct: 228 LGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQTL 251

[Close]

BLAST of Carg17836 vs. ExPASy Swiss-Prot
Match: P27521 (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA4 PE=1 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.1e-30
Identity = 96/250 (38.40%), Postives = 129/250 (51.60%), Query Frame = 0


Query: 28  LGSSTKQASFVVRAEATPPVKQTEHYGLLQNKAFLTWMEGLSDPE-------GTGGFIEP 87
           +GSS K +SF V A      K+ E            W+ GL+ P+       G  GF +P
Sbjct: 39  IGSSAKTSSFKVEA------KKGE------------WLPGLASPDYLTGSLAGDNGF-DP 98

Query: 88  ----------RWLAYGEVINGRFAMLGVIGAIAPEILGSLGLI-PPETALPWFKTGVIPP 147
                     +W    E++NGR+AMLGV G + PE+   +G+I  PE    W+       
Sbjct: 99  LGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPE----WY------D 158

Query: 148 AGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSMG-----KQYFLGLERFLGGSGD 207
           AG   Y+A   TLFV+E  L  + E RR+QD   PGS+      KQY L         G+
Sbjct: 159 AGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSL-------PKGE 218

Query: 208 PAYPGGPLFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAILGLFIQGLVTGVGPYQNLLNH 255
             YPGG +FNPL F   +++    K KE+ NGRLAMLA LG  +Q  VTG GP++NLL H
Sbjct: 219 VGYPGG-IFNPLNFAPTQEA----KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQH 247

[Close]

BLAST of Carg17836 vs. ExPASy TrEMBL
Match: A0A6J1H7Y6 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111461357 PE=3 SV=1)

HSP 1 Score: 485.3 bits (1248), Expect = 1.6e-133
Identity = 243/273 (89.01%), Postives = 252/273 (92.31%), Query Frame = 0


Query: 1   MATQALVSSSLTSTVGAARQRFGPKPCLGSSTKQASFVVRAEATPPVKQTEHYGL-LQNK 60
           MATQALVSSSLTS+VGAARQRFGPKPCLGSSTKQASFVVRAEATPPVKQ  +  L   +K
Sbjct: 1   MATQALVSSSLTSSVGAARQRFGPKPCLGSSTKQASFVVRAEATPPVKQGANRALWFASK 60

Query: 61  AFLTWME------------GLSDPEGTGGFIEPRWLAYGEVINGRFAMLGVIGAIAPEIL 120
             L++++            GLSDPEGTGGFIEPRWLAYGEVINGRFAMLGV+GAIAPEIL
Sbjct: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGVVGAIAPEIL 120

Query: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSM 180
           GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSM
Sbjct: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSM 180

Query: 181 GKQYFLGLERFLGGSGDPAYPGGPLFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAILGLF 240
           GKQYFLGLERFLGGSGDPAYPGGPLFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAILGLF
Sbjct: 181 GKQYFLGLERFLGGSGDPAYPGGPLFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAILGLF 240

Query: 241 IQGLVTGVGPYQNLLNHLSDPINNNLLTSLKFH 261
           IQGLVTGVGPYQNLL+HLSDPINNNLLTSLKFH
Sbjct: 241 IQGLVTGVGPYQNLLDHLSDPINNNLLTSLKFH 273

[Close]

BLAST of Carg17836 vs. ExPASy TrEMBL
Match: A0A6J1JLI6 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111485500 PE=3 SV=1)

HSP 1 Score: 473.8 bits (1218), Expect = 4.7e-130
Identity = 237/273 (86.81%), Postives = 248/273 (90.84%), Query Frame = 0


Query: 1   MATQALVSSSLTSTVGAARQRFGPKPCLGSSTKQASFVVRAEATPPVKQTEHYGL-LQNK 60
           MAT+ALVSSSLTS+ GAARQRFG KPCLGSSTKQASFVVRAEATPPVKQ  +  L   +K
Sbjct: 1   MATRALVSSSLTSSGGAARQRFGAKPCLGSSTKQASFVVRAEATPPVKQGANRALWFASK 60

Query: 61  AFLTWME------------GLSDPEGTGGFIEPRWLAYGEVINGRFAMLGVIGAIAPEIL 120
             L++++            GLSDPEGTGGFIEPRWLAYGEVINGRFAMLGV+GAIAPEIL
Sbjct: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGVVGAIAPEIL 120

Query: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSM 180
           GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSM
Sbjct: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSM 180

Query: 181 GKQYFLGLERFLGGSGDPAYPGGPLFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAILGLF 240
           GKQYFLGLERFLGGSGDPAYPGGPLFNPLGFGKDEKSM DLKLKEVKNGRLAMLAILG F
Sbjct: 181 GKQYFLGLERFLGGSGDPAYPGGPLFNPLGFGKDEKSMNDLKLKEVKNGRLAMLAILGFF 240

Query: 241 IQGLVTGVGPYQNLLNHLSDPINNNLLTSLKFH 261
           IQGLVTGVGPYQNLL+HLSDP+NNNLLTSLKFH
Sbjct: 241 IQGLVTGVGPYQNLLDHLSDPLNNNLLTSLKFH 273

[Close]

BLAST of Carg17836 vs. ExPASy TrEMBL
Match: A0A5D3DX73 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00280 PE=3 SV=1)

HSP 1 Score: 455.7 bits (1171), Expect = 1.3e-124
Identity = 228/273 (83.52%), Postives = 240/273 (87.91%), Query Frame = 0


Query: 1   MATQALVSSSLTSTVGAARQRFGPKPCLGSSTKQASFVVRAEATPPVKQTEHYGL-LQNK 60
           MATQALVSSSLTS+VGAARQR G KP  GSS K ASFVVRA ATPPVKQ     L   +K
Sbjct: 1   MATQALVSSSLTSSVGAARQRLGAKPSFGSSRKSASFVVRAGATPPVKQGADRQLWFASK 60

Query: 61  AFLTWME------------GLSDPEGTGGFIEPRWLAYGEVINGRFAMLGVIGAIAPEIL 120
             LT+++            GLSDPEGTGGFIEP+WLAYGEVINGRFAMLG  GAIAPEI 
Sbjct: 61  QSLTYLDGSLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIF 120

Query: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSM 180
           GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSM
Sbjct: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSM 180

Query: 181 GKQYFLGLERFLGGSGDPAYPGGPLFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAILGLF 240
           GKQYFLGLE+FLGGSGDPAYPGGPLFNPLGFGKDEKSMK+LKLKE+KNGRLAMLAILG F
Sbjct: 181 GKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYF 240

Query: 241 IQGLVTGVGPYQNLLNHLSDPINNNLLTSLKFH 261
           IQGLVTGVGPYQNLL+HLSDP+NNN+LTSLKFH
Sbjct: 241 IQGLVTGVGPYQNLLDHLSDPVNNNILTSLKFH 273

[Close]

BLAST of Carg17836 vs. ExPASy TrEMBL
Match: A0A6J1DIF2 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111020769 PE=3 SV=1)

HSP 1 Score: 455.7 bits (1171), Expect = 1.3e-124
Identity = 225/273 (82.42%), Postives = 243/273 (89.01%), Query Frame = 0


Query: 1   MATQALVSSSLTSTVGAARQRFGPKPCLGSSTKQASFVVRAEATPPVKQTEHYGL-LQNK 60
           MATQALVSSSLTS+VGAAR RFG +P  GSS K ASFVVRAEATPPVKQ  +  L   +K
Sbjct: 1   MATQALVSSSLTSSVGAARHRFGARPSFGSSRKSASFVVRAEATPPVKQGANRQLWFASK 60

Query: 61  AFLTWME------------GLSDPEGTGGFIEPRWLAYGEVINGRFAMLGVIGAIAPEIL 120
             L++++            GLSDPEGTGGFIEP+WLAYGEVINGR+AMLGV+GAIAPEIL
Sbjct: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGVVGAIAPEIL 120

Query: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSM 180
           GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFV EMALMGFAEHRRFQDWA PGSM
Sbjct: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWANPGSM 180

Query: 181 GKQYFLGLERFLGGSGDPAYPGGPLFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAILGLF 240
           GKQYFLGLE+FLGGSG+PAYPGGPLFNPLGFGKDEKS+KDLKLKEVKNGRLAMLAILG F
Sbjct: 181 GKQYFLGLEKFLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGFF 240

Query: 241 IQGLVTGVGPYQNLLNHLSDPINNNLLTSLKFH 261
           +QGLVTGVGPYQNLL+HLSDP+NNN+LTSLKFH
Sbjct: 241 VQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 273

[Close]

BLAST of Carg17836 vs. ExPASy TrEMBL
Match: A0A1S3BPK7 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491949 PE=3 SV=1)

HSP 1 Score: 455.7 bits (1171), Expect = 1.3e-124
Identity = 228/273 (83.52%), Postives = 240/273 (87.91%), Query Frame = 0


Query: 1   MATQALVSSSLTSTVGAARQRFGPKPCLGSSTKQASFVVRAEATPPVKQTEHYGL-LQNK 60
           MATQALVSSSLTS+VGAARQR G KP  GSS K ASFVVRA ATPPVKQ     L   +K
Sbjct: 1   MATQALVSSSLTSSVGAARQRLGAKPSFGSSRKSASFVVRAGATPPVKQGADRQLWFASK 60

Query: 61  AFLTWME------------GLSDPEGTGGFIEPRWLAYGEVINGRFAMLGVIGAIAPEIL 120
             LT+++            GLSDPEGTGGFIEP+WLAYGEVINGRFAMLG  GAIAPEI 
Sbjct: 61  QSLTYLDGSLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIF 120

Query: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSM 180
           GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSM
Sbjct: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSM 180

Query: 181 GKQYFLGLERFLGGSGDPAYPGGPLFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAILGLF 240
           GKQYFLGLE+FLGGSGDPAYPGGPLFNPLGFGKDEKSMK+LKLKE+KNGRLAMLAILG F
Sbjct: 181 GKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYF 240

Query: 241 IQGLVTGVGPYQNLLNHLSDPINNNLLTSLKFH 261
           IQGLVTGVGPYQNLL+HLSDP+NNN+LTSLKFH
Sbjct: 241 IQGLVTGVGPYQNLLDHLSDPVNNNILTSLKFH 273

[Close]

BLAST of Carg17836 vs. TAIR 10
Match: AT1G61520.1 (photosystem I light harvesting complex gene 3 )

HSP 1 Score: 410.6 bits (1054), Expect = 9.3e-115
Identity = 206/273 (75.46%), Postives = 227/273 (83.15%), Query Frame = 0


Query: 1   MATQALVSSSLTSTVGAARQRFGPKPCLGSSTKQASFVVRAEATPPVKQTEHYGL-LQNK 60
           MA QALVSSSLTS+V  ARQ FG KP   +S K++SFVV+A ATPPVKQ  +  L   + 
Sbjct: 1   MAAQALVSSSLTSSVQTARQIFGSKPVASASQKKSSFVVKAAATPPVKQGANRPLWFASS 60

Query: 61  AFLTWME------------GLSDPEGTGGFIEPRWLAYGEVINGRFAMLGVIGAIAPEIL 120
             L++++            GLSDPEGTGGFIEPRWLAYGE+INGRFAMLG  GAIAPEIL
Sbjct: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEIL 120

Query: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSM 180
           G  GLIP ETALPWF+TGVIPPAGTY YWAD YTLFVLEMALMGFAEHRR QDW  PGSM
Sbjct: 121 GKAGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSM 180

Query: 181 GKQYFLGLERFLGGSGDPAYPGGPLFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAILGLF 240
           GKQYFLGLE+ L GSG+PAYPGGP FNPLGFGKDEKS+K+LKLKEVKNGRLAMLAILG F
Sbjct: 181 GKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYF 240

Query: 241 IQGLVTGVGPYQNLLNHLSDPINNNLLTSLKFH 261
           IQGLVTGVGPYQNLL+HL+DP+NNN+LTSLKFH
Sbjct: 241 IQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273

[Close]

BLAST of Carg17836 vs. TAIR 10
Match: AT1G61520.3 (photosystem I light harvesting complex gene 3 )

HSP 1 Score: 410.6 bits (1054), Expect = 9.3e-115
Identity = 206/273 (75.46%), Postives = 227/273 (83.15%), Query Frame = 0


Query: 1   MATQALVSSSLTSTVGAARQRFGPKPCLGSSTKQASFVVRAEATPPVKQTEHYGL-LQNK 60
           MA QALVSSSLTS+V  ARQ FG KP   +S K++SFVV+A ATPPVKQ  +  L   + 
Sbjct: 1   MAAQALVSSSLTSSVQTARQIFGSKPVASASQKKSSFVVKAAATPPVKQGANRPLWFASS 60

Query: 61  AFLTWME------------GLSDPEGTGGFIEPRWLAYGEVINGRFAMLGVIGAIAPEIL 120
             L++++            GLSDPEGTGGFIEPRWLAYGE+INGRFAMLG  GAIAPEIL
Sbjct: 61  QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEIL 120

Query: 121 GSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSM 180
           G  GLIP ETALPWF+TGVIPPAGTY YWAD YTLFVLEMALMGFAEHRR QDW  PGSM
Sbjct: 121 GKAGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSM 180

Query: 181 GKQYFLGLERFLGGSGDPAYPGGPLFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAILGLF 240
           GKQYFLGLE+ L GSG+PAYPGGP FNPLGFGKDEKS+K+LKLKEVKNGRLAMLAILG F
Sbjct: 181 GKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYF 240

Query: 241 IQGLVTGVGPYQNLLNHLSDPINNNLLTSLKFH 261
           IQGLVTGVGPYQNLL+HL+DP+NNN+LTSLKFH
Sbjct: 241 IQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273

[Close]

BLAST of Carg17836 vs. TAIR 10
Match: AT1G61520.2 (photosystem I light harvesting complex gene 3 )

HSP 1 Score: 362.5 bits (929), Expect = 2.9e-100
Identity = 170/194 (87.63%), Postives = 180/194 (92.78%), Query Frame = 0


Query: 67  GLSDPEGTGGFIEPRWLAYGEVINGRFAMLGVIGAIAPEILGSLGLIPPETALPWFKTGV 126
           GLSDPEGTGGFIEPRWLAYGE+INGRFAMLG  GAIAPEILG  GLIP ETALPWF+TGV
Sbjct: 25  GLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGV 84

Query: 127 IPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLERFLGGSGDPA 186
           IPPAGTY YWAD YTLFVLEMALMGFAEHRR QDW  PGSMGKQYFLGLE+ L GSG+PA
Sbjct: 85  IPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPA 144

Query: 187 YPGGPLFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAILGLFIQGLVTGVGPYQNLLNHLS 246
           YPGGP FNPLGFGKDEKS+K+LKLKEVKNGRLAMLAILG FIQGLVTGVGPYQNLL+HL+
Sbjct: 145 YPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLA 204

Query: 247 DPINNNLLTSLKFH 261
           DP+NNN+LTSLKFH
Sbjct: 205 DPVNNNVLTSLKFH 218

[Close]

BLAST of Carg17836 vs. TAIR 10
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 152.1 bits (383), Expect = 6.0e-37
Identity = 88/214 (41.12%), Postives = 125/214 (58.41%), Query Frame = 0


Query: 63  TWMEGLS---------------DPEGTGGFIEP-RWLAYGEVINGRFAMLGVIGAIAPEI 122
           TW+ GL+               DP G G   E  +W    E+++ RFAMLGV G +  ++
Sbjct: 48  TWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDL 107

Query: 123 LGSLGLIPPETALP-WFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPG 182
           L + G+      LP W++ G +     +++ A   TL V++  LMGFAE +R+ D+  PG
Sbjct: 108 LRTTGI----RNLPVWYEAGAV----KFDF-ASTKTLIVVQFLLMGFAETKRYMDFVSPG 167

Query: 183 SMGKQ--YFLGLERFLGGSGDPAYPGGPLFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAI 242
           S  K+  +F GLE  L G  +P YPGGPL NPLG  KD ++  D KLKE+KNGRLAM+A+
Sbjct: 168 SQAKEGSFFFGLEAALEGL-EPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAM 227

Query: 243 LGLFIQGLVTGVGPYQNLLNHLSDPINNNLLTSL 258
           LG F+Q  VT  GP  NL+ HLS+P +  ++ +L
Sbjct: 228 LGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQTL 251

[Close]

BLAST of Carg17836 vs. TAIR 10
Match: AT1G45474.2 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 152.1 bits (383), Expect = 6.0e-37
Identity = 88/214 (41.12%), Postives = 125/214 (58.41%), Query Frame = 0


Query: 63  TWMEGLS---------------DPEGTGGFIEP-RWLAYGEVINGRFAMLGVIGAIAPEI 122
           TW+ GL+               DP G G   E  +W    E+++ RFAMLGV G +  ++
Sbjct: 48  TWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDL 107

Query: 123 LGSLGLIPPETALP-WFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPG 182
           L + G+      LP W++ G +     +++ A   TL V++  LMGFAE +R+ D+  PG
Sbjct: 108 LRTTGI----RNLPVWYEAGAV----KFDF-ASTKTLIVVQFLLMGFAETKRYMDFVSPG 167

Query: 183 SMGKQ--YFLGLERFLGGSGDPAYPGGPLFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAI 242
           S  K+  +F GLE  L G  +P YPGGPL NPLG  KD ++  D KLKE+KNGRLAM+A+
Sbjct: 168 SQAKEGSFFFGLEAALEGL-EPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAM 227

Query: 243 LGLFIQGLVTGVGPYQNLLNHLSDPINNNLLTSL 258
           LG F+Q  VT  GP  NL+ HLS+P +  ++ +L
Sbjct: 228 LGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQTL 251

The following BLAST results are available for this feature:

BLAST of Carg17836 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6590140.1	6.0e-148	100.00	Chlorophyll a-b binding protein 8, chloroplastic, partial [Cucurbita argyrosperm...	[more]
XP_022960627.1	3.2e-133	89.01	photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic-like [Cucurbita...	[more]
XP_023515627.1	5.1e-131	87.91	photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic-like [Cucurbita...	[more]
XP_022988182.1	9.6e-130	86.81	photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic-like [Cucurbita...	[more]
XP_038879830.1	2.1e-124	83.52	photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic [Benincasa hisp...	[more]

BLAST of Carg17836 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SY97	1.3e-113	75.46	Photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic OS=Arabidopsis ...	[more]
P27522	7.2e-112	76.28	Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum OX=4081...	[more]
Q32904	8.3e-108	73.09	Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum OX=3888 GN=lhc...	[more]
Q9C639	8.4e-36	41.12	Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis th...	[more]
P27521	3.1e-30	38.40	Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of Carg17836 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H7Y6	1.6e-133	89.01	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1JLI6	4.7e-130	86.81	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A5D3DX73	1.3e-124	83.52	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A6J1DIF2	1.3e-124	82.42	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]
A0A1S3BPK7	1.3e-124	83.52	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]

BLAST of Carg17836 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G61520.1	9.3e-115	75.46	photosystem I light harvesting complex gene 3	[more]
AT1G61520.3	9.3e-115	75.46	photosystem I light harvesting complex gene 3	[more]
AT1G61520.2	2.9e-100	87.63	photosystem I light harvesting complex gene 3	[more]
AT1G45474.1	6.0e-37	41.12	photosystem I light harvesting complex gene 5	[more]
AT1G45474.2	6.0e-37	41.12	photosystem I light harvesting complex gene 5	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 72..229 e-value: 1.3E-36 score: 126.6
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 64..259 e-value: 2.4E-51 score: 176.4
None	No IPR available	PANTHER	PTHR21649:SF120	CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC	coord: 1..259
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 70..256
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..259

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17836-RA	Carg17836-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding