Carg17780 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg17780
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 17636475 .. 17639420 (+)
RNA-Seq ExpressionCarg17780
SyntenyCarg17780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAGAGAATGCGAAGAGACGAAAAGAAGATTGCTGTAACAATGGACAAAGAACGGCTGATTTGTTGTCGTCGTTGTCGTCGTCGTCGTTGGCGTCGTCGTTGGCGTCGTCGACGACTCCATTGGCTGAGGAAGAATCTGTTCTACAGGTAAATCGCTCCTAGATTGAGATTTATGTACGGACGGCCTAATTCCTTGGCCTCACTGTCTTTCTAACCCGCTCTTCTAATTAACGGTATGTAACCTTTAATAAAATGTCTTGTTGGGAGCGTGTGCATAGACGTCTCCTTGGGCGCGTGGGAGTGCATGTAAGCCCTATTTCCACTCGATCAACCGTTAGAGAAATTTCACAAATTTTGGAACTCCAAAGCTAGCTCGCATGTTTCACCAAGTGAGTAACCACACCAACTTTAGGCAAGTAATACTTACACACGGATCGCTAGAACGTGCTAGCATGCAGGCATTCTTTACCTAAGATAGTTAGAAAATGCATGTTTAGAACGTCATAAGGGCATTTTTGGATGAGTATGTGTTGTATGTAATATTATGAAAAAATTACTGTTATGCCCCTAGGTTGAGATTTCTAAGAATTTATTATGTAAAGCTAGAATATGAGTTGGATAATATTGATGAGTATGTTATGCTTGATGTAACAAATTACCAATATGCCCCTATAGTGAAATTTGTGATTAATGTTGTATATGTTTTCTGGTGTGTTAGAAAGAAGGATGAACTATTGTGATCTGTATTCTGGGTGATGAATGGATGTAATCTCCCAATTGAGCTTAGTTGCTTGTATGTTTGCATGATATTGTATGTTTTAGTTCAAGGTGTTTGACTGTGTATTCTCTTTGTAAAGCGTATTTGTCTGCACAGAGTAAGGGCATTAGAGTTAGGCTGGCTAGACGATGACCTAAAAGTTAGAACGCATCTAGTAGTCTGAGCACCTTAGGATCGTGAGCGACGATTAGAGGGTTTAGGCCTTAGTGCTCCCAGACTAAGAAAGATTTCAGGAGTTCGAACAGAGCAGCCTGGAGCCAGAAGTCCACGTTAAGCCACCTAGTCATCCTAAGAATCTAATAGATCTCTTCAGCTCCTAGATACGACTAAGGTGAAGTTTAAATTATGGATTATGTGCTTAGGTGATCGATAGGAATATCTCCCTAGCAAAGCATGCATGAGAGAGCTCTATTAAGATTATGGTGCTACATGTAGTGCGGTTTACATGTTGGCCCAGGTCAGTACATATCTTGTAGACCTTGAACCCTAGGATCGTGAGCGATTAGAGGTTTTGACCCGTGTGCACCAAAAGATTGGTCTAGCCTGATGAACTAGCCCCGAATGTTCTAGAAACGAGAAATGAGATTTAAACCACTTAGACGTCCCTAAGAACCTAGTAAACCTCTACTAAATCTAAATACGACTAAGCAAGCTTAACATAATTTGAAACCACTTGAGAGAGATACAATGGACAACACGAGTAGTTATCAAGATGAGAACTCCTACTCTGTGTAGAAACTGGCCAAGGCCTGTAAGCCCGCCTTGAGAGGGGACGAGAGACTACATGAGTAGGTGATGTGAGGAATTACCACTATGTGTAGAAACGGGTCAAGACTTGTAAACTTTTCTTGAGAGGGGACGAGAGACTATATGAGTGGGTAACATGATGAACTGCTATTGTATGTAGAAATGAATCAAAGTCCATAAACCTACCTTGAGATGGGTCGAGGGACTACATTAGTAGAGGACACAAGGAACTACTACTGTATCTAAATATAAACACACATTGAGATGGATCGAGGGACTACATAAGTAGAAAACAAGAAGAACCACTAGTATATGTAGAATAAACCCGCCTTGAGAGGGGACGAGGGACTACATATGTAGATGATATCACGATCTTATATGGTTACAGTTACGAGAATCGTGAACTAGGCCAACTTCTTGGGGACCTAGGTTGCTTACTAGGTATATCTATATTGAAACGACCCAGGCCCACCGCTAGCAGATATTGTCCTCTTTGGGCTTTCCCTTTTGAGCTTCCCCTTAAGGCTTTAAAACGCGTATGCTAAGGGAAGATTTCCACACACTTATAAATGGTGGTTTGTTCTCCTCTCCAACCAATGTGGGACATCACAATCCACCCCCCTTCGGGGCCCAGCGTCCTCGTTGGCACTCTTTCCTTCCTCCAATCGATGTGGGACCGCCTCCAAATCCACCTTTGGGGCCCTACTGGCACACCGCCTTGTGTCTACTCCCCTTCGAGAAATAGCGAGAAGGCTGGCATATTGTTCGGAACCTGGTTCTGATACCATTTGTAACGACCCAGACCCACTGCTACCAGATATTGTCTTTTTTGGGCTTTCCCTTTCGAGCTTCCCCTTAATGCTTTAAAACGCGTTTGCTAGGGGAAGGTTTCCACACCTTTATAAATGGTGGTTTGTTCTCCTCCCCAACCAATGATGGACATCACATATATACTCATCCCTTCTCTGACTGCTGGTTGAGGCAGAGAGTGTTCGAGAGCTGTGCAGTTATCTAGAGCTGCGCAGGTATAAGTATCTAAGAAAAATAAAATTAAAATTGAAAAAATAAAGGAGGCACTAAATAAAAGTAGAGAGTATTTTTTATAATTTAACATTTTTAATTTTATAAATTTTAATTTTTGGACCTATAATATAATCCCATCGATATTCCGGACGCCCATTGCGCCGAAAAACCTCCGAGAGGAAGAAGAACAAGAACATCGCAGGAGTGCAAATTCCAGGTCGTTCCAACAATCTGTGCGTCGCTAAAAGATCGTTTCTCAGTTCATAACCTGCATGATCATCTGAGTTACTTCATCGCAAATTTCGCAGATTTTACTGCGAATCCTTCTCAGAATGAAAGAGCCCAATGGAACAACCCCAAAACGCTTCTGGAATCCAAGCTTCAGCTTCGTGTAA

mRNA sequence

ATGTTAGAGAATGCGAAGAGACGAAAAGAAGATTGCTGTAACAATGGACAAAGAACGGCTGATTTGTTGTCGTCGTTGTCGTCGTCGTCGTTGGCGTCGTCGTTGGCGTCGTCGACGACTCCATTGGCTGAGGAAGAATCTGTTCTACAGATTTTACTGCGAATCCTTCTCAGAATGAAAGAGCCCAATGGAACAACCCCAAAACGCTTCTGGAATCCAAGCTTCAGCTTCGTGTAA

Coding sequence (CDS)

ATGTTAGAGAATGCGAAGAGACGAAAAGAAGATTGCTGTAACAATGGACAAAGAACGGCTGATTTGTTGTCGTCGTTGTCGTCGTCGTCGTTGGCGTCGTCGTTGGCGTCGTCGACGACTCCATTGGCTGAGGAAGAATCTGTTCTACAGATTTTACTGCGAATCCTTCTCAGAATGAAAGAGCCCAATGGAACAACCCCAAAACGCTTCTGGAATCCAAGCTTCAGCTTCGTGTAA

Protein sequence

MLENAKRRKEDCCNNGQRTADLLSSLSSSSLASSLASSTTPLAEEESVLQILLRILLRMKEPNGTTPKRFWNPSFSFV
Homology
[Close]
BLAST of Carg17780 vs. NCBI nr
Match: KAG7032684.1 (hypothetical protein SDJN02_06734, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.8 bits (377), Expect = 9.6e-33
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MLENAKRRKEDCCNNGQRTADLLSSLSSSSLASSLASSTTPLAEEESVLQILLRILLRMK 60
          MLENAKRRKEDCCNNGQRTADLLSSLSSSSLASSLASSTTPLAEEESVLQILLRILLRMK
Sbjct: 1  MLENAKRRKEDCCNNGQRTADLLSSLSSSSLASSLASSTTPLAEEESVLQILLRILLRMK 60

Query: 61 EPNGTTPKRFWNPSFSFV 79
          EPNGTTPKRFWNPSFSFV
Sbjct: 61 EPNGTTPKRFWNPSFSFV 78

[Close]
BLAST of Carg17780 vs. NCBI nr
Match: KAG6601986.1 (hypothetical protein SDJN03_07219, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 133.7 bits (335), Expect = 7.1e-28
Identity = 72/78 (92.31%), Postives = 72/78 (92.31%), Query Frame = 0 

Query: 1  MLENAKRRKEDCCNNGQRTADLLSSLSSSSLASSLASSTTPLAEEESVLQILLRILLRMK 60
          MLENAKRRKEDCCNNGQRTADLLSSLSS    SS ASSTTPLAEEESVLQILLR LLRMK
Sbjct: 1  MLENAKRRKEDCCNNGQRTADLLSSLSS----SSSASSTTPLAEEESVLQILLRNLLRMK 60

Query: 61 EPNGTTPKRFWNPSFSFV 79
          EPNGTTPKRFWNPSFSFV
Sbjct: 61 EPNGTTPKRFWNPSFSFV 74

The following BLAST results are available for this feature:
BLAST of Carg17780 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7032684.19.6e-33100.00hypothetical protein SDJN02_06734, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6601986.17.1e-2892.31hypothetical protein SDJN03_07219, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg17780 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg17780 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg17780 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17780-RACarg17780-RAmRNA