Carg17766 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg17766
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	high mobility group B protein 7-like
Location	Carg_Chr04: 17529404 .. 17531552 (-)
RNA-Seq Expression	Carg17766
Synteny	Carg17766

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTCACCGATTCAGCGGCGGAGAAGAGGAAATGGCCGTTCGAAGATCGTCGAGTTCGAGGAAGAGAGTGGATGCTGCTCCCTCCGACGCCGCCACCACTGGTCCTTCCCTTGTGAGAGCCAAAGACGGCAGTGCTTTTGCTCGATGGTGCGTGTTTCTTTCCATTTTCTCTATGGATGTTATGGTTTGTACACCGACTGGTTGGAGAGCTAAAGAGGACGGAGTCACATTCCTGAATCTTTGTAACTTGTTTTCTTTATGCTTTGATTTCTACGTTGGTTGAATCGGCGTCTGTGTTACACTTTCCTAACACTCCATTTCTTCGAATATTTTCGGAACAAGCTGTGTTTGGAGTGATTTTTGCTTTGGCATTGATAATGTATGCCTTTTTGCTTGCGTTTTAATCCGATTGTGTTTTAAAGTTGAATGAAATATTTGCTTTCGTTATGAATGTTCTTGTTGATGTACGATTATTTCTTACCTTTATAACTTGGCGTTATGAATCGGCGTCTGTGTTACGCTTTCCTAACGCTCCATTTCTTCGAATATTTTCGGAACAAGTTGTGTTTGGAGTGATTTTTGCTTTGGCACTTTTGCATAATGTATTCGCCTTTTTGCTTTGCTTTTATAATCATTGGTGTGTTCGTACTGTACATTCCTAACGTTCCATTTCTTCGATTATTGTCGGAAGAGATTATGGTTTACGGTGTTTTCCTTTTGTTTGTTGTTCATTCAATAATAATGTGTGGTTTCCTGTTCGCATTTTTAGTTTGATTTTGATAGTTAATGAAAACATCATTAAGTTTCTTGACAATGGAAGAATCTGATTTCTCTGATTTGAATGGTTGATTTCTGGCTGTTACAGTGGTGAGTGCGGCAAAAGTGTTCCGGCCGCCCTAATCAGCATGCATAGCTGTAGCCTCGATACCAAAATTAGAATGAATTTAGGTAATATCCGTGTGGATTCGTGAATAATTTTTTTCTTTGGGATTCTTTTCTGATTTAGAACTCTTACTGTTCTCGTTTCCTGCAGAGGCTCAGACTGTCGAGAAGCAAACTCAAGCTAAAAAGCCAGCTGAAAGGTGTCTTATCCGTCGCTATGCTCCTATCTCTGCACGTTTTTCTTTATTCTTACCTGGTTGAGCTGATGTTTTGAGTTAAATTATTTACAGGAAAAGATCAGCACCATCGGAACCAAAAGCCACTAAATCCAAAACGGACAAGAGGAAGAAGAAAGACAAAGATCCAAATGCCCCCAAGCGCCCTCCTACAGCCTTCTTTATCTTCATGTATGCAAATTTCCCTCATTCCTTCTGCTCTCAATTGTCAGAATCATTAGATTTATAGTGTTATTTTCTATTTACTTGAATTTTAACTGAATTTCAAGTAATTGTAATACTTCAGGGAGGACTTCAGAAAGTCATTTAAAGAAGCAAATCCTGATTCTAAAGGCGTTAAAGAGGTTAGCACAGACCCATATCACTTTGTGTAGTAACGGTGAGAGGAGAGAGAAATGAGTGCCAATGAGGACACTGTCACGAAAGGGGTGGATTGTGAGTTCCAATGTTGGTTGGAGAGAAGAATGAAACCTTTTTTATAAGGGTGTGAAAACTTCTTCCTAGTAGACACGTTTTAAAAACTTTTAGGGGAAGGAAGCTCAAAGAGGATAATATCTGTTAGCAGTGGGCTTGGATTGATATAGTAATTATGACGACGGATCAAATTATTGTATGCTCCAGTAATTATGACGAGGGATCAAATTATTGTATGCTCTGTCTCATGATCGAGTATTTCAATCTTTTCAGGTTGCAAAGGAGGGTGGTGAGAAATGGAAATCAATGACTGATGAAGTGAGTTATATTACTTGCCATCTAAAAGCACGTCTATGTTTATGAATTGTGTCATCTAAAACTTAAGCTGATTGAACAGGAGAAGAAGCCTTACCAGGATAAAGCTGCCGAGCTGAAAGCAGAGTACGAAAAAGCCTTGGAAACCCGAAACACTGAGAACGAGGATGTGAGATTTGAGCTCTCAACTATCTGAATCTGTTTGGTTATTCATTCAAATGCTAATGTGGGATCTTTGTTCAGGATGAGAAAGACACAGAAGAGGTTACAGAGAAGGAGGCAGAGAAAGTAACAGATGAGTAA

mRNA sequence

AGTCACCGATTCAGCGGCGGAGAAGAGGAAATGGCCGTTCGAAGATCGTCGAGTTCGAGGAAGAGAGTGGATGCTGCTCCCTCCGACGCCGCCACCACTGGTCCTTCCCTTGTGAGAGCCAAAGACGGCAGTGCTTTTGCTCGATGTGGTGAGTGCGGCAAAAGTGTTCCGGCCGCCCTAATCAGCATGCATAGCTGTAGCCTCGATACCAAAATTAGAATGAATTTAGAGGCTCAGACTGTCGAGAAGCAAACTCAAGCTAAAAAGCCAGCTGAAAGGAAAAGATCAGCACCATCGGAACCAAAAGCCACTAAATCCAAAACGGACAAGAGGAAGAAGAAAGACAAAGATCCAAATGCCCCCAAGCGCCCTCCTACAGCCTTCTTTATCTTCATGGAGGACTTCAGAAAGTCATTTAAAGAAGCAAATCCTGATTCTAAAGGCGTTAAAGAGGTTGCAAAGGAGGGTGGTGAGAAATGGAAATCAATGACTGATGAAGAGAAGAAGCCTTACCAGGATAAAGCTGCCGAGCTGAAAGCAGAGTACGAAAAAGCCTTGGAAACCCGAAACACTGAGAACGAGGATGATGAGAAAGACACAGAAGAGGTTACAGAGAAGGAGGCAGAGAAAGTAACAGATGAGTAA

Coding sequence (CDS)

ATGGCCGTTCGAAGATCGTCGAGTTCGAGGAAGAGAGTGGATGCTGCTCCCTCCGACGCCGCCACCACTGGTCCTTCCCTTGTGAGAGCCAAAGACGGCAGTGCTTTTGCTCGATGTGGTGAGTGCGGCAAAAGTGTTCCGGCCGCCCTAATCAGCATGCATAGCTGTAGCCTCGATACCAAAATTAGAATGAATTTAGAGGCTCAGACTGTCGAGAAGCAAACTCAAGCTAAAAAGCCAGCTGAAAGGAAAAGATCAGCACCATCGGAACCAAAAGCCACTAAATCCAAAACGGACAAGAGGAAGAAGAAAGACAAAGATCCAAATGCCCCCAAGCGCCCTCCTACAGCCTTCTTTATCTTCATGGAGGACTTCAGAAAGTCATTTAAAGAAGCAAATCCTGATTCTAAAGGCGTTAAAGAGGTTGCAAAGGAGGGTGGTGAGAAATGGAAATCAATGACTGATGAAGAGAAGAAGCCTTACCAGGATAAAGCTGCCGAGCTGAAAGCAGAGTACGAAAAAGCCTTGGAAACCCGAAACACTGAGAACGAGGATGATGAGAAAGACACAGAAGAGGTTACAGAGAAGGAGGCAGAGAAAGTAACAGATGAGTAA

Protein sequence

MAVRRSSSSRKRVDAAPSDAATTGPSLVRAKDGSAFARCGECGKSVPAALISMHSCSLDTKIRMNLEAQTVEKQTQAKKPAERKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTAFFIFMEDFRKSFKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALETRNTENEDDEKDTEEVTEKEAEKVTDE

Homology

[Close]

BLAST of Carg17766 vs. NCBI nr
Match: XP_022957271.1 (high mobility group B protein 7-like [Cucurbita moschata] >XP_022957277.1 high mobility group B protein 7-like [Cucurbita moschata] >KAG7032670.1 High mobility group B protein 7 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 368.2 bits (944), Expect = 4.5e-98
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MAVRRSSSSRKRVDAAPSDAATTGPSLVRAKDGSAFARCGECGKSVPAALISMHSCSLDT 60
           MAVRRSSSSRKRVDAAPSDAATTGPSLVRAKDGSAFARCGECGKSVPAALISMHSCSLDT
Sbjct: 1   MAVRRSSSSRKRVDAAPSDAATTGPSLVRAKDGSAFARCGECGKSVPAALISMHSCSLDT 60

Query: 61  KIRMNLEAQTVEKQTQAKKPAERKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTAFFI 120
           KIRMNLEAQTVEKQTQAKKPAERKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTAFFI
Sbjct: 61  KIRMNLEAQTVEKQTQAKKPAERKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTAFFI 120

Query: 121 FMEDFRKSFKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALETRN 180
           FMEDFRKSFKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALETRN
Sbjct: 121 FMEDFRKSFKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALETRN 180

Query: 181 TENEDDEKDTEEVTEKEAEKVTDE 205
           TENEDDEKDTEEVTEKEAEKVTDE
Sbjct: 181 TENEDDEKDTEEVTEKEAEKVTDE 204

[Close]

BLAST of Carg17766 vs. NCBI nr
Match: KAG6601973.1 (High mobility group B protein 7, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 366.3 bits (939), Expect = 1.7e-97
Identity = 203/204 (99.51%), Postives = 203/204 (99.51%), Query Frame = 0


Query: 1   MAVRRSSSSRKRVDAAPSDAATTGPSLVRAKDGSAFARCGECGKSVPAALISMHSCSLDT 60
           MAVRRSSSSRKRVDAAPSDAATTGPSLVRAKDGSAFARCGECGKSVPAALISMHSCSLD 
Sbjct: 1   MAVRRSSSSRKRVDAAPSDAATTGPSLVRAKDGSAFARCGECGKSVPAALISMHSCSLDN 60

Query: 61  KIRMNLEAQTVEKQTQAKKPAERKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTAFFI 120
           KIRMNLEAQTVEKQTQAKKPAERKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTAFFI
Sbjct: 61  KIRMNLEAQTVEKQTQAKKPAERKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTAFFI 120

Query: 121 FMEDFRKSFKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALETRN 180
           FMEDFRKSFKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALETRN
Sbjct: 121 FMEDFRKSFKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALETRN 180

Query: 181 TENEDDEKDTEEVTEKEAEKVTDE 205
           TENEDDEKDTEEVTEKEAEKVTDE
Sbjct: 181 TENEDDEKDTEEVTEKEAEKVTDE 204

[Close]

BLAST of Carg17766 vs. NCBI nr
Match: XP_023529651.1 (high mobility group B protein 7-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 360.5 bits (924), Expect = 9.3e-96
Identity = 199/204 (97.55%), Postives = 202/204 (99.02%), Query Frame = 0


Query: 1   MAVRRSSSSRKRVDAAPSDAATTGPSLVRAKDGSAFARCGECGKSVPAALISMHSCSLDT 60
           MAVRRSSSSRKRVDAAPSDAATTGPSLVRAKDGSAFARC ECGKSVPAALISMHSCSLDT
Sbjct: 1   MAVRRSSSSRKRVDAAPSDAATTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLDT 60

Query: 61  KIRMNLEAQTVEKQTQAKKPAERKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTAFFI 120
           KIRMNLEAQTVEKQTQAKKPAERKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTAFFI
Sbjct: 61  KIRMNLEAQTVEKQTQAKKPAERKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTAFFI 120

Query: 121 FMEDFRKSFKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALETRN 180
           FM+DFRKSFKEANP+SKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALETRN
Sbjct: 121 FMDDFRKSFKEANPESKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALETRN 180

Query: 181 TENEDDEKDTEEVTEKEAEKVTDE 205
            ENEDDEKDTEE+TEKEAEKVTDE
Sbjct: 181 AENEDDEKDTEEITEKEAEKVTDE 204

[Close]

BLAST of Carg17766 vs. NCBI nr
Match: XP_022990806.1 (high mobility group B protein 7-like [Cucurbita maxima])

HSP 1 Score: 351.7 bits (901), Expect = 4.3e-93
Identity = 194/204 (95.10%), Postives = 201/204 (98.53%), Query Frame = 0


Query: 1   MAVRRSSSSRKRVDAAPSDAATTGPSLVRAKDGSAFARCGECGKSVPAALISMHSCSLDT 60
           MAVRRSSSSRKRVDAAPSDAATTGPSLVRAKDGSAFARC ECGKSVPAALISMHSCSLDT
Sbjct: 43  MAVRRSSSSRKRVDAAPSDAATTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLDT 102

Query: 61  KIRMNLEAQTVEKQTQAKKPAERKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTAFFI 120
           KIRMNLEAQTVEKQTQAKKPAERKRSAPSEPKATKSKTDKRKKK+KDPNAPKRPPTAFFI
Sbjct: 103 KIRMNLEAQTVEKQTQAKKPAERKRSAPSEPKATKSKTDKRKKKNKDPNAPKRPPTAFFI 162

Query: 121 FMEDFRKSFKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALETRN 180
           FM+D+RKSFKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEY+KALET+N
Sbjct: 163 FMDDYRKSFKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYKKALETQN 222

Query: 181 TENEDDEKDTEEVTEKEAEKVTDE 205
            ENEDDEKDTEEV E+EAE+VTDE
Sbjct: 223 AENEDDEKDTEEVAEREAEEVTDE 246

[Close]

BLAST of Carg17766 vs. NCBI nr
Match: XP_023550365.1 (high mobility group B protein 7-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 314.7 bits (805), Expect = 5.9e-82
Identity = 177/205 (86.34%), Postives = 190/205 (92.68%), Query Frame = 0


Query: 1   MAVRRSSSSRKRVDAAPSDAATTGPSLVRAKDGSAFARCGECGKSVPAALISMHSCSLDT 60
           MA   SS SRKRV+A P+ AATTGPSLVRAKDGSAFARC ECGKSVPAALISMHSCSLD 
Sbjct: 1   MAGGGSSKSRKRVEATPAAAATTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLDA 60

Query: 61  KIRMNLEAQTVEKQTQAKKPAERKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTAFFI 120
           KIR NLEAQTVEKQTQAKKPAE+KRSAPSEPKA KS+T+KR KKDKDPNAPKRPPTAFF+
Sbjct: 61  KIRTNLEAQTVEKQTQAKKPAEKKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFFV 120

Query: 121 FMEDFRKSFKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKAL-ETR 180
           FM+DFRKS+KEA+PDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKAL E+R
Sbjct: 121 FMDDFRKSYKEAHPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALEESR 180

Query: 181 NTENEDDEKDTEEVTEKEAEKVTDE 205
           N ENE+DEK+TEEV EKE E+VTDE
Sbjct: 181 NAENEEDEKETEEVAEKEVEEVTDE 205

[Close]

BLAST of Carg17766 vs. ExPASy Swiss-Prot
Match: Q8LDF9 (High mobility group B protein 7 OS=Arabidopsis thaliana OX=3702 GN=HMGB7 PE=1 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.0e-40
Identity = 113/199 (56.78%), Postives = 140/199 (70.35%), Query Frame = 0


Query: 10  RKRVDAAPSDAATTGPSLVRAKDGSAFARCGECGKSVPAALISMHSCSLDTKIRMNLEAQ 69
           RKRV+A  S  + T  +L RAKDGSAFA C  C KSV  ALISMH+CSLD KIR+NLEAQ
Sbjct: 14  RKRVEAETS--SNTSTTLRRAKDGSAFALCEGCNKSVAVALISMHNCSLDAKIRVNLEAQ 73

Query: 70  TVEKQTQA-KKPAERKRSAPSEPKATK-SKTDKRKKKDKDPNAPKRPPTAFFIFMEDFRK 129
            VE Q +A KKPAE+K++    PK  +  KT+  KK     N PKRP TAFFIFM DFRK
Sbjct: 74  VVETQAEAKKKPAEKKKTTSDGPKPKRLKKTNDEKKSSSTSNKPKRPLTAFFIFMSDFRK 133

Query: 130 SFKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALETRNT--ENED 189
           +FK  +  S   K+ AK GGEKWKS+T+EEKK Y DKAAELKAEY K+LE+ +   E ED
Sbjct: 134 TFKSEHNGSL-AKDAAKIGGEKWKSLTEEEKKVYLDKAAELKAEYNKSLESNDADEEEED 193

Query: 190 DEKDTEEVTEKEAEKVTDE 205
           +EK +++V + E ++V D+
Sbjct: 194 EEKQSDDVDDAEEKQVDDD 209

[Close]

BLAST of Carg17766 vs. ExPASy Swiss-Prot
Match: O49595 (High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.3e-19
Identity = 66/138 (47.83%), Postives = 89/138 (64.49%), Query Frame = 0


Query: 71  VEKQTQAKKPAE----RKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTAFFIFMEDFR 130
           V+   +A KP +     KR AP+E K TK +T K KK  KDPN PKR P+AFF+F+EDFR
Sbjct: 10  VKTTKEALKPVDDRKVGKRKAPAE-KPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFR 69

Query: 131 KSFKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALETRNTENEDD 190
            +FK+ NP+ K V  V K GG+KWKSM+  EK PY++KAA+ KAEYEK ++  N   E+ 
Sbjct: 70  VTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEG 129

Query: 191 EKDTEEVTEKEAEKVTDE 205
             +    +EK   ++ DE
Sbjct: 130 SDE----SEKSRSEINDE 142

[Close]

BLAST of Carg17766 vs. ExPASy Swiss-Prot
Match: P40619 (HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-15
Identity = 58/128 (45.31%), Postives = 77/128 (60.16%), Query Frame = 0


Query: 84  KRSAPSEPKATKSK----TDKRKKKDKDPNAPKRPPTAFFIFMEDFRKSFKEANPDSKGV 143
           K  A S+ K    K    T K KK  KDPN PKRPP+AFF+FMEDFRK++KE +P++K V
Sbjct: 5   KSKAKSDNKLAVKKQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSV 64

Query: 144 KEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALETRN-------TENEDDEKDTEE 201
             V K GG+KWK +T  EK P+  KA + K EYEK L+  N        E E+ +K   E
Sbjct: 65  AVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAGAAEEEESDKSRSE 124

[Close]

BLAST of Carg17766 vs. ExPASy Swiss-Prot
Match: O49596 (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.8e-15
Identity = 58/128 (45.31%), Postives = 78/128 (60.94%), Query Frame = 0


Query: 77  AKKPAERKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTAFFIFMEDFRKSFKEANPDS 136
           AK   E + S  S  K       + K   KDPN PKRP +AFF+FMEDFR++FK+ NP +
Sbjct: 4   AKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKN 63

Query: 137 KGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALETRNTENEDDEKDTEEVTEK 196
           K V  V K  G+KWKS++D EK PY  KA + K EYEK ++  N + E+  K+ EE ++K
Sbjct: 64  KSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPKEDEE-SDK 123

Query: 197 EAEKVTDE 205
              +V DE
Sbjct: 124 SVSEVNDE 130

[Close]

BLAST of Carg17766 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.8e-15
Identity = 60/128 (46.88%), Postives = 79/128 (61.72%), Query Frame = 0


Query: 77  AKKPAERKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTAFFIFMEDFRKSFKEANPDS 136
           AK  AE + +  S    TK      K   KDPN PKRP +AFF+FMEDFR ++KE +P +
Sbjct: 4   AKSKAETRSTKLS---VTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKN 63

Query: 137 KGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALETRNTENEDDEKDTEEVTEK 196
           K V  V K GGEKWKS++D EK PY  KA + K EYEK ++  N + E+  K+ EE ++K
Sbjct: 64  KSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKEDEE-SDK 123

Query: 197 EAEKVTDE 205
              +V DE
Sbjct: 124 SVSEVNDE 127

[Close]

BLAST of Carg17766 vs. ExPASy TrEMBL
Match: A0A6J1GYR9 (high mobility group B protein 7-like OS=Cucurbita moschata OX=3662 GN=LOC111458705 PE=4 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 2.2e-98
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MAVRRSSSSRKRVDAAPSDAATTGPSLVRAKDGSAFARCGECGKSVPAALISMHSCSLDT 60
           MAVRRSSSSRKRVDAAPSDAATTGPSLVRAKDGSAFARCGECGKSVPAALISMHSCSLDT
Sbjct: 1   MAVRRSSSSRKRVDAAPSDAATTGPSLVRAKDGSAFARCGECGKSVPAALISMHSCSLDT 60

Query: 61  KIRMNLEAQTVEKQTQAKKPAERKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTAFFI 120
           KIRMNLEAQTVEKQTQAKKPAERKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTAFFI
Sbjct: 61  KIRMNLEAQTVEKQTQAKKPAERKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTAFFI 120

Query: 121 FMEDFRKSFKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALETRN 180
           FMEDFRKSFKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALETRN
Sbjct: 121 FMEDFRKSFKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALETRN 180

Query: 181 TENEDDEKDTEEVTEKEAEKVTDE 205
           TENEDDEKDTEEVTEKEAEKVTDE
Sbjct: 181 TENEDDEKDTEEVTEKEAEKVTDE 204

[Close]

BLAST of Carg17766 vs. ExPASy TrEMBL
Match: A0A6J1JNZ6 (high mobility group B protein 7-like OS=Cucurbita maxima OX=3661 GN=LOC111487589 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 2.1e-93
Identity = 194/204 (95.10%), Postives = 201/204 (98.53%), Query Frame = 0


Query: 1   MAVRRSSSSRKRVDAAPSDAATTGPSLVRAKDGSAFARCGECGKSVPAALISMHSCSLDT 60
           MAVRRSSSSRKRVDAAPSDAATTGPSLVRAKDGSAFARC ECGKSVPAALISMHSCSLDT
Sbjct: 43  MAVRRSSSSRKRVDAAPSDAATTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLDT 102

Query: 61  KIRMNLEAQTVEKQTQAKKPAERKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTAFFI 120
           KIRMNLEAQTVEKQTQAKKPAERKRSAPSEPKATKSKTDKRKKK+KDPNAPKRPPTAFFI
Sbjct: 103 KIRMNLEAQTVEKQTQAKKPAERKRSAPSEPKATKSKTDKRKKKNKDPNAPKRPPTAFFI 162

Query: 121 FMEDFRKSFKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALETRN 180
           FM+D+RKSFKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEY+KALET+N
Sbjct: 163 FMDDYRKSFKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYKKALETQN 222

Query: 181 TENEDDEKDTEEVTEKEAEKVTDE 205
            ENEDDEKDTEEV E+EAE+VTDE
Sbjct: 223 AENEDDEKDTEEVAEREAEEVTDE 246

[Close]

BLAST of Carg17766 vs. ExPASy TrEMBL
Match: A0A6J1FJR0 (high mobility group B protein 7-like OS=Cucurbita moschata OX=3662 GN=LOC111444667 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 8.3e-82
Identity = 176/205 (85.85%), Postives = 190/205 (92.68%), Query Frame = 0


Query: 1   MAVRRSSSSRKRVDAAPSDAATTGPSLVRAKDGSAFARCGECGKSVPAALISMHSCSLDT 60
           MA   SS SRKRV+A P+ AA+TGPSLVRAKDGSAFARC ECGKSVPAALISMHSCSLD 
Sbjct: 1   MAGGGSSKSRKRVEATPAAAASTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLDA 60

Query: 61  KIRMNLEAQTVEKQTQAKKPAERKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTAFFI 120
           KIR NLEAQTVEKQTQAKKPAE+KRSAPSEPKA KS+T+KR KKDKDPNAPKRPPTAFF+
Sbjct: 61  KIRTNLEAQTVEKQTQAKKPAEKKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFFV 120

Query: 121 FMEDFRKSFKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKAL-ETR 180
           FM+DFRKS+KEA+PDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKAL E+R
Sbjct: 121 FMDDFRKSYKEAHPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALEESR 180

Query: 181 NTENEDDEKDTEEVTEKEAEKVTDE 205
           N ENE+DEK+TEEV EKE E+VTDE
Sbjct: 181 NAENEEDEKETEEVAEKEVEEVTDE 205

[Close]

BLAST of Carg17766 vs. ExPASy TrEMBL
Match: A0A6J1JX92 (high mobility group B protein 7-like OS=Cucurbita maxima OX=3661 GN=LOC111489146 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 3.1e-81
Identity = 175/205 (85.37%), Postives = 189/205 (92.20%), Query Frame = 0


Query: 1   MAVRRSSSSRKRVDAAPSDAATTGPSLVRAKDGSAFARCGECGKSVPAALISMHSCSLDT 60
           MA   SS SRKRV+A P+ AA TGPSLVRAKDGSAFARC ECGKSVPAALISMHSCSLD 
Sbjct: 1   MAGGGSSKSRKRVEATPAAAAPTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLDA 60

Query: 61  KIRMNLEAQTVEKQTQAKKPAERKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTAFFI 120
           KIR NLEAQTV+KQTQAKKPAE+KRSAPSEPKA KS+T+KR KKDKDPNAPKRPPTAFF+
Sbjct: 61  KIRTNLEAQTVDKQTQAKKPAEKKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFFV 120

Query: 121 FMEDFRKSFKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKAL-ETR 180
           FM+DFRKS+KEA+PDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKAL E+R
Sbjct: 121 FMDDFRKSYKEAHPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALEESR 180

Query: 181 NTENEDDEKDTEEVTEKEAEKVTDE 205
           N ENE+DEK+TEEV EKE E+VTDE
Sbjct: 181 NAENEEDEKETEEVAEKEVEEVTDE 205

[Close]

BLAST of Carg17766 vs. ExPASy TrEMBL
Match: A0A6J1CKD5 (high mobility group B protein 7 OS=Momordica charantia OX=3673 GN=LOC111011800 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.4e-75
Identity = 165/205 (80.49%), Postives = 180/205 (87.80%), Query Frame = 0


Query: 1   MAVRRSSSSRKRVDAAPSDAA-TTGPSLVRAKDGSAFARCGECGKSVPAALISMHSCSLD 60
           MA   SS SRKRV+A P+DAA  TGPSLVRAKDGSAFARC ECGKSVP ALISMHSCSLD
Sbjct: 19  MAGGGSSKSRKRVEATPADAAVATGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLD 78

Query: 61  TKIRMNLEAQTVEKQTQAKKPAERKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTAFF 120
            KIRMNLE+QTVEKQTQAKK +ERKRSA SEPKA KSK +KR KKD+DPNAPKRPPTAFF
Sbjct: 79  AKIRMNLESQTVEKQTQAKKSSERKRSASSEPKAKKSKVEKRGKKDRDPNAPKRPPTAFF 138

Query: 121 IFMEDFRKSFKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALETR 180
           IFM+DFRKS+KE +PDSKG KEVAKEGGEKWKS+TDEEKKPYQDKAAELK+EYEKALE  
Sbjct: 139 IFMDDFRKSYKEDHPDSKGGKEVAKEGGEKWKSLTDEEKKPYQDKAAELKSEYEKALENL 198

Query: 181 NTENEDDEKDTEEVTEKEAEKVTDE 205
             ENEDDEK+ EE  EKE E+++DE
Sbjct: 199 KNENEDDEKEAEEAAEKEVEEISDE 223

[Close]

BLAST of Carg17766 vs. TAIR 10
Match: AT5G23420.1 (high-mobility group box 6 )

HSP 1 Score: 167.2 bits (422), Expect = 1.4e-41
Identity = 113/199 (56.78%), Postives = 140/199 (70.35%), Query Frame = 0


Query: 10  RKRVDAAPSDAATTGPSLVRAKDGSAFARCGECGKSVPAALISMHSCSLDTKIRMNLEAQ 69
           RKRV+A  S  + T  +L RAKDGSAFA C  C KSV  ALISMH+CSLD KIR+NLEAQ
Sbjct: 14  RKRVEAETS--SNTSTTLRRAKDGSAFALCEGCNKSVAVALISMHNCSLDAKIRVNLEAQ 73

Query: 70  TVEKQTQA-KKPAERKRSAPSEPKATK-SKTDKRKKKDKDPNAPKRPPTAFFIFMEDFRK 129
            VE Q +A KKPAE+K++    PK  +  KT+  KK     N PKRP TAFFIFM DFRK
Sbjct: 74  VVETQAEAKKKPAEKKKTTSDGPKPKRLKKTNDEKKSSSTSNKPKRPLTAFFIFMSDFRK 133

Query: 130 SFKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALETRNT--ENED 189
           +FK  +  S   K+ AK GGEKWKS+T+EEKK Y DKAAELKAEY K+LE+ +   E ED
Sbjct: 134 TFKSEHNGSL-AKDAAKIGGEKWKSLTEEEKKVYLDKAAELKAEYNKSLESNDADEEEED 193

Query: 190 DEKDTEEVTEKEAEKVTDE 205
           +EK +++V + E ++V D+
Sbjct: 194 EEKQSDDVDDAEEKQVDDD 209

[Close]

BLAST of Carg17766 vs. TAIR 10
Match: AT3G51880.1 (high mobility group B1 )

HSP 1 Score: 96.7 bits (239), Expect = 2.3e-20
Identity = 66/138 (47.83%), Postives = 89/138 (64.49%), Query Frame = 0


Query: 71  VEKQTQAKKPAE----RKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTAFFIFMEDFR 130
           V+   +A KP +     KR AP+E K TK +T K KK  KDPN PKR P+AFF+F+EDFR
Sbjct: 10  VKTTKEALKPVDDRKVGKRKAPAE-KPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFR 69

Query: 131 KSFKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALETRNTENEDD 190
            +FK+ NP+ K V  V K GG+KWKSM+  EK PY++KAA+ KAEYEK ++  N   E+ 
Sbjct: 70  VTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEG 129

Query: 191 EKDTEEVTEKEAEKVTDE 205
             +    +EK   ++ DE
Sbjct: 130 SDE----SEKSRSEINDE 142

[Close]

BLAST of Carg17766 vs. TAIR 10
Match: AT3G51880.2 (high mobility group B1 )

HSP 1 Score: 96.7 bits (239), Expect = 2.3e-20
Identity = 66/138 (47.83%), Postives = 89/138 (64.49%), Query Frame = 0


Query: 71  VEKQTQAKKPAE----RKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTAFFIFMEDFR 130
           V+   +A KP +     KR AP+E K TK +T K KK  KDPN PKR P+AFF+F+EDFR
Sbjct: 10  VKTTKEALKPVDDRKVGKRKAPAE-KPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFR 69

Query: 131 KSFKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALETRNTENEDD 190
            +FK+ NP+ K V  V K GG+KWKSM+  EK PY++KAA+ KAEYEK ++  N   E+ 
Sbjct: 70  VTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEG 129

Query: 191 EKDTEEVTEKEAEKVTDE 205
             +    +EK   ++ DE
Sbjct: 130 SDE----SEKSRSEINDE 142

[Close]

BLAST of Carg17766 vs. TAIR 10
Match: AT3G51880.3 (high mobility group B1 )

HSP 1 Score: 96.7 bits (239), Expect = 2.3e-20
Identity = 66/138 (47.83%), Postives = 89/138 (64.49%), Query Frame = 0


Query: 71  VEKQTQAKKPAE----RKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTAFFIFMEDFR 130
           V+   +A KP +     KR AP+E K TK +T K KK  KDPN PKR P+AFF+F+EDFR
Sbjct: 10  VKTTKEALKPVDDRKVGKRKAPAE-KPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFR 69

Query: 131 KSFKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALETRNTENEDD 190
            +FK+ NP+ K V  V K GG+KWKSM+  EK PY++KAA+ KAEYEK ++  N   E+ 
Sbjct: 70  VTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEG 129

Query: 191 EKDTEEVTEKEAEKVTDE 205
             +    +EK   ++ DE
Sbjct: 130 SDE----SEKSRSEINDE 142

[Close]

BLAST of Carg17766 vs. TAIR 10
Match: AT3G51880.4 (high mobility group B1 )

HSP 1 Score: 96.7 bits (239), Expect = 2.3e-20
Identity = 66/138 (47.83%), Postives = 89/138 (64.49%), Query Frame = 0


Query: 71  VEKQTQAKKPAE----RKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTAFFIFMEDFR 130
           V+   +A KP +     KR AP+E K TK +T K KK  KDPN PKR P+AFF+F+EDFR
Sbjct: 10  VKTTKEALKPVDDRKVGKRKAPAE-KPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFR 69

Query: 131 KSFKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALETRNTENEDD 190
            +FK+ NP+ K V  V K GG+KWKSM+  EK PY++KAA+ KAEYEK ++  N   E+ 
Sbjct: 70  VTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEG 129

Query: 191 EKDTEEVTEKEAEKVTDE 205
             +    +EK   ++ DE
Sbjct: 130 SDE----SEKSRSEINDE 142

The following BLAST results are available for this feature:

BLAST of Carg17766 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022957271.1	4.5e-98	100.00	high mobility group B protein 7-like [Cucurbita moschata] >XP_022957277.1 high m...	[more]
KAG6601973.1	1.7e-97	99.51	High mobility group B protein 7, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023529651.1	9.3e-96	97.55	high mobility group B protein 7-like [Cucurbita pepo subsp. pepo]	[more]
XP_022990806.1	4.3e-93	95.10	high mobility group B protein 7-like [Cucurbita maxima]	[more]
XP_023550365.1	5.9e-82	86.34	high mobility group B protein 7-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg17766 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LDF9	2.0e-40	56.78	High mobility group B protein 7 OS=Arabidopsis thaliana OX=3702 GN=HMGB7 PE=1 SV...	[more]
O49595	3.3e-19	47.83	High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV...	[more]
P40619	1.7e-15	45.31	HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1	[more]
O49596	3.8e-15	45.31	High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV...	[more]
P93047	3.8e-15	46.88	High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV...	[more]

BLAST of Carg17766 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GYR9	2.2e-98	100.00	high mobility group B protein 7-like OS=Cucurbita moschata OX=3662 GN=LOC1114587...	[more]
A0A6J1JNZ6	2.1e-93	95.10	high mobility group B protein 7-like OS=Cucurbita maxima OX=3661 GN=LOC111487589...	[more]
A0A6J1FJR0	8.3e-82	85.85	high mobility group B protein 7-like OS=Cucurbita moschata OX=3662 GN=LOC1114446...	[more]
A0A6J1JX92	3.1e-81	85.37	high mobility group B protein 7-like OS=Cucurbita maxima OX=3661 GN=LOC111489146...	[more]
A0A6J1CKD5	3.4e-75	80.49	high mobility group B protein 7 OS=Momordica charantia OX=3673 GN=LOC111011800 P...	[more]

BLAST of Carg17766 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23420.1	1.4e-41	56.78	high-mobility group box 6	[more]
AT3G51880.1	2.3e-20	47.83	high mobility group B1	[more]
AT3G51880.2	2.3e-20	47.83	high mobility group B1	[more]
AT3G51880.3	2.3e-20	47.83	high mobility group B1	[more]
AT3G51880.4	2.3e-20	47.83	high mobility group B1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 165..185
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..204
None	No IPR available	PANTHER	PTHR47658:SF1	HIGH MOBILITY GROUP B PROTEIN 12-RELATED	coord: 7..200
None	No IPR available	PANTHER	PTHR47658	HIGH MOBILITY GROUP B PROTEIN 12-RELATED	coord: 7..200
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 111..177 e-value: 1.67538E-22 score: 84.2165
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 110..181 e-value: 1.3E-24 score: 97.8
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 111..177 e-value: 2.6E-22 score: 79.0
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 111..180 score: 19.496021
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 94..196 e-value: 2.1E-27 score: 97.3
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 99..177

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17766-RA	Carg17766-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding