Carg17760 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg17760
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	ATP-dependent DNA helicase At3g02060, chloroplastic
Location	Carg_Chr04: 17498390 .. 17500874 (+)
RNA-Seq Expression	Carg17760
Synteny	Carg17760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCACAAAGCTTTCTTCCAGTCCTTCAATGGTGGAATTTCCATCTCCATTATCTTCTTCACTCGATTTTCCACCACCTGCATAACAGTACCTCAATTCTCGTCTTTAATTGTCTCTTAGGTTATTCCTTTAATGGCTCTACTTTTACCCACAGCAGACGTTTCTTCCTCCAGACCGCTAGTCGCCTTCAGACTTGGCTCATTTCCCAAGCTATGGGGTCTCTTCAACCGCAACTGTAATTTACGGCATTTTTCCAAGCGATGTGTGTCGATAACTAATGTCGTCTATGCTGAAGATGTTATGGTTCCTGGTGCGGCTAAATCGGCGAGGCGGAGAGAGCAAATTGAGCTCGAGCATGACTCTATTACGGTTCTCAATGAGAGAATTCGGCGGTTTCATGTAAAGAGGGAGTCTTCGAAAACGGCTATGGATGCCGAGGAGGCGGACCGGTATATTCAGATGGTGAAGGAGCAGCAGCAAAGGGGCTTACAGAAGTTGAAGGGGAATAGGCAAAAGAAAGAGAGCGATGGTTATGATTATAAGGTTGATCCTTATACGCTTCGTTCTGGGGATTACGTTGTGCATAAGAAGGTCGGTATTGGCCGGTTCGTTGGAATTAAATTTGATGTTCAGAAGGGTTCTACGGAGCCTACTGAGTATGTGTTCATTGAGTATGCCGATGGGATGGCGAAGCTTTCTGTTAAGCAGGCGTCTCGGATGCTATATCGCTATAGTCTGTACGTTTGTCCATTCATTTACCCGCTTATGCATTCTGTTCACGGTGAACTTTCGTAGAATTATTCGTTACATTCATTGAATTGTTCAATGTTGGCCGTCATTTGGTGGCACATGCTAATTCATAATAGCAGACAAGAATGAGTTTAAACTCAAGAATATATTGTGAATGAATTGCCCTTAAAAGGGGTAAGAAAATTATTCTGAGCAGTCGTTTGGAACTATGGTAACTAGTCTACCTGGAGTTGAGGTTATACGAACAAATTCATTACTTGCTTTGTTATGTTTCTATTTACATATCCATGTTTCATTTATTTCATACTTTATTACATTTTCAGACCAAATGAAAACAAAAGGCCTCGTACATTGAGCAAATTAAATGACACTACCACATGGGAAAAGAGAAAGACCAAGGGAAAGATTGCAATTCAGAAGATGGTTGTTGATTTGATGGAACTGTATCTTCATAGGTTGAAACAGAGAAGGCCTCCCTACCCAAAGTGTTCGGCTATGGAGGAATTTGCTGCTCAGTTTTCTTACACGCCTACAGTGGACCAAAAGGAGGTACTTTCACTCAAAGGCTTCTGCCCTTTCATTCCTTGGATAGGGAGGGTAGAGGTTTCTTGGAATTTATTCAACTCCCATAAGGGAGCCTAACGAATCCAAAGTTTCATGTATGGTTTCGAATTGAAATTTTACATATGTATATTTACGTTCCCATCAGCCTCAATTGACATTTTTCCTTGAACTATAAGTTTTATTTCAGTTGAATAAAAAGTTTAAGTTTCAATAATGTTATCAAACTTATCCATTATTTTGAGCAAGTTCTTAATCTTAGAGTTGTTTTGAGGAAGGATTGGTACCATGACATTGTACATTAGGATACCTAGACATTTAACATGGAATTGTAGGAATTTATTTAAAACAGTGTAACCGGTCAAAATTCGTTATCACTACATCAGTATTATCTTTCTTTGAACACAACAATCAAATATTATTTACCACATCGTCTTACCATTTATTTTGGGAGGAATGACTAGGGATTCTTTGAAAACAATCAGTCAGTTATAGGGACGAAACTAAAAACTAGCCTAGATTTTAGAGATGGAATCAATATTTTCGTCTTTCCCATTTGTTTGACTTCTTGAAGTCGTTCCAGATGTCTAAATGTGGGTCTGTATCGATTGCTTATGTTTTACTGTTTGTACCAGTGCATACTAAATCATCTTCTATTCATTAGAACATGATATACTTTTGCTGCTCTAGTTCATTTATATCTGCAATGGCAAGCATAATAAGTTTCGTTAGTATGCGTTTGTATATTTATAACTCTACCAATTCATCTTTATATTAGCCATTAGATGTTTCCAAATTATTGTTATATTACTTTAAAGACCTAGATCCCTACTTGTGTTTTTCGAAGTTTCAGTGGATATGCATATTCTACTCTCTTCTTCTTGTAACATATCTTTTATTTATGCAGGCTTTCAGAGATGTTGAGAAAGATTTGACAGAGAGGGAAACTCCGATGGATCGTTTAATTTGTGGGGATGTTGGCTTCGGTAAAACTGAGGTTGCACTGCGTGCAATCTTCTATGTAGTCTCAGCAGGAAAGCAAGCTATGGTTCTAGCACCAACGATAGTCCTTGCCAAACAGCATTTTGAAGTTATCACACACAGATTTTCTTCATTTCCTGATGTCCAGATTGGATTATTGAGCAGGTTTCAGGTACAGTTAGATAAGCCTTAA

mRNA sequence

ATTCACAAAGCTTTCTTCCAGTCCTTCAATGGTGGAATTTCCATCTCCATTATCTTCTTCACTCGATTTTCCACCACCTGCATAACAGTACCTCAATTCTCGTCTTTAATTGTCTCTTAGGTTATTCCTTTAATGGCTCTACTTTTACCCACAGCAGACGTTTCTTCCTCCAGACCGCTAGTCGCCTTCAGACTTGGCTCATTTCCCAAGCTATGGGGTCTCTTCAACCGCAACTGTAATTTACGGCATTTTTCCAAGCGATGTGTGTCGATAACTAATGTCGTCTATGCTGAAGATGTTATGGTTCCTGGTGCGGCTAAATCGGCGAGGCGGAGAGAGCAAATTGAGCTCGAGCATGACTCTATTACGGTTCTCAATGAGAGAATTCGGCGGTTTCATGTAAAGAGGGAGTCTTCGAAAACGGCTATGGATGCCGAGGAGGCGGACCGGTATATTCAGATGGTGAAGGAGCAGCAGCAAAGGGGCTTACAGAAGTTGAAGGGGAATAGGCAAAAGAAAGAGAGCGATGGTTATGATTATAAGGTTGATCCTTATACGCTTCGTTCTGGGGATTACGTTGTGCATAAGAAGGTCGGTATTGGCCGGTTCGTTGGAATTAAATTTGATGTTCAGAAGGGTTCTACGGAGCCTACTGAGTATGTGTTCATTGAGTATGCCGATGGGATGGCGAAGCTTTCTGTTAAGCAGGCGTCTCGGATGCTATATCGCTATAGTCTACCAAATGAAAACAAAAGGCCTCGTACATTGAGCAAATTAAATGACACTACCACATGGGAAAAGAGAAAGACCAAGGGAAAGATTGCAATTCAGAAGATGGTTGTTGATTTGATGGAACTGTATCTTCATAGGTTGAAACAGAGAAGGCCTCCCTACCCAAAGTGTTCGGCTATGGAGGAATTTGCTGCTCAGTTTTCTTACACGCCTACAGTGGACCAAAAGGAGGCTTTCAGAGATGTTGAGAAAGATTTGACAGAGAGGGAAACTCCGATGGATCGTTTAATTTGTGGGGATGTTGGCTTCGGTAAAACTGAGGTTGCACTGCGTGCAATCTTCTATGTAGTCTCAGCAGGAAAGCAAGCTATGGTTCTAGCACCAACGATAGTCCTTGCCAAACAGCATTTTGAAGTTATCACACACAGATTTTCTTCATTTCCTGATGTCCAGATTGGATTATTGAGCAGGTTTCAGGTACAGTTAGATAAGCCTTAA

Coding sequence (CDS)

ATGGCTCTACTTTTACCCACAGCAGACGTTTCTTCCTCCAGACCGCTAGTCGCCTTCAGACTTGGCTCATTTCCCAAGCTATGGGGTCTCTTCAACCGCAACTGTAATTTACGGCATTTTTCCAAGCGATGTGTGTCGATAACTAATGTCGTCTATGCTGAAGATGTTATGGTTCCTGGTGCGGCTAAATCGGCGAGGCGGAGAGAGCAAATTGAGCTCGAGCATGACTCTATTACGGTTCTCAATGAGAGAATTCGGCGGTTTCATGTAAAGAGGGAGTCTTCGAAAACGGCTATGGATGCCGAGGAGGCGGACCGGTATATTCAGATGGTGAAGGAGCAGCAGCAAAGGGGCTTACAGAAGTTGAAGGGGAATAGGCAAAAGAAAGAGAGCGATGGTTATGATTATAAGGTTGATCCTTATACGCTTCGTTCTGGGGATTACGTTGTGCATAAGAAGGTCGGTATTGGCCGGTTCGTTGGAATTAAATTTGATGTTCAGAAGGGTTCTACGGAGCCTACTGAGTATGTGTTCATTGAGTATGCCGATGGGATGGCGAAGCTTTCTGTTAAGCAGGCGTCTCGGATGCTATATCGCTATAGTCTACCAAATGAAAACAAAAGGCCTCGTACATTGAGCAAATTAAATGACACTACCACATGGGAAAAGAGAAAGACCAAGGGAAAGATTGCAATTCAGAAGATGGTTGTTGATTTGATGGAACTGTATCTTCATAGGTTGAAACAGAGAAGGCCTCCCTACCCAAAGTGTTCGGCTATGGAGGAATTTGCTGCTCAGTTTTCTTACACGCCTACAGTGGACCAAAAGGAGGCTTTCAGAGATGTTGAGAAAGATTTGACAGAGAGGGAAACTCCGATGGATCGTTTAATTTGTGGGGATGTTGGCTTCGGTAAAACTGAGGTTGCACTGCGTGCAATCTTCTATGTAGTCTCAGCAGGAAAGCAAGCTATGGTTCTAGCACCAACGATAGTCCTTGCCAAACAGCATTTTGAAGTTATCACACACAGATTTTCTTCATTTCCTGATGTCCAGATTGGATTATTGAGCAGGTTTCAGGTACAGTTAGATAAGCCTTAA

Protein sequence

MALLLPTADVSSSRPLVAFRLGSFPKLWGLFNRNCNLRHFSKRCVSITNVVYAEDVMVPGAAKSARRREQIELEHDSITVLNERIRRFHVKRESSKTAMDAEEADRYIQMVKEQQQRGLQKLKGNRQKKESDGYDYKVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGSTEPTEYVFIEYADGMAKLSVKQASRMLYRYSLPNENKRPRTLSKLNDTTTWEKRKTKGKIAIQKMVVDLMELYLHRLKQRRPPYPKCSAMEEFAAQFSYTPTVDQKEAFRDVEKDLTERETPMDRLICGDVGFGKTEVALRAIFYVVSAGKQAMVLAPTIVLAKQHFEVITHRFSSFPDVQIGLLSRFQVQLDKP

Homology

[Close]

BLAST of Carg17760 vs. NCBI nr
Match: KAG7032664.1 (ATP-dependent DNA helicase, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 718.4 bits (1853), Expect = 3.2e-203
Identity = 365/365 (100.00%), Postives = 365/365 (100.00%), Query Frame = 0


Query: 1   MALLLPTADVSSSRPLVAFRLGSFPKLWGLFNRNCNLRHFSKRCVSITNVVYAEDVMVPG 60
           MALLLPTADVSSSRPLVAFRLGSFPKLWGLFNRNCNLRHFSKRCVSITNVVYAEDVMVPG
Sbjct: 1   MALLLPTADVSSSRPLVAFRLGSFPKLWGLFNRNCNLRHFSKRCVSITNVVYAEDVMVPG 60

Query: 61  AAKSARRREQIELEHDSITVLNERIRRFHVKRESSKTAMDAEEADRYIQMVKEQQQRGLQ 120
           AAKSARRREQIELEHDSITVLNERIRRFHVKRESSKTAMDAEEADRYIQMVKEQQQRGLQ
Sbjct: 61  AAKSARRREQIELEHDSITVLNERIRRFHVKRESSKTAMDAEEADRYIQMVKEQQQRGLQ 120

Query: 121 KLKGNRQKKESDGYDYKVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGSTEPTEYVFIE 180
           KLKGNRQKKESDGYDYKVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGSTEPTEYVFIE
Sbjct: 121 KLKGNRQKKESDGYDYKVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGSTEPTEYVFIE 180

Query: 181 YADGMAKLSVKQASRMLYRYSLPNENKRPRTLSKLNDTTTWEKRKTKGKIAIQKMVVDLM 240
           YADGMAKLSVKQASRMLYRYSLPNENKRPRTLSKLNDTTTWEKRKTKGKIAIQKMVVDLM
Sbjct: 181 YADGMAKLSVKQASRMLYRYSLPNENKRPRTLSKLNDTTTWEKRKTKGKIAIQKMVVDLM 240

Query: 241 ELYLHRLKQRRPPYPKCSAMEEFAAQFSYTPTVDQKEAFRDVEKDLTERETPMDRLICGD 300
           ELYLHRLKQRRPPYPKCSAMEEFAAQFSYTPTVDQKEAFRDVEKDLTERETPMDRLICGD
Sbjct: 241 ELYLHRLKQRRPPYPKCSAMEEFAAQFSYTPTVDQKEAFRDVEKDLTERETPMDRLICGD 300

Query: 301 VGFGKTEVALRAIFYVVSAGKQAMVLAPTIVLAKQHFEVITHRFSSFPDVQIGLLSRFQV 360
           VGFGKTEVALRAIFYVVSAGKQAMVLAPTIVLAKQHFEVITHRFSSFPDVQIGLLSRFQV
Sbjct: 301 VGFGKTEVALRAIFYVVSAGKQAMVLAPTIVLAKQHFEVITHRFSSFPDVQIGLLSRFQV 360

Query: 361 QLDKP 366
           QLDKP
Sbjct: 361 QLDKP 365

[Close]

BLAST of Carg17760 vs. NCBI nr
Match: KAG6601968.1 (ATP-dependent DNA helicase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 708.8 bits (1828), Expect = 2.5e-200
Identity = 360/364 (98.90%), Postives = 362/364 (99.45%), Query Frame = 0


Query: 1   MALLLPTADVSSSRPLVAFRLGSFPKLWGLFNRNCNLRHFSKRCVSITNVVYAEDVMVPG 60
           MALLLPTADVSSSRPLVAFRLGSFPKLWGLFNRNCNLRHFSKRCVSITNVVYAEDVMVPG
Sbjct: 1   MALLLPTADVSSSRPLVAFRLGSFPKLWGLFNRNCNLRHFSKRCVSITNVVYAEDVMVPG 60

Query: 61  AAKSARRREQIELEHDSITVLNERIRRFHVKRESSKTAMDAEEADRYIQMVKEQQQRGLQ 120
           AAKSARRREQIELEHDSITVLNERIRRFHVKRESSKTAMDAEEADRYIQMVKEQQQRGLQ
Sbjct: 61  AAKSARRREQIELEHDSITVLNERIRRFHVKRESSKTAMDAEEADRYIQMVKEQQQRGLQ 120

Query: 121 KLKGNRQKKESDGYDYKVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGSTEPTEYVFIE 180
           KLKGNRQKKESDGYDYKVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGSTEPTEYVFIE
Sbjct: 121 KLKGNRQKKESDGYDYKVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGSTEPTEYVFIE 180

Query: 181 YADGMAKLSVKQASRMLYRYSLPNENKRPRTLSKLNDTTTWEKRKTKGKIAIQKMVVDLM 240
           YADGMAKLSVKQASRMLYRYSLPNENKRPRTLSKLNDTTTWEKRKTKGKIAIQKMVVDLM
Sbjct: 181 YADGMAKLSVKQASRMLYRYSLPNENKRPRTLSKLNDTTTWEKRKTKGKIAIQKMVVDLM 240

Query: 241 ELYLHRLKQRRPPYPKCSAMEEFAAQFSYTPTVDQKEAFRDVEKDLTERETPMDRLICGD 300
           ELYLHRLKQRRPPYPKCSAMEEFAAQFSYTPTVDQKEAFRDVEKDLTERETPMDRLICGD
Sbjct: 241 ELYLHRLKQRRPPYPKCSAMEEFAAQFSYTPTVDQKEAFRDVEKDLTERETPMDRLICGD 300

Query: 301 VGFGKTEVALRAIFYVVSAGKQAMVLAPTIVLAKQHFEVITHRFSSFPDVQIGLLSRFQV 360
           VGFGKTEVALRAIFYVVSAGKQAMVLAPTIVLAKQHFEVITHRFSSFPDVQIGLLSRFQ 
Sbjct: 301 VGFGKTEVALRAIFYVVSAGKQAMVLAPTIVLAKQHFEVITHRFSSFPDVQIGLLSRFQT 360

Query: 361 QLDK 365
           + +K
Sbjct: 361 KSEK 364

[Close]

BLAST of Carg17760 vs. NCBI nr
Match: XP_022957218.1 (ATP-dependent DNA helicase At3g02060, chloroplastic [Cucurbita moschata] >XP_022957227.1 ATP-dependent DNA helicase At3g02060, chloroplastic [Cucurbita moschata])

HSP 1 Score: 708.8 bits (1828), Expect = 2.5e-200
Identity = 360/364 (98.90%), Postives = 362/364 (99.45%), Query Frame = 0


Query: 1   MALLLPTADVSSSRPLVAFRLGSFPKLWGLFNRNCNLRHFSKRCVSITNVVYAEDVMVPG 60
           MALLLPTADVSSSRPLVAFRLGSFPKLWGLFNRNCNLRHFSKRCVSITNVVYAEDVMVPG
Sbjct: 1   MALLLPTADVSSSRPLVAFRLGSFPKLWGLFNRNCNLRHFSKRCVSITNVVYAEDVMVPG 60

Query: 61  AAKSARRREQIELEHDSITVLNERIRRFHVKRESSKTAMDAEEADRYIQMVKEQQQRGLQ 120
           AAKSARRREQIELEHDSITVLNERIRRFHVKRESSKTAMDAEEADRYIQMVKEQQQRGLQ
Sbjct: 61  AAKSARRREQIELEHDSITVLNERIRRFHVKRESSKTAMDAEEADRYIQMVKEQQQRGLQ 120

Query: 121 KLKGNRQKKESDGYDYKVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGSTEPTEYVFIE 180
           KLKGNRQKKESDGYDYKVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGSTEPTEYVFIE
Sbjct: 121 KLKGNRQKKESDGYDYKVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGSTEPTEYVFIE 180

Query: 181 YADGMAKLSVKQASRMLYRYSLPNENKRPRTLSKLNDTTTWEKRKTKGKIAIQKMVVDLM 240
           YADGMAKLSVKQASRMLYRYSLPNENKRPRTLSKLNDTTTWEKRKTKGKIAIQKMVVDLM
Sbjct: 181 YADGMAKLSVKQASRMLYRYSLPNENKRPRTLSKLNDTTTWEKRKTKGKIAIQKMVVDLM 240

Query: 241 ELYLHRLKQRRPPYPKCSAMEEFAAQFSYTPTVDQKEAFRDVEKDLTERETPMDRLICGD 300
           ELYLHRLKQRRPPYPKCSAMEEFAAQFSYTPTVDQKEAFRDVEKDLTERETPMDRLICGD
Sbjct: 241 ELYLHRLKQRRPPYPKCSAMEEFAAQFSYTPTVDQKEAFRDVEKDLTERETPMDRLICGD 300

Query: 301 VGFGKTEVALRAIFYVVSAGKQAMVLAPTIVLAKQHFEVITHRFSSFPDVQIGLLSRFQV 360
           VGFGKTEVALRAIFYVVSAGKQAMVLAPTIVLAKQHFEVITHRFSSFPDVQIGLLSRFQ 
Sbjct: 301 VGFGKTEVALRAIFYVVSAGKQAMVLAPTIVLAKQHFEVITHRFSSFPDVQIGLLSRFQT 360

Query: 361 QLDK 365
           + +K
Sbjct: 361 KSEK 364

[Close]

BLAST of Carg17760 vs. NCBI nr
Match: XP_023529599.1 (ATP-dependent DNA helicase At3g02060, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 697.6 bits (1799), Expect = 5.8e-197
Identity = 356/364 (97.80%), Postives = 359/364 (98.63%), Query Frame = 0


Query: 1   MALLLPTADVSSSRPLVAFRLGSFPKLWGLFNRNCNLRHFSKRCVSITNVVYAEDVMVPG 60
           MALLLPTA VSSSRPLVAFRLGSFPKLWGLFNRNCNLRH SKRCVSITNVVYAEDVMVPG
Sbjct: 1   MALLLPTAVVSSSRPLVAFRLGSFPKLWGLFNRNCNLRHCSKRCVSITNVVYAEDVMVPG 60

Query: 61  AAKSARRREQIELEHDSITVLNERIRRFHVKRESSKTAMDAEEADRYIQMVKEQQQRGLQ 120
           AAKSARRREQIELEHDSITVLNERIRRFHVKRESSKTAM+AEEADRYIQMVKEQQQRGLQ
Sbjct: 61  AAKSARRREQIELEHDSITVLNERIRRFHVKRESSKTAMEAEEADRYIQMVKEQQQRGLQ 120

Query: 121 KLKGNRQKKESDGYDYKVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGSTEPTEYVFIE 180
           KLKGNRQKKESDGYDYKVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGSTEPTEYVFIE
Sbjct: 121 KLKGNRQKKESDGYDYKVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGSTEPTEYVFIE 180

Query: 181 YADGMAKLSVKQASRMLYRYSLPNENKRPRTLSKLNDTTTWEKRKTKGKIAIQKMVVDLM 240
           YADGMAKLSVKQASRMLYRYSLPNENKRPRTLSKLNDTTTWEKRKTKGKIAIQKMVVDLM
Sbjct: 181 YADGMAKLSVKQASRMLYRYSLPNENKRPRTLSKLNDTTTWEKRKTKGKIAIQKMVVDLM 240

Query: 241 ELYLHRLKQRRPPYPKCSAMEEFAAQFSYTPTVDQKEAFRDVEKDLTERETPMDRLICGD 300
           ELYLHRLKQRRPPYPKCSAMEEFAAQFSYTPTVDQKEAFRDVEKDLTERETPMDRLICGD
Sbjct: 241 ELYLHRLKQRRPPYPKCSAMEEFAAQFSYTPTVDQKEAFRDVEKDLTERETPMDRLICGD 300

Query: 301 VGFGKTEVALRAIFYVVSAGKQAMVLAPTIVLAKQHFEVITHRFSSFPDVQIGLLSRFQV 360
           VGFGKTEVALRAIFYVVSAGKQAMVLAPTIVLAKQHFEVIT RFSSFPDVQIGLLSRFQ 
Sbjct: 301 VGFGKTEVALRAIFYVVSAGKQAMVLAPTIVLAKQHFEVITQRFSSFPDVQIGLLSRFQT 360

Query: 361 QLDK 365
           + +K
Sbjct: 361 KSEK 364

[Close]

BLAST of Carg17760 vs. NCBI nr
Match: XP_022990814.1 (ATP-dependent DNA helicase At3g02060, chloroplastic [Cucurbita maxima] >XP_022990815.1 ATP-dependent DNA helicase At3g02060, chloroplastic [Cucurbita maxima])

HSP 1 Score: 686.4 bits (1770), Expect = 1.3e-193
Identity = 352/364 (96.70%), Postives = 355/364 (97.53%), Query Frame = 0


Query: 1   MALLLPTADVSSSRPLVAFRLGSFPKLWGLFNRNCNLRHFSKRCVSITNVVYAEDVMVPG 60
           MALLLPTADVSSSRPLVAFRLGSFPKLWGLFNRNCNLRH SKR VSITNVVYAEDVMV G
Sbjct: 1   MALLLPTADVSSSRPLVAFRLGSFPKLWGLFNRNCNLRHCSKRFVSITNVVYAEDVMVSG 60

Query: 61  AAKSARRREQIELEHDSITVLNERIRRFHVKRESSKTAMDAEEADRYIQMVKEQQQRGLQ 120
            AKSARRREQIELE DSITVLNERIRRFHVKRESSKTAMDA EADRYIQMVKEQQQRGLQ
Sbjct: 61  TAKSARRREQIELERDSITVLNERIRRFHVKRESSKTAMDAVEADRYIQMVKEQQQRGLQ 120

Query: 121 KLKGNRQKKESDGYDYKVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGSTEPTEYVFIE 180
           KLKGNR+KKESDGYDYKVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGSTEPTEYVFIE
Sbjct: 121 KLKGNRKKKESDGYDYKVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGSTEPTEYVFIE 180

Query: 181 YADGMAKLSVKQASRMLYRYSLPNENKRPRTLSKLNDTTTWEKRKTKGKIAIQKMVVDLM 240
           YADGMAKLSVKQASRMLYRYSLPNENKRPRTLSKLNDTTTWEKRKTKGKIAIQKMVVDLM
Sbjct: 181 YADGMAKLSVKQASRMLYRYSLPNENKRPRTLSKLNDTTTWEKRKTKGKIAIQKMVVDLM 240

Query: 241 ELYLHRLKQRRPPYPKCSAMEEFAAQFSYTPTVDQKEAFRDVEKDLTERETPMDRLICGD 300
           ELYLHRLKQRRPPYPKCSAMEEFAAQFSYTPTVDQKEAFRDVEKDLTERETPMDRLICGD
Sbjct: 241 ELYLHRLKQRRPPYPKCSAMEEFAAQFSYTPTVDQKEAFRDVEKDLTERETPMDRLICGD 300

Query: 301 VGFGKTEVALRAIFYVVSAGKQAMVLAPTIVLAKQHFEVITHRFSSFPDVQIGLLSRFQV 360
           VGFGKTEVALRAIFYVVSAGKQAMVLAPTIVLAKQHFEVIT RFSSFPDVQIGLLSRFQ 
Sbjct: 301 VGFGKTEVALRAIFYVVSAGKQAMVLAPTIVLAKQHFEVITQRFSSFPDVQIGLLSRFQT 360

Query: 361 QLDK 365
           + +K
Sbjct: 361 KSEK 364

[Close]

BLAST of Carg17760 vs. ExPASy Swiss-Prot
Match: F4JFJ3 (ATP-dependent DNA helicase At3g02060, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g02060 PE=2 SV=1)

HSP 1 Score: 449.5 bits (1155), Expect = 3.6e-125
Identity = 251/368 (68.21%), Postives = 294/368 (79.89%), Query Frame = 0


Query: 1   MALLLPTADVSSSRPLVAFRLGSFPKLWGLFNRNCNLRHFSKRCVSITNVVYAEDVMVPG 60
           M  LLP  D   + PLV  +L SFP    LF  +  LR F+++  S+  +V A   +   
Sbjct: 1   MMSLLPNPD-PITVPLV-LKLCSFPPPRRLF--SLRLRRFTRKSSSLLPLV-AVSSLSAT 60

Query: 61  AAKSARRREQIEL-EHDSITVLNERIRRFHVKRESSKTAMDAEEADRYIQMVKEQQQRGL 120
           AAK  R RE+ EL E DSI++LNERIRR   KRE+++ AMD+EEA++YI MVKEQQ+RGL
Sbjct: 61  AAKPTRWREKPELAESDSISLLNERIRRDLGKRETARPAMDSEEAEKYIHMVKEQQERGL 120

Query: 121 QKLKGNRQ--KKESDG-YDYKVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGSTEPTEY 180
           QKLKG RQ  K   DG + YKVDPY+L SGDYVVHKKVGIGRFVGIKFDV K S+EP EY
Sbjct: 121 QKLKGIRQGTKAAGDGAFSYKVDPYSLLSGDYVVHKKVGIGRFVGIKFDVPKDSSEPLEY 180

Query: 181 VFIEYADGMAKLSVKQASRMLYRYSLPNENKRPRTLSKLNDTTTWEKRKTKGKIAIQKMV 240
           VFIEYADGMAKL +KQASR+LYRY+LPNE KRPRTLS+L+DT+ WE+RKTKGK+AIQKMV
Sbjct: 181 VFIEYADGMAKLPLKQASRLLYRYNLPNETKRPRTLSRLSDTSVWERRKTKGKVAIQKMV 240

Query: 241 VDLMELYLHRLKQRRPPYPKCSAMEEFAAQFSYTPTVDQKEAFRDVEKDLTERETPMDRL 300
           VDLMELYLHRL+Q+R PYPK   M +FAAQF Y  T DQK+AF DVEKDLTERETPMDRL
Sbjct: 241 VDLMELYLHRLRQKRYPYPKNPIMADFAAQFPYNATPDQKQAFLDVEKDLTERETPMDRL 300

Query: 301 ICGDVGFGKTEVALRAIFYVVSAGKQAMVLAPTIVLAKQHFEVITHRFSSFPDVQIGLLS 360
           ICGDVGFGKTEVALRAIF VVS GKQAMVLAPTIVLAKQH++VI+ RFS +P +++GLLS
Sbjct: 301 ICGDVGFGKTEVALRAIFCVVSTGKQAMVLAPTIVLAKQHYDVISERFSLYPHIKVGLLS 360

Query: 361 RFQVQLDK 365
           RFQ + +K
Sbjct: 361 RFQTKAEK 363

[Close]

BLAST of Carg17760 vs. ExPASy Swiss-Prot
Match: Q55750 (Transcription-repair-coupling factor OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=mfd PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.1e-38
Identity = 104/233 (44.64%), Postives = 143/233 (61.37%), Query Frame = 0


Query: 137 KVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGSTEPTEYVFIEYADGMAKL---SVKQA 196
           +VD   L  GDYVVHK  GIG+F  +K D    +    EY+ I+YADG+ ++   S+   
Sbjct: 521 QVDINKLSPGDYVVHKSHGIGKF--LKLD----ALANREYLMIQYADGILRVPADSLDSL 580

Query: 197 SRMLYRYSLPNENKRPRTLSKLNDTTTWEKRKTKGKIAIQKMVVDLMELYLHRLKQRRPP 256
           SR  +R++      RP  L K+     WE  K K + A++K+ VDL+ LY  R KQ    
Sbjct: 581 SR--FRHT----GTRPPELHKMGG-KVWEATKNKVRKAVKKLAVDLLNLYAKRAKQVGYA 640

Query: 257 YPKCSA-MEEFAAQFSYTPTVDQKEAFRDVEKDLTERETPMDRLICGDVGFGKTEVALRA 316
           YP  S   +E    F Y PT DQ +A +DV++DL E + PMDRL+CGDVGFGKTEVA+RA
Sbjct: 641 YPPDSPWQQELEDSFPYQPTPDQLKAVQDVKRDL-EGDRPMDRLVCGDVGFGKTEVAVRA 700

Query: 317 IFYVVSAG-KQAMVLAPTIVLAKQHFEVITHRFSSFPDVQIGLLSRFQVQLDK 365
           IF  V++G KQ  +LAPT VL +QH+  +  RF+ +P + IGLL+RF+   +K
Sbjct: 701 IFKAVTSGNKQVALLAPTTVLTQQHYHTLKERFAPYP-ITIGLLNRFRTASEK 738

[Close]

BLAST of Carg17760 vs. ExPASy Swiss-Prot
Match: P37474 (Transcription-repair-coupling factor OS=Bacillus subtilis (strain 168) OX=224308 GN=mfd PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.6e-32
Identity = 89/220 (40.45%), Postives = 130/220 (59.09%), Query Frame = 0


Query: 143 LRSGDYVVHKKVGIGRFVGIKFDVQKGSTEPTEYVFIEYADGMAKLSVKQASRMLYRYSL 202
           L+ GDYVVH   GIG+++GI+     G  +  +Y+ I Y  G  KL V        +  +
Sbjct: 500 LQIGDYVVHINHGIGKYLGIETLEINGIHK--DYLNIHY-QGSDKLYVPVEQIDQVQKYV 559

Query: 203 PNENKRPRTLSKLNDTTTWEKRKTKGKIAIQKMVVDLMELYLHRLKQRRPPY-PKCSAME 262
            +E K P+ L KL   + W++ K K + ++Q +  DL++LY  R   +   + P      
Sbjct: 560 GSEGKEPK-LYKLGG-SEWKRVKKKVETSVQDIADDLIKLYAEREASKGYAFSPDHEMQR 619

Query: 263 EFAAQFSYTPTVDQKEAFRDVEKDLTERETPMDRLICGDVGFGKTEVALRAIFYVVSAGK 322
           EF + F Y  T DQ  +  +++KD+ ERE PMDRL+CGDVG+GKTEVA+RA F  +  GK
Sbjct: 620 EFESAFPYQETEDQLRSIHEIKKDM-ERERPMDRLLCGDVGYGKTEVAIRAAFKAIGDGK 679

Query: 323 QAMVLAPTIVLAKQHFEVITHRFSSFPDVQIGLLSRFQVQ 362
           Q  +L PT +LA+QH+E I  RF  +P + IGLLSRF+ +
Sbjct: 680 QVALLVPTTILAQQHYETIKERFQDYP-INIGLLSRFRTR 712

[Close]

BLAST of Carg17760 vs. ExPASy Swiss-Prot
Match: Q49V12 (Transcription-repair-coupling factor OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=mfd PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.7e-29
Identity = 91/258 (35.27%), Postives = 148/258 (57.36%), Query Frame = 0


Query: 107 YIQMV---KEQQQRGLQKLKGNRQKKESDGYDYKVDPY-TLRSGDYVVHKKVGIGRFVGI 166
           Y+Q+V   + +  +  QK K  + K  ++    K+  Y  L+ GDYVVH   G+GR++G+
Sbjct: 459 YMQLVVVTERELFKSKQKKKPKQHKTLTNA--EKIKSYQDLKVGDYVVHVHHGVGRYLGV 518

Query: 167 KFDVQKGSTEPTEYVFIEYADGMAKLSVKQASRMLYRYSLPNENKRPRTLSKLNDTTTWE 226
           +  ++ G     +Y+ ++Y  G  +L V        +  + +E+K P+ L+KL   T W+
Sbjct: 519 E-TLEVGGVH-KDYIKLQY-KGTDQLFVPVDQMDQVQKYVASEDKSPK-LNKLGG-TEWK 578

Query: 227 KRKTKGKIAIQKMVVDLMELYLHRLKQRRPPY-PKCSAMEEFAAQFSYTPTVDQKEAFRD 286
           K K K + +++ M  +L+ELY  R       + P  +   +F   F Y  T DQ ++  +
Sbjct: 579 KTKAKVQQSVEDMADELIELYKAREMSVGYKFGPDTAEQNDFEIDFPYELTPDQSKSIEE 638

Query: 287 VEKDLTERETPMDRLICGDVGFGKTEVALRAIFYVVSAGKQAMVLAPTIVLAKQHFEVIT 346
           +++D+ E E PMDRL+CGDVG+GKTEVA+RA F  V  GKQ   L PT +LA+QH+E + 
Sbjct: 639 IKQDM-EIERPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHYETLI 698

Query: 347 HRFSSFPDVQIGLLSRFQ 360
            R   FP +++ L+SRF+
Sbjct: 699 ERMQDFP-IEVQLISRFR 707

[Close]

BLAST of Carg17760 vs. ExPASy Swiss-Prot
Match: Q5HRQ2 (Transcription-repair-coupling factor OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) OX=176279 GN=mfd PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 4.8e-29
Identity = 94/257 (36.58%), Postives = 148/257 (57.59%), Query Frame = 0


Query: 107 YIQMVKEQQQRGLQKLKGNRQKKESDGYD--YKVDPY-TLRSGDYVVHKKVGIGRFVGIK 166
           Y+Q+V    +R L K +  +Q+K +       K+  Y  L  GDY+VH   G+GR++G++
Sbjct: 458 YMQLV-VITERELFKTRQKKQRKRTKTISNAEKIKSYQDLNVGDYIVHVHHGVGRYLGVE 517

Query: 167 FDVQKGSTEPTEYVFIEYADGMAKLSVKQASRMLYRYSLPNENKRPRTLSKLNDTTTWEK 226
             ++ G T   +Y+ ++Y  G  +L V        +  + +E+K PR L+KL   T W+K
Sbjct: 518 -TLEVGDTH-RDYIKLQY-KGTDQLFVPVDQMDQVQKYVASEDKSPR-LNKLGG-TEWKK 577

Query: 227 RKTKGKIAIQKMVVDLMELYLHRLKQRRPPYPKCSAMEE-FAAQFSYTPTVDQKEAFRDV 286
            K K + +++ +  +L++LY  R       Y + +A +  F   F Y  T DQ ++  ++
Sbjct: 578 TKAKVQQSVEDIADELIDLYKEREMSVGYQYGQDTAEQSAFEHDFPYELTPDQSKSIDEI 637

Query: 287 EKDLTERETPMDRLICGDVGFGKTEVALRAIFYVVSAGKQAMVLAPTIVLAKQHFEVITH 346
           + D+ ER  PMDRL+CGDVG+GKTEVA+RA F  V  GKQ   L PT +LA+QH+E +  
Sbjct: 638 KGDM-ERARPMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLE 697

Query: 347 RFSSFPDVQIGLLSRFQ 360
           R   FP V+I L+SRF+
Sbjct: 698 RMQDFP-VEIQLVSRFR 706

[Close]

BLAST of Carg17760 vs. ExPASy TrEMBL
Match: A0A6J1GZL7 (ATP-dependent DNA helicase At3g02060, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111458673 PE=4 SV=1)

HSP 1 Score: 708.8 bits (1828), Expect = 1.2e-200
Identity = 360/364 (98.90%), Postives = 362/364 (99.45%), Query Frame = 0


Query: 1   MALLLPTADVSSSRPLVAFRLGSFPKLWGLFNRNCNLRHFSKRCVSITNVVYAEDVMVPG 60
           MALLLPTADVSSSRPLVAFRLGSFPKLWGLFNRNCNLRHFSKRCVSITNVVYAEDVMVPG
Sbjct: 1   MALLLPTADVSSSRPLVAFRLGSFPKLWGLFNRNCNLRHFSKRCVSITNVVYAEDVMVPG 60

Query: 61  AAKSARRREQIELEHDSITVLNERIRRFHVKRESSKTAMDAEEADRYIQMVKEQQQRGLQ 120
           AAKSARRREQIELEHDSITVLNERIRRFHVKRESSKTAMDAEEADRYIQMVKEQQQRGLQ
Sbjct: 61  AAKSARRREQIELEHDSITVLNERIRRFHVKRESSKTAMDAEEADRYIQMVKEQQQRGLQ 120

Query: 121 KLKGNRQKKESDGYDYKVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGSTEPTEYVFIE 180
           KLKGNRQKKESDGYDYKVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGSTEPTEYVFIE
Sbjct: 121 KLKGNRQKKESDGYDYKVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGSTEPTEYVFIE 180

Query: 181 YADGMAKLSVKQASRMLYRYSLPNENKRPRTLSKLNDTTTWEKRKTKGKIAIQKMVVDLM 240
           YADGMAKLSVKQASRMLYRYSLPNENKRPRTLSKLNDTTTWEKRKTKGKIAIQKMVVDLM
Sbjct: 181 YADGMAKLSVKQASRMLYRYSLPNENKRPRTLSKLNDTTTWEKRKTKGKIAIQKMVVDLM 240

Query: 241 ELYLHRLKQRRPPYPKCSAMEEFAAQFSYTPTVDQKEAFRDVEKDLTERETPMDRLICGD 300
           ELYLHRLKQRRPPYPKCSAMEEFAAQFSYTPTVDQKEAFRDVEKDLTERETPMDRLICGD
Sbjct: 241 ELYLHRLKQRRPPYPKCSAMEEFAAQFSYTPTVDQKEAFRDVEKDLTERETPMDRLICGD 300

Query: 301 VGFGKTEVALRAIFYVVSAGKQAMVLAPTIVLAKQHFEVITHRFSSFPDVQIGLLSRFQV 360
           VGFGKTEVALRAIFYVVSAGKQAMVLAPTIVLAKQHFEVITHRFSSFPDVQIGLLSRFQ 
Sbjct: 301 VGFGKTEVALRAIFYVVSAGKQAMVLAPTIVLAKQHFEVITHRFSSFPDVQIGLLSRFQT 360

Query: 361 QLDK 365
           + +K
Sbjct: 361 KSEK 364

[Close]

BLAST of Carg17760 vs. ExPASy TrEMBL
Match: A0A6J1JT22 (ATP-dependent DNA helicase At3g02060, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487597 PE=4 SV=1)

HSP 1 Score: 686.4 bits (1770), Expect = 6.4e-194
Identity = 352/364 (96.70%), Postives = 355/364 (97.53%), Query Frame = 0


Query: 1   MALLLPTADVSSSRPLVAFRLGSFPKLWGLFNRNCNLRHFSKRCVSITNVVYAEDVMVPG 60
           MALLLPTADVSSSRPLVAFRLGSFPKLWGLFNRNCNLRH SKR VSITNVVYAEDVMV G
Sbjct: 1   MALLLPTADVSSSRPLVAFRLGSFPKLWGLFNRNCNLRHCSKRFVSITNVVYAEDVMVSG 60

Query: 61  AAKSARRREQIELEHDSITVLNERIRRFHVKRESSKTAMDAEEADRYIQMVKEQQQRGLQ 120
            AKSARRREQIELE DSITVLNERIRRFHVKRESSKTAMDA EADRYIQMVKEQQQRGLQ
Sbjct: 61  TAKSARRREQIELERDSITVLNERIRRFHVKRESSKTAMDAVEADRYIQMVKEQQQRGLQ 120

Query: 121 KLKGNRQKKESDGYDYKVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGSTEPTEYVFIE 180
           KLKGNR+KKESDGYDYKVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGSTEPTEYVFIE
Sbjct: 121 KLKGNRKKKESDGYDYKVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGSTEPTEYVFIE 180

Query: 181 YADGMAKLSVKQASRMLYRYSLPNENKRPRTLSKLNDTTTWEKRKTKGKIAIQKMVVDLM 240
           YADGMAKLSVKQASRMLYRYSLPNENKRPRTLSKLNDTTTWEKRKTKGKIAIQKMVVDLM
Sbjct: 181 YADGMAKLSVKQASRMLYRYSLPNENKRPRTLSKLNDTTTWEKRKTKGKIAIQKMVVDLM 240

Query: 241 ELYLHRLKQRRPPYPKCSAMEEFAAQFSYTPTVDQKEAFRDVEKDLTERETPMDRLICGD 300
           ELYLHRLKQRRPPYPKCSAMEEFAAQFSYTPTVDQKEAFRDVEKDLTERETPMDRLICGD
Sbjct: 241 ELYLHRLKQRRPPYPKCSAMEEFAAQFSYTPTVDQKEAFRDVEKDLTERETPMDRLICGD 300

Query: 301 VGFGKTEVALRAIFYVVSAGKQAMVLAPTIVLAKQHFEVITHRFSSFPDVQIGLLSRFQV 360
           VGFGKTEVALRAIFYVVSAGKQAMVLAPTIVLAKQHFEVIT RFSSFPDVQIGLLSRFQ 
Sbjct: 301 VGFGKTEVALRAIFYVVSAGKQAMVLAPTIVLAKQHFEVITQRFSSFPDVQIGLLSRFQT 360

Query: 361 QLDK 365
           + +K
Sbjct: 361 KSEK 364

[Close]

BLAST of Carg17760 vs. ExPASy TrEMBL
Match: A0A6J1CJT5 (ATP-dependent DNA helicase At3g02060, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011831 PE=4 SV=1)

HSP 1 Score: 636.3 bits (1640), Expect = 7.6e-179
Identity = 320/364 (87.91%), Postives = 340/364 (93.41%), Query Frame = 0


Query: 1   MALLLPTADVSSSRPLVAFRLGSFPKLWGLFNRNCNLRHFSKRCVSITNVVYAEDVMVPG 60
           MALL P  DVS+ RPLVAFRLGSFP+ W LFNRNC LR   KRC+S+TNVVYAEDVMVPG
Sbjct: 1   MALLSPAPDVSTFRPLVAFRLGSFPRQWRLFNRNCTLRRCPKRCISVTNVVYAEDVMVPG 60

Query: 61  AAKSARRREQIELEHDSITVLNERIRRFHVKRESSKTAMDAEEADRYIQMVKEQQQRGLQ 120
            AKSARRREQIELE DSI++LNER+RR+H KRESS+TAMDAEEADRYIQMVKEQQQRGLQ
Sbjct: 61  TAKSARRREQIELERDSISILNERVRRYHGKRESSRTAMDAEEADRYIQMVKEQQQRGLQ 120

Query: 121 KLKGNRQKKESDGYDYKVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGSTEPTEYVFIE 180
           KLKG+RQ+ ESDG++YKVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGSTEP EYVFIE
Sbjct: 121 KLKGDRQRNESDGFNYKVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGSTEPIEYVFIE 180

Query: 181 YADGMAKLSVKQASRMLYRYSLPNENKRPRTLSKLNDTTTWEKRKTKGKIAIQKMVVDLM 240
           YADGMAKL VKQASRMLYRY+LPNE KRPRTLSKLNDT+TWEKRKTKGK+AIQKMVVDLM
Sbjct: 181 YADGMAKLPVKQASRMLYRYNLPNETKRPRTLSKLNDTSTWEKRKTKGKVAIQKMVVDLM 240

Query: 241 ELYLHRLKQRRPPYPKCSAMEEFAAQFSYTPTVDQKEAFRDVEKDLTERETPMDRLICGD 300
           ELYLHRLKQRRPPYPKCSAME+FAAQF Y PTVDQKEAF DVEKDLTERETPMDRLICGD
Sbjct: 241 ELYLHRLKQRRPPYPKCSAMEDFAAQFPYEPTVDQKEAFSDVEKDLTERETPMDRLICGD 300

Query: 301 VGFGKTEVALRAIFYVVSAGKQAMVLAPTIVLAKQHFEVITHRFSSFPDVQIGLLSRFQV 360
           VGFGKTEVALRAIF VVS+GKQAMVLAPTIVLAKQHFEVIT RFSSFPDVQIGLLSRFQ 
Sbjct: 301 VGFGKTEVALRAIFCVVSSGKQAMVLAPTIVLAKQHFEVITQRFSSFPDVQIGLLSRFQT 360

Query: 361 QLDK 365
           + +K
Sbjct: 361 KAEK 364

[Close]

BLAST of Carg17760 vs. ExPASy TrEMBL
Match: A0A6J1CI23 (ATP-dependent DNA helicase At3g02060, chloroplastic isoform X3 OS=Momordica charantia OX=3673 GN=LOC111011831 PE=4 SV=1)

HSP 1 Score: 636.3 bits (1640), Expect = 7.6e-179
Identity = 320/364 (87.91%), Postives = 340/364 (93.41%), Query Frame = 0


Query: 1   MALLLPTADVSSSRPLVAFRLGSFPKLWGLFNRNCNLRHFSKRCVSITNVVYAEDVMVPG 60
           MALL P  DVS+ RPLVAFRLGSFP+ W LFNRNC LR   KRC+S+TNVVYAEDVMVPG
Sbjct: 1   MALLSPAPDVSTFRPLVAFRLGSFPRQWRLFNRNCTLRRCPKRCISVTNVVYAEDVMVPG 60

Query: 61  AAKSARRREQIELEHDSITVLNERIRRFHVKRESSKTAMDAEEADRYIQMVKEQQQRGLQ 120
            AKSARRREQIELE DSI++LNER+RR+H KRESS+TAMDAEEADRYIQMVKEQQQRGLQ
Sbjct: 61  TAKSARRREQIELERDSISILNERVRRYHGKRESSRTAMDAEEADRYIQMVKEQQQRGLQ 120

Query: 121 KLKGNRQKKESDGYDYKVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGSTEPTEYVFIE 180
           KLKG+RQ+ ESDG++YKVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGSTEP EYVFIE
Sbjct: 121 KLKGDRQRNESDGFNYKVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGSTEPIEYVFIE 180

Query: 181 YADGMAKLSVKQASRMLYRYSLPNENKRPRTLSKLNDTTTWEKRKTKGKIAIQKMVVDLM 240
           YADGMAKL VKQASRMLYRY+LPNE KRPRTLSKLNDT+TWEKRKTKGK+AIQKMVVDLM
Sbjct: 181 YADGMAKLPVKQASRMLYRYNLPNETKRPRTLSKLNDTSTWEKRKTKGKVAIQKMVVDLM 240

Query: 241 ELYLHRLKQRRPPYPKCSAMEEFAAQFSYTPTVDQKEAFRDVEKDLTERETPMDRLICGD 300
           ELYLHRLKQRRPPYPKCSAME+FAAQF Y PTVDQKEAF DVEKDLTERETPMDRLICGD
Sbjct: 241 ELYLHRLKQRRPPYPKCSAMEDFAAQFPYEPTVDQKEAFSDVEKDLTERETPMDRLICGD 300

Query: 301 VGFGKTEVALRAIFYVVSAGKQAMVLAPTIVLAKQHFEVITHRFSSFPDVQIGLLSRFQV 360
           VGFGKTEVALRAIF VVS+GKQAMVLAPTIVLAKQHFEVIT RFSSFPDVQIGLLSRFQ 
Sbjct: 301 VGFGKTEVALRAIFCVVSSGKQAMVLAPTIVLAKQHFEVITQRFSSFPDVQIGLLSRFQT 360

Query: 361 QLDK 365
           + +K
Sbjct: 361 KAEK 364

[Close]

BLAST of Carg17760 vs. ExPASy TrEMBL
Match: A0A6J1CIL1 (ATP-dependent DNA helicase At3g02060, chloroplastic isoform X2 OS=Momordica charantia OX=3673 GN=LOC111011831 PE=4 SV=1)

HSP 1 Score: 636.3 bits (1640), Expect = 7.6e-179
Identity = 320/364 (87.91%), Postives = 340/364 (93.41%), Query Frame = 0


Query: 1   MALLLPTADVSSSRPLVAFRLGSFPKLWGLFNRNCNLRHFSKRCVSITNVVYAEDVMVPG 60
           MALL P  DVS+ RPLVAFRLGSFP+ W LFNRNC LR   KRC+S+TNVVYAEDVMVPG
Sbjct: 1   MALLSPAPDVSTFRPLVAFRLGSFPRQWRLFNRNCTLRRCPKRCISVTNVVYAEDVMVPG 60

Query: 61  AAKSARRREQIELEHDSITVLNERIRRFHVKRESSKTAMDAEEADRYIQMVKEQQQRGLQ 120
            AKSARRREQIELE DSI++LNER+RR+H KRESS+TAMDAEEADRYIQMVKEQQQRGLQ
Sbjct: 61  TAKSARRREQIELERDSISILNERVRRYHGKRESSRTAMDAEEADRYIQMVKEQQQRGLQ 120

Query: 121 KLKGNRQKKESDGYDYKVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGSTEPTEYVFIE 180
           KLKG+RQ+ ESDG++YKVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGSTEP EYVFIE
Sbjct: 121 KLKGDRQRNESDGFNYKVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGSTEPIEYVFIE 180

Query: 181 YADGMAKLSVKQASRMLYRYSLPNENKRPRTLSKLNDTTTWEKRKTKGKIAIQKMVVDLM 240
           YADGMAKL VKQASRMLYRY+LPNE KRPRTLSKLNDT+TWEKRKTKGK+AIQKMVVDLM
Sbjct: 181 YADGMAKLPVKQASRMLYRYNLPNETKRPRTLSKLNDTSTWEKRKTKGKVAIQKMVVDLM 240

Query: 241 ELYLHRLKQRRPPYPKCSAMEEFAAQFSYTPTVDQKEAFRDVEKDLTERETPMDRLICGD 300
           ELYLHRLKQRRPPYPKCSAME+FAAQF Y PTVDQKEAF DVEKDLTERETPMDRLICGD
Sbjct: 241 ELYLHRLKQRRPPYPKCSAMEDFAAQFPYEPTVDQKEAFSDVEKDLTERETPMDRLICGD 300

Query: 301 VGFGKTEVALRAIFYVVSAGKQAMVLAPTIVLAKQHFEVITHRFSSFPDVQIGLLSRFQV 360
           VGFGKTEVALRAIF VVS+GKQAMVLAPTIVLAKQHFEVIT RFSSFPDVQIGLLSRFQ 
Sbjct: 301 VGFGKTEVALRAIFCVVSSGKQAMVLAPTIVLAKQHFEVITQRFSSFPDVQIGLLSRFQT 360

Query: 361 QLDK 365
           + +K
Sbjct: 361 KAEK 364

[Close]

BLAST of Carg17760 vs. TAIR 10
Match: AT3G02060.1 (DEAD/DEAH box helicase, putative )

HSP 1 Score: 449.5 bits (1155), Expect = 2.5e-126
Identity = 251/368 (68.21%), Postives = 294/368 (79.89%), Query Frame = 0


Query: 1   MALLLPTADVSSSRPLVAFRLGSFPKLWGLFNRNCNLRHFSKRCVSITNVVYAEDVMVPG 60
           M  LLP  D   + PLV  +L SFP    LF  +  LR F+++  S+  +V A   +   
Sbjct: 1   MMSLLPNPD-PITVPLV-LKLCSFPPPRRLF--SLRLRRFTRKSSSLLPLV-AVSSLSAT 60

Query: 61  AAKSARRREQIEL-EHDSITVLNERIRRFHVKRESSKTAMDAEEADRYIQMVKEQQQRGL 120
           AAK  R RE+ EL E DSI++LNERIRR   KRE+++ AMD+EEA++YI MVKEQQ+RGL
Sbjct: 61  AAKPTRWREKPELAESDSISLLNERIRRDLGKRETARPAMDSEEAEKYIHMVKEQQERGL 120

Query: 121 QKLKGNRQ--KKESDG-YDYKVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGSTEPTEY 180
           QKLKG RQ  K   DG + YKVDPY+L SGDYVVHKKVGIGRFVGIKFDV K S+EP EY
Sbjct: 121 QKLKGIRQGTKAAGDGAFSYKVDPYSLLSGDYVVHKKVGIGRFVGIKFDVPKDSSEPLEY 180

Query: 181 VFIEYADGMAKLSVKQASRMLYRYSLPNENKRPRTLSKLNDTTTWEKRKTKGKIAIQKMV 240
           VFIEYADGMAKL +KQASR+LYRY+LPNE KRPRTLS+L+DT+ WE+RKTKGK+AIQKMV
Sbjct: 181 VFIEYADGMAKLPLKQASRLLYRYNLPNETKRPRTLSRLSDTSVWERRKTKGKVAIQKMV 240

Query: 241 VDLMELYLHRLKQRRPPYPKCSAMEEFAAQFSYTPTVDQKEAFRDVEKDLTERETPMDRL 300
           VDLMELYLHRL+Q+R PYPK   M +FAAQF Y  T DQK+AF DVEKDLTERETPMDRL
Sbjct: 241 VDLMELYLHRLRQKRYPYPKNPIMADFAAQFPYNATPDQKQAFLDVEKDLTERETPMDRL 300

Query: 301 ICGDVGFGKTEVALRAIFYVVSAGKQAMVLAPTIVLAKQHFEVITHRFSSFPDVQIGLLS 360
           ICGDVGFGKTEVALRAIF VVS GKQAMVLAPTIVLAKQH++VI+ RFS +P +++GLLS
Sbjct: 301 ICGDVGFGKTEVALRAIFCVVSTGKQAMVLAPTIVLAKQHYDVISERFSLYPHIKVGLLS 360

Query: 361 RFQVQLDK 365
           RFQ + +K
Sbjct: 361 RFQTKAEK 363

[Close]

BLAST of Carg17760 vs. TAIR 10
Match: AT3G02060.2 (DEAD/DEAH box helicase, putative )

HSP 1 Score: 449.5 bits (1155), Expect = 2.5e-126
Identity = 250/365 (68.49%), Postives = 293/365 (80.27%), Query Frame = 0


Query: 4   LLPTADVSSSRPLVAFRLGSFPKLWGLFNRNCNLRHFSKRCVSITNVVYAEDVMVPGAAK 63
           LLP  D   + PLV  +L SFP    LF  +  LR F+++  S+  +V A   +   AAK
Sbjct: 3   LLPNPD-PITVPLV-LKLCSFPPPRRLF--SLRLRRFTRKSSSLLPLV-AVSSLSATAAK 62

Query: 64  SARRREQIEL-EHDSITVLNERIRRFHVKRESSKTAMDAEEADRYIQMVKEQQQRGLQKL 123
             R RE+ EL E DSI++LNERIRR   KRE+++ AMD+EEA++YI MVKEQQ+RGLQKL
Sbjct: 63  PTRWREKPELAESDSISLLNERIRRDLGKRETARPAMDSEEAEKYIHMVKEQQERGLQKL 122

Query: 124 KGNRQ--KKESDG-YDYKVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGSTEPTEYVFI 183
           KG RQ  K   DG + YKVDPY+L SGDYVVHKKVGIGRFVGIKFDV K S+EP EYVFI
Sbjct: 123 KGIRQGTKAAGDGAFSYKVDPYSLLSGDYVVHKKVGIGRFVGIKFDVPKDSSEPLEYVFI 182

Query: 184 EYADGMAKLSVKQASRMLYRYSLPNENKRPRTLSKLNDTTTWEKRKTKGKIAIQKMVVDL 243
           EYADGMAKL +KQASR+LYRY+LPNE KRPRTLS+L+DT+ WE+RKTKGK+AIQKMVVDL
Sbjct: 183 EYADGMAKLPLKQASRLLYRYNLPNETKRPRTLSRLSDTSVWERRKTKGKVAIQKMVVDL 242

Query: 244 MELYLHRLKQRRPPYPKCSAMEEFAAQFSYTPTVDQKEAFRDVEKDLTERETPMDRLICG 303
           MELYLHRL+Q+R PYPK   M +FAAQF Y  T DQK+AF DVEKDLTERETPMDRLICG
Sbjct: 243 MELYLHRLRQKRYPYPKNPIMADFAAQFPYNATPDQKQAFLDVEKDLTERETPMDRLICG 302

Query: 304 DVGFGKTEVALRAIFYVVSAGKQAMVLAPTIVLAKQHFEVITHRFSSFPDVQIGLLSRFQ 363
           DVGFGKTEVALRAIF VVS GKQAMVLAPTIVLAKQH++VI+ RFS +P +++GLLSRFQ
Sbjct: 303 DVGFGKTEVALRAIFCVVSTGKQAMVLAPTIVLAKQHYDVISERFSLYPHIKVGLLSRFQ 362

Query: 364 VQLDK 365
            + +K
Sbjct: 363 TKAEK 362

[Close]

BLAST of Carg17760 vs. TAIR 10
Match: AT2G01440.1 (DEAD/DEAH box RNA helicase family protein )

HSP 1 Score: 57.8 bits (138), Expect = 2.2e-08
Identity = 34/78 (43.59%), Postives = 46/78 (58.97%), Query Frame = 0


Query: 261 EEFAAQFSYTPTVDQKEAFRDVEKDLTERETPMDRLICGDVGFGKTEVALRAIFYVVSAG 320
           + F     Y+ T  Q  A  ++  DL +R  PM+RL+ GDVG GKT VA  A   V+ +G
Sbjct: 512 KSFLKALPYSLTPSQLSAVSEIIWDL-KRPVPMNRLLQGDVGCGKTVVAFLACMEVIGSG 571

Query: 321 KQAMVLAPTIVLAKQHFE 339
            QA  +APT +LA QH+E
Sbjct: 572 YQAAFMAPTELLAIQHYE 588

The following BLAST results are available for this feature:

BLAST of Carg17760 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032664.1	3.2e-203	100.00	ATP-dependent DNA helicase, chloroplastic [Cucurbita argyrosperma subsp. argyros...	[more]
KAG6601968.1	2.5e-200	98.90	ATP-dependent DNA helicase, chloroplastic, partial [Cucurbita argyrosperma subsp...	[more]
XP_022957218.1	2.5e-200	98.90	ATP-dependent DNA helicase At3g02060, chloroplastic [Cucurbita moschata] >XP_022...	[more]
XP_023529599.1	5.8e-197	97.80	ATP-dependent DNA helicase At3g02060, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022990814.1	1.3e-193	96.70	ATP-dependent DNA helicase At3g02060, chloroplastic [Cucurbita maxima] >XP_02299...	[more]

BLAST of Carg17760 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JFJ3	3.6e-125	68.21	ATP-dependent DNA helicase At3g02060, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
Q55750	1.1e-38	44.64	Transcription-repair-coupling factor OS=Synechocystis sp. (strain PCC 6803 / Kaz...	[more]
P37474	1.6e-32	40.45	Transcription-repair-coupling factor OS=Bacillus subtilis (strain 168) OX=224308...	[more]
Q49V12	3.7e-29	35.27	Transcription-repair-coupling factor OS=Staphylococcus saprophyticus subsp. sapr...	[more]
Q5HRQ2	4.8e-29	36.58	Transcription-repair-coupling factor OS=Staphylococcus epidermidis (strain ATCC ...	[more]

BLAST of Carg17760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GZL7	1.2e-200	98.90	ATP-dependent DNA helicase At3g02060, chloroplastic OS=Cucurbita moschata OX=366...	[more]
A0A6J1JT22	6.4e-194	96.70	ATP-dependent DNA helicase At3g02060, chloroplastic OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1CJT5	7.6e-179	87.91	ATP-dependent DNA helicase At3g02060, chloroplastic isoform X1 OS=Momordica char...	[more]
A0A6J1CI23	7.6e-179	87.91	ATP-dependent DNA helicase At3g02060, chloroplastic isoform X3 OS=Momordica char...	[more]
A0A6J1CIL1	7.6e-179	87.91	ATP-dependent DNA helicase At3g02060, chloroplastic isoform X2 OS=Momordica char...	[more]

BLAST of Carg17760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G02060.1	2.5e-126	68.21	DEAD/DEAH box helicase, putative	[more]
AT3G02060.2	2.5e-126	68.49	DEAD/DEAH box helicase, putative	[more]
AT2G01440.1	2.2e-08	43.59	DEAD/DEAH box RNA helicase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 112..132
None	No IPR available	GENE3D	2.40.10.170		coord: 142..192 e-value: 2.8E-10 score: 41.8
None	No IPR available	PANTHER	PTHR14025:SF29	TRANSCRIPTION-REPAIR-COUPLING FACTOR	coord: 42..363
None	No IPR available	PANTHER	PTHR14025	FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER	coord: 42..363
IPR003711	CarD-like/TRCF domain	SMART	SM01058	CarD_TRCF_2	coord: 142..244 e-value: 8.7E-19 score: 78.4
IPR003711	CarD-like/TRCF domain	PFAM	PF02559	CarD_CdnL_TRCF	coord: 143..243 e-value: 3.7E-15 score: 56.4
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 210..364 e-value: 6.7E-37 score: 129.0
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 201..359
IPR011545	DEAD/DEAH box helicase domain	PFAM	PF00270	DEAD	coord: 293..346 e-value: 4.0E-7 score: 30.0
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 286..365 score: 10.175852
IPR036101	CarD-like/TRCF domain superfamily	SUPERFAMILY	141259	CarD-like	coord: 137..207

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17760-RA	Carg17760-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
biological_process	GO:0015031	protein transport
biological_process	GO:0010587	miRNA catabolic process
biological_process	GO:0000967	rRNA 5'-end processing
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0000956	nuclear-transcribed mRNA catabolic process
biological_process	GO:0071035	nuclear polyadenylation-dependent rRNA catabolic process
biological_process	GO:0060149	negative regulation of posttranscriptional gene silencing
biological_process	GO:0006397	mRNA processing
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0004534	5'-3' exoribonuclease activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003676	nucleic acid binding