Carg17748 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg17748
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein SENSITIVITY TO RED LIGHT REDUCED 1-like
Location	Carg_Chr04: 17416927 .. 17417760 (-)
RNA-Seq Expression	Carg17748
Synteny	Carg17748

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCGTCGGCAAAAACTCTTGCTATTCCGGATCAGTCGAATAATGGCGACTGGACGGTTGTTTTACCTCGTCGTGGCAGGCAGAGGAAGAATTTGCCGAAGCTAAGAAAACAAGAAGATCAGCGGACTTGGTCTCCGTCTGATCAGGCCAATGATACAATCAGGGAATCGAAACTGTTGCATAAGATGGAAATCTGTATTAAGAAAGTTGAGATCTCCCAATTTTATCGAACTCTTGTTGGTGAGCTTGAAACGATGCCAGTCTTGGAATCCTTGAATAGGGTTTTGGCCTCGGAGTCGAAGATGGGGATGGTTTTCTATGGCGTAGGAAGCATTGAAAATTATGAAAATCCTCGATTGCAGCTCAGTCTTGCTATATTGTTGAAGAGAAAATTTAGTTGGATTGGAAGTTTAGAAGTGTTCGATCCAATTCTTTCCGCAATCGAATGTCGGGTTATCGAATCCTTTGGTTGTTCTGTTCTATCAGTAAATGAGCAAGGACGGCGATGTGCGCAGAAGCCAACAATGTTCTTCATGCCCCATTGCGAGGCAGAGCTGTACAACAATCTTTTACAGGAGAATTGGACGGTGGAGCTGTTGAATCATGTTGTGCTGTTTGGAAATAGCTTTGAGATCTATGAGCAGTTTGTGTCTGAATTCAAGAACTCACCCGTTGTTGATTCGGCAAAGTACATCTTGGCCTCTAGAAAATTCTCACGCGAGATCAAAATCAAGACACTTTCAGATGAATATTTTGGTGCTTTCCATGATTCAAGTTGGCATTTTTTCAGCCCTTTTTTACCGACAGAGCTGCAGTTCACAGATCTTTGA

mRNA sequence

ATGGCAGCGTCGGCAAAAACTCTTGCTATTCCGGATCAGTCGAATAATGGCGACTGGACGGTTGTTTTACCTCGTCGTGGCAGGCAGAGGAAGAATTTGCCGAAGCTAAGAAAACAAGAAGATCAGCGGACTTGGTCTCCGTCTGATCAGGCCAATGATACAATCAGGGAATCGAAACTGTTGCATAAGATGGAAATCTGTATTAAGAAAGTTGAGATCTCCCAATTTTATCGAACTCTTGTTGGTGAGCTTGAAACGATGCCAGTCTTGGAATCCTTGAATAGGGTTTTGGCCTCGGAGTCGAAGATGGGGATGGTTTTCTATGGCGTAGGAAGCATTGAAAATTATGAAAATCCTCGATTGCAGCTCAGTCTTGCTATATTGTTGAAGAGAAAATTTAGTTGGATTGGAAGTTTAGAAGTGTTCGATCCAATTCTTTCCGCAATCGAATGTCGGGTTATCGAATCCTTTGGTTGTTCTGTTCTATCAGTAAATGAGCAAGGACGGCGATGTGCGCAGAAGCCAACAATGTTCTTCATGCCCCATTGCGAGGCAGAGCTGTACAACAATCTTTTACAGGAGAATTGGACGGTGGAGCTGTTGAATCATGTTGTGCTGTTTGGAAATAGCTTTGAGATCTATGAGCAGTTTGTGTCTGAATTCAAGAACTCACCCGTTGTTGATTCGGCAAAGTACATCTTGGCCTCTAGAAAATTCTCACGCGAGATCAAAATCAAGACACTTTCAGATGAATATTTTGGTGCTTTCCATGATTCAAGTTGGCATTTTTTCAGCCCTTTTTTACCGACAGAGCTGCAGTTCACAGATCTTTGA

Coding sequence (CDS)

ATGGCAGCGTCGGCAAAAACTCTTGCTATTCCGGATCAGTCGAATAATGGCGACTGGACGGTTGTTTTACCTCGTCGTGGCAGGCAGAGGAAGAATTTGCCGAAGCTAAGAAAACAAGAAGATCAGCGGACTTGGTCTCCGTCTGATCAGGCCAATGATACAATCAGGGAATCGAAACTGTTGCATAAGATGGAAATCTGTATTAAGAAAGTTGAGATCTCCCAATTTTATCGAACTCTTGTTGGTGAGCTTGAAACGATGCCAGTCTTGGAATCCTTGAATAGGGTTTTGGCCTCGGAGTCGAAGATGGGGATGGTTTTCTATGGCGTAGGAAGCATTGAAAATTATGAAAATCCTCGATTGCAGCTCAGTCTTGCTATATTGTTGAAGAGAAAATTTAGTTGGATTGGAAGTTTAGAAGTGTTCGATCCAATTCTTTCCGCAATCGAATGTCGGGTTATCGAATCCTTTGGTTGTTCTGTTCTATCAGTAAATGAGCAAGGACGGCGATGTGCGCAGAAGCCAACAATGTTCTTCATGCCCCATTGCGAGGCAGAGCTGTACAACAATCTTTTACAGGAGAATTGGACGGTGGAGCTGTTGAATCATGTTGTGCTGTTTGGAAATAGCTTTGAGATCTATGAGCAGTTTGTGTCTGAATTCAAGAACTCACCCGTTGTTGATTCGGCAAAGTACATCTTGGCCTCTAGAAAATTCTCACGCGAGATCAAAATCAAGACACTTTCAGATGAATATTTTGGTGCTTTCCATGATTCAAGTTGGCATTTTTTCAGCCCTTTTTTACCGACAGAGCTGCAGTTCACAGATCTTTGA

Protein sequence

MAASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKLLHKMEICIKKVEISQFYRTLVGELETMPVLESLNRVLASESKMGMVFYGVGSIENYENPRLQLSLAILLKRKFSWIGSLEVFDPILSAIECRVIESFGCSVLSVNEQGRRCAQKPTMFFMPHCEAELYNNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFSREIKIKTLSDEYFGAFHDSSWHFFSPFLPTELQFTDL

Homology

[Close]

BLAST of Carg17748 vs. NCBI nr
Match: KAG7032652.1 (Protein SENSITIVITY TO RED LIGHT REDUCED 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 557.4 bits (1435), Expect = 7.1e-155
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0


Query: 1   MAASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKL 60
           MAASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKL
Sbjct: 1   MAASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKL 60

Query: 61  LHKMEICIKKVEISQFYRTLVGELETMPVLESLNRVLASESKMGMVFYGVGSIENYENPR 120
           LHKMEICIKKVEISQFYRTLVGELETMPVLESLNRVLASESKMGMVFYGVGSIENYENPR
Sbjct: 61  LHKMEICIKKVEISQFYRTLVGELETMPVLESLNRVLASESKMGMVFYGVGSIENYENPR 120

Query: 121 LQLSLAILLKRKFSWIGSLEVFDPILSAIECRVIESFGCSVLSVNEQGRRCAQKPTMFFM 180
           LQLSLAILLKRKFSWIGSLEVFDPILSAIECRVIESFGCSVLSVNEQGRRCAQKPTMFFM
Sbjct: 121 LQLSLAILLKRKFSWIGSLEVFDPILSAIECRVIESFGCSVLSVNEQGRRCAQKPTMFFM 180

Query: 181 PHCEAELYNNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFS 240
           PHCEAELYNNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFS
Sbjct: 181 PHCEAELYNNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFS 240

Query: 241 REIKIKTLSDEYFGAFHDSSWHFFSPFLPTELQFTDL 278
           REIKIKTLSDEYFGAFHDSSWHFFSPFLPTELQFTDL
Sbjct: 241 REIKIKTLSDEYFGAFHDSSWHFFSPFLPTELQFTDL 277

[Close]

BLAST of Carg17748 vs. NCBI nr
Match: KAG6601957.1 (Protein SENSITIVITY TO RED LIGHT REDUCED 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 555.1 bits (1429), Expect = 3.5e-154
Identity = 276/277 (99.64%), Postives = 276/277 (99.64%), Query Frame = 0


Query: 1   MAASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKL 60
           MAASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKL
Sbjct: 1   MAASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKL 60

Query: 61  LHKMEICIKKVEISQFYRTLVGELETMPVLESLNRVLASESKMGMVFYGVGSIENYENPR 120
            HKMEICIKKVEISQFYRTLVGELETMPVLESLNRVLASESKMGMVFYGVGSIENYENPR
Sbjct: 61  SHKMEICIKKVEISQFYRTLVGELETMPVLESLNRVLASESKMGMVFYGVGSIENYENPR 120

Query: 121 LQLSLAILLKRKFSWIGSLEVFDPILSAIECRVIESFGCSVLSVNEQGRRCAQKPTMFFM 180
           LQLSLAILLKRKFSWIGSLEVFDPILSAIECRVIESFGCSVLSVNEQGRRCAQKPTMFFM
Sbjct: 121 LQLSLAILLKRKFSWIGSLEVFDPILSAIECRVIESFGCSVLSVNEQGRRCAQKPTMFFM 180

Query: 181 PHCEAELYNNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFS 240
           PHCEAELYNNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFS
Sbjct: 181 PHCEAELYNNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFS 240

Query: 241 REIKIKTLSDEYFGAFHDSSWHFFSPFLPTELQFTDL 278
           REIKIKTLSDEYFGAFHDSSWHFFSPFLPTELQFTDL
Sbjct: 241 REIKIKTLSDEYFGAFHDSSWHFFSPFLPTELQFTDL 277

[Close]

BLAST of Carg17748 vs. NCBI nr
Match: XP_023553043.1 (protein SENSITIVITY TO RED LIGHT REDUCED 1-like [Cucurbita pepo subsp. pepo] >XP_023553053.1 protein SENSITIVITY TO RED LIGHT REDUCED 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 536.2 bits (1380), Expect = 1.7e-148
Identity = 267/277 (96.39%), Postives = 269/277 (97.11%), Query Frame = 0


Query: 1   MAASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKL 60
           M ASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKL
Sbjct: 1   MTASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKL 60

Query: 61  LHKMEICIKKVEISQFYRTLVGELETMPVLESLNRVLASESKMGMVFYGVGSIENYENPR 120
           LHKMEICI+KVE SQFYRTLV ELETMPVLESLNRVLASESKMGMV YGVGSIENYENPR
Sbjct: 61  LHKMEICIEKVESSQFYRTLVDELETMPVLESLNRVLASESKMGMVIYGVGSIENYENPR 120

Query: 121 LQLSLAILLKRKFSWIGSLEVFDPILSAIECRVIESFGCSVLSVNEQGRRCAQKPTMFFM 180
           LQLSLAILLKRKFSWIG LEVFDPILSAIECRVIESFGCS+LSVNEQGRRCAQKPTMFFM
Sbjct: 121 LQLSLAILLKRKFSWIGRLEVFDPILSAIECRVIESFGCSILSVNEQGRRCAQKPTMFFM 180

Query: 181 PHCEAELYNNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFS 240
           PHCEAELYNNLLQENWT ELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFS
Sbjct: 181 PHCEAELYNNLLQENWTGELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFS 240

Query: 241 REIKIKTLSDEYFGAFHDSSWHFFSPFLPTELQFTDL 278
           REIKIKTLSDEYFGAFHDSSWHFFS  LPTELQFTDL
Sbjct: 241 REIKIKTLSDEYFGAFHDSSWHFFSTVLPTELQFTDL 277

[Close]

BLAST of Carg17748 vs. NCBI nr
Match: XP_022964146.1 (protein SENSITIVITY TO RED LIGHT REDUCED 1-like [Cucurbita moschata] >XP_022964155.1 protein SENSITIVITY TO RED LIGHT REDUCED 1-like [Cucurbita moschata] >XP_022964166.1 protein SENSITIVITY TO RED LIGHT REDUCED 1-like [Cucurbita moschata])

HSP 1 Score: 529.3 bits (1362), Expect = 2.1e-146
Identity = 267/277 (96.39%), Postives = 269/277 (97.11%), Query Frame = 0


Query: 1   MAASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKL 60
           MAASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKL
Sbjct: 1   MAASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKL 60

Query: 61  LHKMEICIKKVEISQFYRTLVGELETMPVLESLNRVLASESKMGMVFYGVGSIENYENPR 120
           LHKMEICIKKVE SQFYRTLV ELE MPVLESLNRVLASESKMGMVFYGVGSIENYENPR
Sbjct: 61  LHKMEICIKKVESSQFYRTLVDELEMMPVLESLNRVLASESKMGMVFYGVGSIENYENPR 120

Query: 121 LQLSLAILLKRKFSWIGSLEVFDPILSAIECRVIESFGCSVLSVNEQGRRCAQKPTMFFM 180
           LQLSLAILLKRKFSWIG LEVFDPILSAIEC+VIESFGCSVLSVNEQGRRCAQKPTMFFM
Sbjct: 121 LQLSLAILLKRKFSWIGRLEVFDPILSAIECQVIESFGCSVLSVNEQGRRCAQKPTMFFM 180

Query: 181 PHCEAELYNNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFS 240
           PHCEAELY+NLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFS
Sbjct: 181 PHCEAELYSNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFS 240

Query: 241 REIKIKTLSDEYFGAFHDSSWHFFSPFLPTELQFTDL 278
           REIKIKTLSDEYFGA   SSWH FSPFLPTELQFTDL
Sbjct: 241 REIKIKTLSDEYFGA---SSWHVFSPFLPTELQFTDL 274

[Close]

BLAST of Carg17748 vs. NCBI nr
Match: KAG6579107.1 (Protein SENSITIVITY TO RED LIGHT REDUCED 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 509.6 bits (1311), Expect = 1.7e-140
Identity = 252/277 (90.97%), Postives = 262/277 (94.58%), Query Frame = 0


Query: 1   MAASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKL 60
           MAASAKTLA+PDQSNNGDWTVVLPRRGRQRK  PKLR +EDQRTWSP+DQANDTIRESKL
Sbjct: 1   MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSPTDQANDTIRESKL 60

Query: 61  LHKMEICIKKVEISQFYRTLVGELETMPVLESLNRVLASESKMGMVFYGVGSIENYENPR 120
           L KMEICIKKVE SQFYRTL+ EL T PVLESLNRVLASESKM MV YGVGSIENYENPR
Sbjct: 61  LQKMEICIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYENPR 120

Query: 121 LQLSLAILLKRKFSWIGSLEVFDPILSAIECRVIESFGCSVLSVNEQGRRCAQKPTMFFM 180
           LQLSLAILLKRKFSWIGSLEVFDPILSA ECRV+ SFGCSVLSVNE+GRRCAQK T+FFM
Sbjct: 121 LQLSLAILLKRKFSWIGSLEVFDPILSATECRVMASFGCSVLSVNEEGRRCAQKATLFFM 180

Query: 181 PHCEAELYNNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFS 240
           PHCEAELYNNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFK+SPVVDSAKYILASRKF+
Sbjct: 181 PHCEAELYNNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRKFT 240

Query: 241 REIKIKTLSDEYFGAFHDSSWHFFSPFLPTELQFTDL 278
           REIKIKTLSD+YFGAFHDSSWHFFSP  PTELQFTDL
Sbjct: 241 REIKIKTLSDDYFGAFHDSSWHFFSPVSPTELQFTDL 277

[Close]

BLAST of Carg17748 vs. ExPASy Swiss-Prot
Match: Q8GWZ6 (Protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Arabidopsis thaliana OX=3702 GN=SRR1 PE=2 SV=2)

HSP 1 Score: 276.9 bits (707), Expect = 2.4e-73
Identity = 137/267 (51.31%), Postives = 195/267 (73.03%), Query Frame = 0


Query: 10  IPDQSNNGDWTVVLP---RRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKLLHKMEI 69
           + + S++G+W VVLP   R+GR+RK  PK + +E+++ W   D   D  R+++L  KMEI
Sbjct: 5   VKNSSSDGEWKVVLPSKGRQGRRRKPKPKGQAEEEEQPWKSDDLEIDPQRQARLKQKMEI 64

Query: 70  CIKKVEISQFYRTLVGELETMPVLESLNRVLASESKMGMVFYGVGSIENYENPRLQLSLA 129
            +KK+E S FY   + +L++  V   +  VL SE+++ MV YG+GSIE+YE+PR QLS+A
Sbjct: 65  SLKKIESSSFYTAFLEQLKSPEVSNQIRLVLGSETQLQMVMYGIGSIESYESPRFQLSIA 124

Query: 130 ILLKRKFSWIG-SLEVFDPILSAIECRVIESFGCSVLSVNEQGRRCAQKPTMFFMPHCEA 189
           IL+KR+F W+G ++EVFDP+LSA E   +ES GCSVLSVNEQ RR A KPT+FFMPHCEA
Sbjct: 125 ILMKREFDWVGDNIEVFDPVLSATESSYLESLGCSVLSVNEQARREALKPTLFFMPHCEA 184

Query: 190 ELYNNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFSREIKI 249
            LY+NLLQ NW ++ L+ + LFGNSF++YE+ VS   ++ V+ + K I+A+++ + E  I
Sbjct: 185 NLYSNLLQANWRMDRLSKIALFGNSFQMYEEQVS--FDAEVICATKRIIAAQRVTSEFAI 244

Query: 250 KTLSDEYFGAFHDSSWHFFSPFLPTEL 273
           +T SD+YF AFHDSSWHFFS  + +EL
Sbjct: 245 ETESDDYFAAFHDSSWHFFSSGIDSEL 269

[Close]

BLAST of Carg17748 vs. ExPASy Swiss-Prot
Match: Q8K2M3 (SRR1-like protein OS=Mus musculus OX=10090 GN=Srrd PE=2 SV=4)

HSP 1 Score: 98.2 bits (243), Expect = 1.5e-19
Identity = 73/216 (33.80%), Postives = 111/216 (51.39%), Query Frame = 0


Query: 19  WTVVLPRRGRQRKNLPKLRKQEDQRTWSPSD---------QANDTIRE----SKLLHKME 78
           W+ V PRR R+R    + R  E  R    +D         +A + +R     S  L  + 
Sbjct: 9   WSAVAPRR-RKRAAGRRPRPGEGPRAEPEADGEAVLRRLREAEEDLRISDFCSSALETIT 68

Query: 79  ICIKK-VEISQFYRTLVGELETMPVLESLNR--VLASESKMGMVFYGVGSIENYENPRLQ 138
            C++K +E  Q     +G L     L S ++  + +S S +  V YG+G+  +    R+Q
Sbjct: 69  ECLRKQLEQLQPLTEALGRLHLGSSLPSASQEPLASSASHVKCVCYGLGTFASCPTARIQ 128

Query: 139 LSLAILLKRKFSWIGS-LEVFDPILSAIECRVIESFGCSVLSVNEQGRRCAQ-KPTMFFM 198
           L+  +L   K     S   V+DP+ S  E  V+ S G +VLS NE+G+R  Q +PT+F+M
Sbjct: 129 LAFMLLFLEKCQVPRSHCWVYDPLFSQTEVSVLTSLGVTVLSENEEGKRSVQGQPTVFYM 188

Query: 199 PHCEAELYNNLLQENWTVELLNHVVLFGNSFEIYEQ 217
           PHC   LYNNLL  NW+ + L+ V++ GNSF   E+
Sbjct: 189 PHCGTALYNNLLWSNWSADALSRVLIIGNSFRGLEE 223

[Close]

BLAST of Carg17748 vs. ExPASy Swiss-Prot
Match: Q9UH36 (SRR1-like protein OS=Homo sapiens OX=9606 GN=SRRD PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.9e-18
Identity = 61/164 (37.20%), Postives = 93/164 (56.71%), Query Frame = 0


Query: 106 VFYGVGSIENYENPRLQLSLAILLKRKFSWIGS-LEVFDPILSAIECRVIESFGCSVLSV 165
           V YG+G+       R QL+  +LL  K     S   V+DP+ S +E  V+ + G +VLS 
Sbjct: 142 VCYGIGNFATCIVARNQLTFLLLLLEKCQIPRSHCWVYDPLFSQLEIEVLNTLGVTVLSE 201

Query: 166 NEQGRRCAQ-KPTMFFMPHCEAELYNNLLQENWTVELLNHVVLFGNSFE-IYEQFVSEF- 225
           NE+G+R  + +PT+F+M HC   LYNNLL  NW+V+ L+ +V+ GNSF+ + E+ ++   
Sbjct: 202 NEEGKRSIRGEPTIFYMLHCGTALYNNLLWSNWSVDALSKMVIIGNSFKGLEERLLARIL 261

Query: 226 -KNSPVVDSAKYILASRKFSREIKIKTLSDEYFGAFHDSSWHFF 265
            KN P      YI    K   E++    S +Y   F+D+S H+F
Sbjct: 262 QKNYP------YIAKILKGLEELEFPQTS-QYMDIFNDTSVHWF 298

[Close]

BLAST of Carg17748 vs. ExPASy Swiss-Prot
Match: Q9VEB5 (SRR1-like protein OS=Drosophila melanogaster OX=7227 GN=CG7988 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.4e-07
Identity = 58/204 (28.43%), Postives = 89/204 (43.63%), Query Frame = 0


Query: 14  SNNG-DWTVVLPRRGRQRKNLPKLRKQEDQRTWSPSDQAND--TIRESKLLHKME-ICIK 73
           SN+G D+ VV  ++   RK L     +   R  S SD   D   +   K   ++E +C +
Sbjct: 2   SNSGEDFQVVTRKKWMARKCL-----RRRDRHKSESDYLIDCPDVNVEKFQPRLENLCTE 61

Query: 74  KVEISQFYRTLVGELETMPVLESLNRVLASESKMGMVFYGVGSIENYENPRLQLSLAILL 133
             +   F   LV        LE + + L       +V  G+G      +   Q +  I L
Sbjct: 62  MCQSDYF---LVAMEALQQQLEGIRKPLER-----IVCLGLGPFSRTYHALHQAAFVIGL 121

Query: 134 KRKFSWIGSLEVFDPILSAIECRVIESFGCSVLSVNEQGRRCAQKPTMFFMPHCEAELYN 193
            R    I     FDP+    E  +I  F   ++S +  G+  A  PT++++PHC   L +
Sbjct: 122 HRHHK-IREALYFDPVFRDSEKELIRLFDGCIMSKDCAGKHEATVPTLYYLPHCPYALMH 181

Query: 194 NLLQENWTVELLNHVVLFGNSFEI 214
           N+L  NW  E L +V L  NSFE+
Sbjct: 182 NILWSNWKRETLPNVFLISNSFEM 191

[Close]

BLAST of Carg17748 vs. ExPASy TrEMBL
Match: A0A6J1HK12 (protein SENSITIVITY TO RED LIGHT REDUCED 1-like OS=Cucurbita moschata OX=3662 GN=LOC111464256 PE=3 SV=1)

HSP 1 Score: 529.3 bits (1362), Expect = 1.0e-146
Identity = 267/277 (96.39%), Postives = 269/277 (97.11%), Query Frame = 0


Query: 1   MAASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKL 60
           MAASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKL
Sbjct: 1   MAASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKL 60

Query: 61  LHKMEICIKKVEISQFYRTLVGELETMPVLESLNRVLASESKMGMVFYGVGSIENYENPR 120
           LHKMEICIKKVE SQFYRTLV ELE MPVLESLNRVLASESKMGMVFYGVGSIENYENPR
Sbjct: 61  LHKMEICIKKVESSQFYRTLVDELEMMPVLESLNRVLASESKMGMVFYGVGSIENYENPR 120

Query: 121 LQLSLAILLKRKFSWIGSLEVFDPILSAIECRVIESFGCSVLSVNEQGRRCAQKPTMFFM 180
           LQLSLAILLKRKFSWIG LEVFDPILSAIEC+VIESFGCSVLSVNEQGRRCAQKPTMFFM
Sbjct: 121 LQLSLAILLKRKFSWIGRLEVFDPILSAIECQVIESFGCSVLSVNEQGRRCAQKPTMFFM 180

Query: 181 PHCEAELYNNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFS 240
           PHCEAELY+NLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFS
Sbjct: 181 PHCEAELYSNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFS 240

Query: 241 REIKIKTLSDEYFGAFHDSSWHFFSPFLPTELQFTDL 278
           REIKIKTLSDEYFGA   SSWH FSPFLPTELQFTDL
Sbjct: 241 REIKIKTLSDEYFGA---SSWHVFSPFLPTELQFTDL 274

[Close]

BLAST of Carg17748 vs. ExPASy TrEMBL
Match: A0A6J1FGU7 (protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Cucurbita moschata OX=3662 GN=LOC111445349 PE=3 SV=1)

HSP 1 Score: 508.1 bits (1307), Expect = 2.4e-140
Identity = 251/277 (90.61%), Postives = 262/277 (94.58%), Query Frame = 0


Query: 1   MAASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKL 60
           MAASAKTLA+PDQSNNGDWTVVLPRRGRQRK  PKLR +EDQRTWSP+DQAND IRESKL
Sbjct: 1   MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSPTDQANDAIRESKL 60

Query: 61  LHKMEICIKKVEISQFYRTLVGELETMPVLESLNRVLASESKMGMVFYGVGSIENYENPR 120
           L KMEICIKKVE SQFYRTL+ EL T PVLESLNRVLASESKM MV YGVGSIENYENPR
Sbjct: 61  LQKMEICIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYENPR 120

Query: 121 LQLSLAILLKRKFSWIGSLEVFDPILSAIECRVIESFGCSVLSVNEQGRRCAQKPTMFFM 180
           LQLSLAILLKRKFSWIGSLEVFDPILSA ECRV+ESFGCSVLSVNE+GRRCAQK T+FFM
Sbjct: 121 LQLSLAILLKRKFSWIGSLEVFDPILSATECRVMESFGCSVLSVNEEGRRCAQKATLFFM 180

Query: 181 PHCEAELYNNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFS 240
           PHCEAELY+NLLQENWTVELLNHVVLFGNSFEIYEQFVSEFK+SPVVDSAKYILASRKF+
Sbjct: 181 PHCEAELYDNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRKFT 240

Query: 241 REIKIKTLSDEYFGAFHDSSWHFFSPFLPTELQFTDL 278
           REIKIKTLSD+YFGAFHDSSWHFFSP  PTELQFTDL
Sbjct: 241 REIKIKTLSDDYFGAFHDSSWHFFSPVSPTELQFTDL 277

[Close]

BLAST of Carg17748 vs. ExPASy TrEMBL
Match: A0A6J1JWJ0 (protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Cucurbita maxima OX=3661 GN=LOC111488981 PE=3 SV=1)

HSP 1 Score: 497.7 bits (1280), Expect = 3.2e-137
Identity = 246/277 (88.81%), Postives = 258/277 (93.14%), Query Frame = 0


Query: 1   MAASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKL 60
           MAASAK LA+ DQSNNGDWTVVLPRRGRQRK  PKLR +EDQRTWSP+DQANDTIRESKL
Sbjct: 1   MAASAKNLAVLDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSPTDQANDTIRESKL 60

Query: 61  LHKMEICIKKVEISQFYRTLVGELETMPVLESLNRVLASESKMGMVFYGVGSIENYENPR 120
           L KMEICIKKVE SQFYRTL+ EL T PVLESLN+ LASESKM MV YGVGSIENYENPR
Sbjct: 61  LQKMEICIKKVESSQFYRTLIDELGTTPVLESLNKALASESKMEMVIYGVGSIENYENPR 120

Query: 121 LQLSLAILLKRKFSWIGSLEVFDPILSAIECRVIESFGCSVLSVNEQGRRCAQKPTMFFM 180
           LQLSLAILLKRKFSWIGSLEVFDPILSA ECRV+ESFGCS+LSVNE+GRRCAQK T+FFM
Sbjct: 121 LQLSLAILLKRKFSWIGSLEVFDPILSATECRVMESFGCSILSVNEEGRRCAQKATLFFM 180

Query: 181 PHCEAELYNNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFS 240
           PHCEA LYNNLLQENWTVELLNHVVLFGNSFEIY QFVSEFK+SPVVDSAKYILASRKF+
Sbjct: 181 PHCEAGLYNNLLQENWTVELLNHVVLFGNSFEIYGQFVSEFKSSPVVDSAKYILASRKFT 240

Query: 241 REIKIKTLSDEYFGAFHDSSWHFFSPFLPTELQFTDL 278
           REIKIKTLSD+YFGAFHDSSWHFFSP  PTELQFTDL
Sbjct: 241 REIKIKTLSDDYFGAFHDSSWHFFSPVSPTELQFTDL 277

[Close]

BLAST of Carg17748 vs. ExPASy TrEMBL
Match: A0A5A7VEC7 (Protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold446G00470 PE=3 SV=1)

HSP 1 Score: 494.2 bits (1271), Expect = 3.6e-136
Identity = 241/277 (87.00%), Postives = 260/277 (93.86%), Query Frame = 0


Query: 1   MAASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKL 60
           MAASAKT+AIPDQSNNGDWTVVLPRRG+QRKN PKLR +EDQRTWSP+DQANDTIRESKL
Sbjct: 1   MAASAKTVAIPDQSNNGDWTVVLPRRGKQRKNFPKLRNREDQRTWSPTDQANDTIRESKL 60

Query: 61  LHKMEICIKKVEISQFYRTLVGELETMPVLESLNRVLASESKMGMVFYGVGSIENYENPR 120
           L KME+CIKK+E SQFYRTLV ELET+P LESLNRVL SESKMG+V YGVGSIENYENPR
Sbjct: 61  LQKMEMCIKKLESSQFYRTLVEELETVPFLESLNRVLDSESKMGVVIYGVGSIENYENPR 120

Query: 121 LQLSLAILLKRKFSWIGSLEVFDPILSAIECRVIESFGCSVLSVNEQGRRCAQKPTMFFM 180
           LQLSLAILLKRKFSWI SLEVFDPILSA ECR++ESFGCSVLSVNEQGRRCA+KPTMFFM
Sbjct: 121 LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSVNEQGRRCAEKPTMFFM 180

Query: 181 PHCEAELYNNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFS 240
           PHCEAELYNNLLQENW V+LLNH++LFGNSFEIYEQFVSEFKNSPVVDS+ +ILASRKF 
Sbjct: 181 PHCEAELYNNLLQENWKVKLLNHIMLFGNSFEIYEQFVSEFKNSPVVDSSNFILASRKFV 240

Query: 241 REIKIKTLSDEYFGAFHDSSWHFFSPFLPTELQFTDL 278
           REIKIKT+SD+YFGAFHDSSWHFFSP  P EL+F DL
Sbjct: 241 REIKIKTVSDDYFGAFHDSSWHFFSPVSPLELKFIDL 277

[Close]

BLAST of Carg17748 vs. ExPASy TrEMBL
Match: A0A1S3CQQ4 (protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Cucumis melo OX=3656 GN=LOC103503243 PE=3 SV=1)

HSP 1 Score: 494.2 bits (1271), Expect = 3.6e-136
Identity = 241/277 (87.00%), Postives = 260/277 (93.86%), Query Frame = 0


Query: 1   MAASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKL 60
           MAASAKT+AIPDQSNNGDWTVVLPRRG+QRKN PKLR +EDQRTWSP+DQANDTIRESKL
Sbjct: 1   MAASAKTVAIPDQSNNGDWTVVLPRRGKQRKNFPKLRNREDQRTWSPTDQANDTIRESKL 60

Query: 61  LHKMEICIKKVEISQFYRTLVGELETMPVLESLNRVLASESKMGMVFYGVGSIENYENPR 120
           L KME+CIKK+E SQFYRTLV ELET+P LESLNRVL SESKMG+V YGVGSIENYENPR
Sbjct: 61  LQKMEMCIKKLESSQFYRTLVEELETVPFLESLNRVLDSESKMGVVIYGVGSIENYENPR 120

Query: 121 LQLSLAILLKRKFSWIGSLEVFDPILSAIECRVIESFGCSVLSVNEQGRRCAQKPTMFFM 180
           LQLSLAILLKRKFSWI SLEVFDPILSA ECR++ESFGCSVLSVNEQGRRCA+KPTMFFM
Sbjct: 121 LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSVNEQGRRCAEKPTMFFM 180

Query: 181 PHCEAELYNNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFS 240
           PHCEAELYNNLLQENW V+LLNH++LFGNSFEIYEQFVSEFKNSPVVDS+ +ILASRKF 
Sbjct: 181 PHCEAELYNNLLQENWKVKLLNHIMLFGNSFEIYEQFVSEFKNSPVVDSSNFILASRKFV 240

Query: 241 REIKIKTLSDEYFGAFHDSSWHFFSPFLPTELQFTDL 278
           REIKIKT+SD+YFGAFHDSSWHFFSP  P EL+F DL
Sbjct: 241 REIKIKTVSDDYFGAFHDSSWHFFSPVSPLELKFIDL 277

[Close]

BLAST of Carg17748 vs. TAIR 10
Match: AT5G59560.1 (sensitivity to red light reduced protein (SRR1) )

HSP 1 Score: 276.9 bits (707), Expect = 1.7e-74
Identity = 137/267 (51.31%), Postives = 195/267 (73.03%), Query Frame = 0


Query: 10  IPDQSNNGDWTVVLP---RRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKLLHKMEI 69
           + + S++G+W VVLP   R+GR+RK  PK + +E+++ W   D   D  R+++L  KMEI
Sbjct: 5   VKNSSSDGEWKVVLPSKGRQGRRRKPKPKGQAEEEEQPWKSDDLEIDPQRQARLKQKMEI 64

Query: 70  CIKKVEISQFYRTLVGELETMPVLESLNRVLASESKMGMVFYGVGSIENYENPRLQLSLA 129
            +KK+E S FY   + +L++  V   +  VL SE+++ MV YG+GSIE+YE+PR QLS+A
Sbjct: 65  SLKKIESSSFYTAFLEQLKSPEVSNQIRLVLGSETQLQMVMYGIGSIESYESPRFQLSIA 124

Query: 130 ILLKRKFSWIG-SLEVFDPILSAIECRVIESFGCSVLSVNEQGRRCAQKPTMFFMPHCEA 189
           IL+KR+F W+G ++EVFDP+LSA E   +ES GCSVLSVNEQ RR A KPT+FFMPHCEA
Sbjct: 125 ILMKREFDWVGDNIEVFDPVLSATESSYLESLGCSVLSVNEQARREALKPTLFFMPHCEA 184

Query: 190 ELYNNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFSREIKI 249
            LY+NLLQ NW ++ L+ + LFGNSF++YE+ VS   ++ V+ + K I+A+++ + E  I
Sbjct: 185 NLYSNLLQANWRMDRLSKIALFGNSFQMYEEQVS--FDAEVICATKRIIAAQRVTSEFAI 244

Query: 250 KTLSDEYFGAFHDSSWHFFSPFLPTEL 273
           +T SD+YF AFHDSSWHFFS  + +EL
Sbjct: 245 ETESDDYFAAFHDSSWHFFSSGIDSEL 269

[Close]

BLAST of Carg17748 vs. TAIR 10
Match: AT5G59560.2 (sensitivity to red light reduced protein (SRR1) )

HSP 1 Score: 276.9 bits (707), Expect = 1.7e-74
Identity = 137/267 (51.31%), Postives = 195/267 (73.03%), Query Frame = 0


Query: 10  IPDQSNNGDWTVVLP---RRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKLLHKMEI 69
           + + S++G+W VVLP   R+GR+RK  PK + +E+++ W   D   D  R+++L  KMEI
Sbjct: 5   VKNSSSDGEWKVVLPSKGRQGRRRKPKPKGQAEEEEQPWKSDDLEIDPQRQARLKQKMEI 64

Query: 70  CIKKVEISQFYRTLVGELETMPVLESLNRVLASESKMGMVFYGVGSIENYENPRLQLSLA 129
            +KK+E S FY   + +L++  V   +  VL SE+++ MV YG+GSIE+YE+PR QLS+A
Sbjct: 65  SLKKIESSSFYTAFLEQLKSPEVSNQIRLVLGSETQLQMVMYGIGSIESYESPRFQLSIA 124

Query: 130 ILLKRKFSWIG-SLEVFDPILSAIECRVIESFGCSVLSVNEQGRRCAQKPTMFFMPHCEA 189
           IL+KR+F W+G ++EVFDP+LSA E   +ES GCSVLSVNEQ RR A KPT+FFMPHCEA
Sbjct: 125 ILMKREFDWVGDNIEVFDPVLSATESSYLESLGCSVLSVNEQARREALKPTLFFMPHCEA 184

Query: 190 ELYNNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFSREIKI 249
            LY+NLLQ NW ++ L+ + LFGNSF++YE+ VS   ++ V+ + K I+A+++ + E  I
Sbjct: 185 NLYSNLLQANWRMDRLSKIALFGNSFQMYEEQVS--FDAEVICATKRIIAAQRVTSEFAI 244

Query: 250 KTLSDEYFGAFHDSSWHFFSPFLPTEL 273
           +T SD+YF AFHDSSWHFFS  + +EL
Sbjct: 245 ETESDDYFAAFHDSSWHFFSSGIDSEL 269

The following BLAST results are available for this feature:

BLAST of Carg17748 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032652.1	7.1e-155	100.00	Protein SENSITIVITY TO RED LIGHT REDUCED 1, partial [Cucurbita argyrosperma subs...	[more]
KAG6601957.1	3.5e-154	99.64	Protein SENSITIVITY TO RED LIGHT REDUCED 1, partial [Cucurbita argyrosperma subs...	[more]
XP_023553043.1	1.7e-148	96.39	protein SENSITIVITY TO RED LIGHT REDUCED 1-like [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_022964146.1	2.1e-146	96.39	protein SENSITIVITY TO RED LIGHT REDUCED 1-like [Cucurbita moschata] >XP_0229641...	[more]
KAG6579107.1	1.7e-140	90.97	Protein SENSITIVITY TO RED LIGHT REDUCED 1, partial [Cucurbita argyrosperma subs...	[more]

BLAST of Carg17748 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GWZ6	2.4e-73	51.31	Protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
Q8K2M3	1.5e-19	33.80	SRR1-like protein OS=Mus musculus OX=10090 GN=Srrd PE=2 SV=4	[more]
Q9UH36	2.9e-18	37.20	SRR1-like protein OS=Homo sapiens OX=9606 GN=SRRD PE=2 SV=1	[more]
Q9VEB5	1.4e-07	28.43	SRR1-like protein OS=Drosophila melanogaster OX=7227 GN=CG7988 PE=1 SV=1	[more]

BLAST of Carg17748 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HK12	1.0e-146	96.39	protein SENSITIVITY TO RED LIGHT REDUCED 1-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1FGU7	2.4e-140	90.61	protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1JWJ0	3.2e-137	88.81	protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A5A7VEC7	3.6e-136	87.00	Protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3CQQ4	3.6e-136	87.00	protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Cucumis melo OX=3656 GN=LOC1035032...	[more]

BLAST of Carg17748 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59560.1	1.7e-74	51.31	sensitivity to red light reduced protein (SRR1)	[more]
AT5G59560.2	1.7e-74	51.31	sensitivity to red light reduced protein (SRR1)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012942	SRR1-like domain	PFAM	PF07985	SRR1	coord: 105..157 e-value: 6.9E-10 score: 38.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..50
None	No IPR available	PANTHER	PTHR28626:SF3	SRR1-LIKE PROTEIN	coord: 14..265
IPR040044	SRR1-like protein	PANTHER	PTHR28626	SRR1-LIKE PROTEIN	coord: 14..265

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17748-RA	Carg17748-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus