Carg17722 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg17722
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr04: 17228977 .. 17233786 (-)
RNA-Seq Expression	Carg17722
Synteny	Carg17722

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGACCAAGAGATTAGTCGGACTGTTGGCTAAGACATTCTGCGGCACCGACAAGATGGTCACATTGCTCAGAAAGGAAAGGTAAAGGAAATTATCTATCTATTGGTATGAGATTTATGGTTTTTGGTGGGAAATATTTATATATGAAGTCTTAGTAAATGCAATTGTGAAGATGAGTAGATCTTAGTAAATGCAATTGTGGAAAACATTTATATCTATATGAGATCTTAGTATTGCAACACCCAAGTTTTGTGTGATCTAATTTCCTGAACTCAATTTCTGTTATTTATTTTTTTTTTTTTTGAGATATGGTTTCCCCTTATCAAATAAATTTTCGGTTGTTGTCTCGTGAAGGTGGTAAGAACACGTCTTATTGCATTTATTATTTAACTGTTGATGATTCCAAAGCTTGGATTGAAACAAATTTTTTATGTGAAAATTGTCTGTTCATAGTATAGAGAATTCTTCTTCAAATTCACTCACTGCCCAGAATCAATGGACGTTCACCTCACTGCATCTAATTCCATAGCTTGCTAAGAAACAAATTCTCCGAACGATCAACTGCTTCAAAAAAAATTCTATGAAATTTCCTGTTTCACAATCACCTAAGGAAAATCATTTCTACCCATTGAGAAGCGCCTCATGATCTGTAATTGTCAGTTCAAAAGCCCTAAAATCCATTTAAATCCAACCCAAAGTTTAGGTTGGATACAAATTATCATGAGGTCAATGCTTTCAAGATAAAAGAACTAGTTCCTCCACAAGATAGGATGAGTTCAATATTCTTGGCACGTAACTTTTAAGACATGACTGGGAAGGGTTTATGAAGCTAAATTTGAAAGGAAAATTAACAAAAGCTAAAATTTAACTAATCATGATCAATTAAAAACAAGATAATTAGCAAGTCTTTAGATGGCCTTCCAAGGTTTCCAAAATACTTCTCCTTGCATCAATTCTTAAATAAAATGTGAACATGGCTTTGAGGTATTATACCCTAATGGGTTCCTAGGAAGCTAAACCGATTTCAAAGATTTAATGTAGTTTAGAGAGAAGAAATTTCCCTACATCAAGTAGCAGTTAATCTCAATAATCAAAGGGTTTCCGGGTTTACAAAGTGTATCAATCAAAGGGTTTCCGTGTATATTAAACAAGGGGATTACAAAGTGTACATCTCGCACTCTTGCATCATAAATTCTCCCAACAAAATTTCTCTCCTTTCTCTCAAATGTCCTAGATAATTCTTTATACAAACCAAATGATTTATATATCAAAGAACCAAAAGGGTTAGACTACTAACTAAATAAGAATTATAAACAAAATAAATGAGAATATGAACCAAAGGCAAATGTCATCCAAACAAATACAAATGACATTCAAATTTAATATATCTAAACCATTTCGTTGCCTTCAAGATTGACAACAATGATGAGTTCGAAAATCGTCAACAGTCTCAACCAGTGTCTTCTCTTTGCGAGATCTTTGGAGTTGATACACTGATCCCAACAATTCTCAATGGGCTTAGGATCTCCAAGTTTGAGTCGATATGTTGCACCTTTTCCTTCAAGGGCCAAATTTATCTGATTGCATCTTTGCCCTTCTCGAGGCACCACTTCATCTCAAGTCTGCTACCCTTGGTCTCCCCTCAGCAGAAATGTTATATATACCCAACACGTCCTGATGCTAGGTTCAATCCGAGTTGTATTTGAGGCAAGGAGGGTCGCATATTTTAAGTTTGAGGAAGTTATCTATTTATTAGAACTTTTCGATATATATGAAATTGGGTTTACTCTGAAGTACAAAATGATGAAATCGTTCTTATTTGACATTCTTATATGATAACATGATAGAGGGAATACATGAGAGAGAGAAAAAAAAAAAAAAACATTAAAGGAGCAAAGCATATCACATTCTAGGCAGTAGTAGAGTATCTGCCATGAACGAATGAGTAATAGAGCCCCCAAATCAGCAGGAGCAAAGCAGAAGCCATGGAAGCCACAGAATACAAGGTATAAAAGGTAGCTAAGTTGGGTTTATGAGGAATCAAAAGAGCACCCAAAGCACCTAAGAAAGCAAAGGTAATGGACAAAACGAAGGCATCAAAGGCAGAGGAAGGATTGGATAAGCCATCGAAAATCAAACCAACCCCCCCTCCCTCACTTCTTCCAGATAATATCAACAAGATTGAGAGTGTGTTCAAAGACAAATACAAAATGGGCTTCAAAAGTATTGTCAACGGAGGGACGAAAGCATTTTGGTCTGATTTCATCATCTCCTTCATGTTCGTTACATTCAGAGAGGAAGAAGAAGGAATACCTCAGAGCTCATTATTGCTATTTTGCACCATCTTCTTACAACCTTAAGTAGTAGCGTTTAGGAAATTTCCTGGAAATTACGGAAGGGAACAACTTGCTCCCCAAGTCGTTTGAGAAATTTCCCTCAAGGACTAAAGTGGGATGTGGGGCCAAAGGGCCATGATTGTCCTTTTTAAACCAATATATATTTTATATAGATAACTAAACTTTAAAAGCATTTCCACACCAAGTGGTCAAAATTTCCACAAAACCTACTTTCTCTTTTTTAAGAAAAAAAAACTTGTAGGAGAATTCAGTGAAACTTCCCCCCCCTCTATATTCCAGAATTCTCCATGCAGCGTATATAAAAAGGGAACTCCCAGATTGAATGGAACTTAGGGAAACCACTTGAAGAACATTGACCAAATCCTTATTGTTTCCCCCCAATGGATTCAGCCACACAACAAGAAACCTCCCTGGATATGAGTAGTCTTACCTGGGGATGGGGATTATCCACGCCATTAGAATTCCAGTCAATTAACATCAAAATGCATAGCCCTAGGCCTCAACCAGCCAACAGCCCTAGGAATCTTGGGAAGACAATCCTTAATCTCACTTTTCAAGCAATTTTAGCTTTGTCCATCAGTGCTCCCACTCCATCATCTTCCCCACTTCCCACAGTTCTATTTAGAGCTGCCATGTTTATCAGCTTTCAAGTTTCGTTTGCTGGAGTTTTCCTTAAGAATGTATTCCCAAGAATTGCACTTCTCTTGGAAAAACTCGGTGCTCTTTTTCTTGCAATTGGCGTCTGCATATCAGGAGGTCTACTAGTCCCTAAAAACTACGCTTGGATCTGTTGGTTGGCAGGTGGCTGCTCCTGCTTGCTACCCTTTATTATCTCATTCATGTGATTTTGACAGAAGATGCACTACAGAGTCCATGCCCATATGTGTGTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTTTAGTTTAACCTCTTTTACAGTCTCTTAGTCTACAACTTACAATGACATGATAACTCTGCCTGTGTCATGCATCAAGCATCAATTCTTCTACGCAGCCGGTCCCAAGCCCGGAACAAAGGAGGAGGGTGGTGTCATCAGACCATTGGAACTTCAGCGTGTTCTGAATTGTAGCTGTCAGTATTTTCATTTTAGTAGTAGTAATAAAGATGGAAGCGTCGCAATAGATGGGAGTAACCACATATTGCTGAAGCTTAGCCATCACCTAAGGTCTAAAGTCTTGTACTAGACATGTGTGTTGAGTCGTTCAATTAATGGTAGAATGGGCATCTTTATGTTGTTTTATTTACATGAGTCCTACACAAACATACACACGAGAACTACAACAGTGACAATTGAACACCAGCCCAAAACAAGAAAGATTACATAAGAGAATCTCATTTCATAAGATGGAAACCAAATTGAAACACCATAAGAATGGAAACCAGTAAAACAGCGAAGCAATCAGAGAACTTTGAAGACCAGAATGATATAAATCTCCACATCAGTTTCAGACGACAAAGTTTTCATCATTTTGCCTTCTCTTACAGCAAACTCATCAACTCAATACAACAAGCAACACCAATTAATGAGTATATTCTCTCGTAAGATGGGTAAGAATCTAAGCCGACCGGAGTAGATATGATCAACTTTAGCCTCTTACAACGTAAAGATGGTAAGAATCCAGACCCCAAACCGAGGTAACGAGCCTACTGGGGAGAGGTTTCCATAGCCTCCCCAACCGTGGTAACGAGCCTACTGTACTGGGGAGAGGTTTCCATACCCTCCCTAAACCGAGGCAACGATCCCACTGGGGAGAGGTTTCCATTCCCTCTCCAATTGAATTTGGATCTCGTGTGGATACAAAAATGATTTGTTTATCTCTCAAACGGATGCAAAATCTAGCAGAGATACAAACAAAATCTGCATCGATTCAACCAAAATCATAATTTCCCTATGATTCAAATTCATGAGAGACAACAACAAAATCTAACGCCAAGTATCAGGCAACCGTAAGCAGAAAACTTGGAAGGCATTGAATGATACGAGCAAGGCACATCATCTTGAATGGCCAATCAAAGACTGAAATTGGAGTAAAGTAGGAGAGAAGGCCACGAAAATAGAAGAACAGAACACAACGAAAACTCAGATTCTGAAGAGAACCTAGTGATCGTTGATTGTTTCTTTGGCGAAACAGCGTTAAGCTGGAGAAAATCATCCCCAAAACCACAGCACCACAAGTACACCTTTCCCTCGATTTTCCTTGCAACCAAACTGGAATATCCAAGGGGCTGTTTGGTCGGTGCATCAAATCATGCACGAAAACAAAAGCTGAAAAAAGAAATCAAAGCGTCGCATACCAGATGATCGATTTGCAGAGCACAACCATCGAGAGAGGCCCACGGACGAAGTTGCAGCCTAGGTTGGGCTTATTCTGAACCCCTTGAATTAGGGTTACTCTTAGGTGAATATATAGCCGACTCCTCTTTTTTTT

mRNA sequence

ATGTTGACCAAGAGATTAGTCGGACTGTTGGCTAAGACATTCTGCGGCACCGACAAGATGCATCAATTCTTCTACGCAGCCGGTCCCAAGCCCGGAACAAAGGAGGAGGGTGGTGTCATCAGACCATTGGAACTTCAGCGTGTTCTGAATTGTAGCTGTCAGTATTTTCATTTTAGTAGTAGTAATAAAGATGGAAGCGTCGCAATAGATGGGAGTAACCACATATTGCTGAAGCTTAGCCATCACCTAAGGTCTAAAGTCTTGTACTAGACATGTGTGTTGAGTCGTTCAATTAATGGTAGAATGGGCATCTTTATGTTGTTTTATTTACATGAGTCCTACACAAACATACACACGAGAACTACAACAGTGACAATTGAACACCAGCCCAAAACAAGAAAGATTACATAAGAGAATCTCATTTCATAAGATGGAAACCAAATTGAAACACCATAAGAATGGAAACCAGTAAAACAGCGAAGCAATCAGAGAACTTTGAAGACCAGAATGATATAAATCTCCACATCAGTTTCAGACGACAAAGTTTTCATCATTTTGCCTTCTCTTACAGCAAACTCATCAACTCAATACAACAAGCAACACCAATTAATGAGTATATTCTCTCGTAAGATGGGTAAGAATCTAAGCCGACCGGAGTAGATATGATCAACTTTAGCCTCTTACAACGTAAAGATGGTAAGAATCCAGACCCCAAACCGAGGTAACGAGCCTACTGGGGAGAGGTTTCCATAGCCTCCCCAACCGTGGTAACGAGCCTACTGTACTGGGGAGAGGTTTCCATACCCTCCCTAAACCGAGGCAACGATCCCACTGGGGAGAGGTTTCCATTCCCTCTCCAATTGAATTTGGATCTCGTGTGGATACAAAAATGATTTGTTTATCTCTCAAACGGATGCAAAATCTAGCAGAGATACAAACAAAATCTGCATCGATTCAACCAAAATCATAATTTCCCTATGATTCAAATTCATGAGAGACAACAACAAAATCTAACGCCAAGTATCAGGCAACCGTAAGCAGAAAACTTGGAAGGCATTGAATGATACGAGCAAGGCACATCATCTTGAATGGCCAATCAAAGACTGAAATTGGAGTAAAGTAGGAGAGAAGGCCACGAAAATAGAAGAACAGAACACAACGAAAACTCAGATTCTGAAGAGAACCTAGTGATCGTTGATTGTTTCTTTGGCGAAACAGCGTTAAGCTGGAGAAAATCATCCCCAAAACCACAGCACCACAAGTACACCTTTCCCTCGATTTTCCTTGCAACCAAACTGGAATATCCAAGGGGCTGTTTGGTCGGTGCATCAAATCATGCACGAAAACAAAAGCTGAAAAAAGAAATCAAAGCGTCGCATACCAGATGATCGATTTGCAGAGCACAACCATCGAGAGAGGCCCACGGACGAAGTTGCAGCCTAGGTTGGGCTTATTCTGAACCCCTTGAATTAGGGTTACTCTTAGGTGAATATATAGCCGACTCCTCTTTTTTTT

Coding sequence (CDS)

ATGTTGACCAAGAGATTAGTCGGACTGTTGGCTAAGACATTCTGCGGCACCGACAAGATGCATCAATTCTTCTACGCAGCCGGTCCCAAGCCCGGAACAAAGGAGGAGGGTGGTGTCATCAGACCATTGGAACTTCAGCGTGTTCTGAATTGTAGCTGTCAGTATTTTCATTTTAGTAGTAGTAATAAAGATGGAAGCGTCGCAATAGATGGGAGTAACCACATATTGCTGAAGCTTAGCCATCACCTAAGGTCTAAAGTCTTGTACTAG

Protein sequence

MLTKRLVGLLAKTFCGTDKMHQFFYAAGPKPGTKEEGGVIRPLELQRVLNCSCQYFHFSSSNKDGSVAIDGSNHILLKLSHHLRSKVLY

Homology

[Close]

BLAST of Carg17722 vs. NCBI nr
Match: KAG7032626.1 (hypothetical protein SDJN02_06676, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.0 bits (476), Expect = 3.6e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MLTKRLVGLLAKTFCGTDKMHQFFYAAGPKPGTKEEGGVIRPLELQRVLNCSCQYFHFSS 60
          MLTKRLVGLLAKTFCGTDKMHQFFYAAGPKPGTKEEGGVIRPLELQRVLNCSCQYFHFSS
Sbjct: 1  MLTKRLVGLLAKTFCGTDKMHQFFYAAGPKPGTKEEGGVIRPLELQRVLNCSCQYFHFSS 60

Query: 61 SNKDGSVAIDGSNHILLKLSHHLRSKVLY 90
          SNKDGSVAIDGSNHILLKLSHHLRSKVLY
Sbjct: 61 SNKDGSVAIDGSNHILLKLSHHLRSKVLY 89

[Close]

BLAST of Carg17722 vs. NCBI nr
Match: KAG6601930.1 (hypothetical protein SDJN03_07163, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 124.0 bits (310), Expect = 6.4e-25
Identity = 58/60 (96.67%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 27  AGPKPGTKEEGGVIRPLELQRVLNCSCQYFHFSSSNKDGSVAIDGSNHILLKLSHHLRSK 86
           AGPKPGTKEEGGVIRPLELQRVLNCSCQYFHFSSSNKDGSVAIDGSNHILLKLSHHL  K
Sbjct: 126 AGPKPGTKEEGGVIRPLELQRVLNCSCQYFHFSSSNKDGSVAIDGSNHILLKLSHHLSVK 185

The following BLAST results are available for this feature:

BLAST of Carg17722 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032626.1	3.6e-44	100.00	hypothetical protein SDJN02_06676, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6601930.1	6.4e-25	96.67	hypothetical protein SDJN03_07163, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Carg17722 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg17722 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg17722 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17722-RA	Carg17722-RA	mRNA