Carg17599 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg17599
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	PSII 6.1 kDa protein
Location	Carg_Chr12: 10695452 .. 10697003 (-)
RNA-Seq Expression	Carg17599
Synteny	Carg17599

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCACTATCCATCACAACTTTTAAAGGGAACTGAGTGTTAAGAGCCAAACAAACCCTTCCCCTTCCCCTTCGCCACCTCTAGCAGCTTCTCTCGCCGGAAAAAATGGCTTCCACTCTGCTTTCTCACTCCGGGATTACCCTCAAAGGATCACCCAAGCTTCTTCCGCCGCCACTAATGGCAGCTCACAGTGAGTTTCTTCAATTTCAAACACCATTGTCAGTATTATTTTTATTGTTCATCTTACCGTTTTCCGTTTATTAGCTGTTCTTCGATTAATACACGTTAAGGTCTCGAAAACAATTTAGTTTGAATTGTGTCAAAAATATGAAACGGGAAACACTCGCACTCTTCGTTAACACCAATCATAAAGACATTACAAGACACTCTGTAGAAACTACTGGTACTCTGTGCTTTGATCAATGGTAAGGAGATTACAAAACACTCGGTACAAACTACTTGGCACTATATGCGGTAAGAAGATTACAAAACACTCTGTAGAAACTACTTGACACTCTGTGCTTTGAATTTTTTTTGAGATAAAAACGACTAAACAATCTATTCCTAAAATATCTAAATCTTTTTCCGGAGATATCTTTATTCTAAATGAAAAAGCTCACCCCCGAGAAAGCCCAACGATCCATTTATAGGAAATGTTATAACTCAACTCATTGTTCTTCTTTTAACGATGAACTACTCCGGTACAACAAGTTAAAGGGACCTTTACGCTCTGTCTCCAGTGCGTAAGGCCGATCCCCATGTGCTCTAGAGGGAAGACCGGAAAGTTTGTGTTAAGTAGAAAGAAAGTAGGTTTTTGTCTTGTTTAGGCATTTGGTGTCCTACAATGTGTTCGTATAATTATTGGGTTTAACTCTATTGGGCCAGTGATAATAGTTGTTACTCATTATCGAATAACGAAAAGACACAGTTAGTAGAAGATCGAACTATCGACCATTGAACGTGAAATTTTGTAGGATTGCCGGTGGTGCAAAAGATGAAGAAGGGAGGGATTAAGTGCAAGTTGGAAGAGAAGCAAGAAGGAAAGAGGTCAAAAGAAAGCCTGATTTCCGGGACGGTGGCGGCCATGGCGACGACCGTGGTGGCAATGGCGGGTCCGGCGGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGAACAGGGCTGCCTTTTGGTTTAAGCAACAACCTTCTTGGGTGGATTCTGGCAGGGATGTTTGGTTTCATTTGGGCTCTTTATTTTGTTTATGCTTCATCCTTGGAGGAAGATGAAGATTCTGGTTTGTCACTTTGAATCACTCATAACATTTCTTCATCAAAATTTGATTTTGATTTACTAAATTGTTAATAAACAAGCGATTATCGCTATTTTAGTCTCGTTTTTTTTAATGAAACGTTATTCCTCTCGACGACCTTGACCAAAATTAGTAATGAAAATAAAATGTGGGAATCACTCGAACATGTGGGTCAGCTACAAATTAGGGGTGTTCATGTGAATCGAGAACTCGACCAACTTGAACTATGGGAATCGATTTGGGGTGTTGGTTCATGGGTTGAG

mRNA sequence

TCACTATCCATCACAACTTTTAAAGGGAACTGAGTGTTAAGAGCCAAACAAACCCTTCCCCTTCCCCTTCGCCACCTCTAGCAGCTTCTCTCGCCGGAAAAAATGGCTTCCACTCTGCTTTCTCACTCCGGGATTACCCTCAAAGGATCACCCAAGCTTCTTCCGCCGCCACTAATGGCAGCTCACAGATTGCCGGTGGTGCAAAAGATGAAGAAGGGAGGGATTAAGTGCAAGTTGGAAGAGAAGCAAGAAGGAAAGAGGTCAAAAGAAAGCCTGATTTCCGGGACGGTGGCGGCCATGGCGACGACCGTGGTGGCAATGGCGGGTCCGGCGGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGAACAGGGCTGCCTTTTGGTTTAAGCAACAACCTTCTTGGGTGGATTCTGGCAGGGATGTTTGGTTTCATTTGGGCTCTTTATTTTGTTTATGCTTCATCCTTGGAGGAAGATGAAGATTCTGGTTTGTCACTTTGAATCACTCATAACATTTCTTCATCAAAATTTGATTTTGATTTACTAAATTGTTAATAAACAAGCGATTATCGCTATTTTAGTCTCGTTTTTTTTAATGAAACGTTATTCCTCTCGACGACCTTGACCAAAATTAGTAATGAAAATAAAATGTGGGAATCACTCGAACATGTGGGTCAGCTACAAATTAGGGGTGTTCATGTGAATCGAGAACTCGACCAACTTGAACTATGGGAATCGATTTGGGGTGTTGGTTCATGGGTTGAG

Coding sequence (CDS)

ATGGCTTCCACTCTGCTTTCTCACTCCGGGATTACCCTCAAAGGATCACCCAAGCTTCTTCCGCCGCCACTAATGGCAGCTCACAGATTGCCGGTGGTGCAAAAGATGAAGAAGGGAGGGATTAAGTGCAAGTTGGAAGAGAAGCAAGAAGGAAAGAGGTCAAAAGAAAGCCTGATTTCCGGGACGGTGGCGGCCATGGCGACGACCGTGGTGGCAATGGCGGGTCCGGCGGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGAACAGGGCTGCCTTTTGGTTTAAGCAACAACCTTCTTGGGTGGATTCTGGCAGGGATGTTTGGTTTCATTTGGGCTCTTTATTTTGTTTATGCTTCATCCTTGGAGGAAGATGAAGATTCTGGTTTGTCACTTTGA

Protein sequence

MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLISGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSGLSL

Homology

[Close]

BLAST of Carg17599 vs. NCBI nr
Match: XP_022937622.1 (photosystem II reaction center W protein, chloroplastic-like [Cucurbita moschata] >KAG6586311.1 Photosystem II reaction center W protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021160.1 Photosystem II reaction center W protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 255.0 bits (650), Expect = 3.6e-64
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLIS 60
           MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLIS
Sbjct: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLIS 60

Query: 61  GTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYA 120
           GTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYA
Sbjct: 61  GTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYA 120

Query: 121 SSLEEDEDSGLSL 134
           SSLEEDEDSGLSL
Sbjct: 121 SSLEEDEDSGLSL 133

[Close]

BLAST of Carg17599 vs. NCBI nr
Match: XP_023521133.1 (photosystem II reaction center W protein, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023537055.1 photosystem II reaction center W protein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 248.4 bits (633), Expect = 3.4e-62
Identity = 129/133 (96.99%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLIS 60
           MASTLLSHSGITLKGSPKLLPPPLMAAHRL VVQKMKKGGIKC+LEEKQEGKRSKES+IS
Sbjct: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHRLSVVQKMKKGGIKCRLEEKQEGKRSKESMIS 60

Query: 61  GTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYA 120
           GTVAA+ATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYA
Sbjct: 61  GTVAAVATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYA 120

Query: 121 SSLEEDEDSGLSL 134
           SSLEEDEDSGLSL
Sbjct: 121 SSLEEDEDSGLSL 133

[Close]

BLAST of Carg17599 vs. NCBI nr
Match: XP_022966002.1 (photosystem II reaction center W protein, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 240.4 bits (612), Expect = 9.2e-60
Identity = 126/133 (94.74%), Postives = 129/133 (96.99%), Query Frame = 0


Query: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLIS 60
           MASTLLSHSGITLKGSPKLLPPPLMAAHRL VVQK KKGGIKC+LEEKQE K SKES+IS
Sbjct: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHRLSVVQKRKKGGIKCRLEEKQEVKSSKESMIS 60

Query: 61  GTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYA 120
           GTVAA+ATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYA
Sbjct: 61  GTVAAVATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYA 120

Query: 121 SSLEEDEDSGLSL 134
           SSLEEDEDSGLSL
Sbjct: 121 SSLEEDEDSGLSL 133

[Close]

BLAST of Carg17599 vs. NCBI nr
Match: XP_038890119.1 (photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 208.0 bits (528), Expect = 5.0e-50
Identity = 106/133 (79.70%), Postives = 121/133 (90.98%), Query Frame = 0


Query: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLIS 60
           MASTLLSHS + LKGS K+LP P +AAHRLP++QKMKKGGIKC++EEK EGK+S+ESL+S
Sbjct: 1   MASTLLSHSRLLLKGSSKVLPSPPVAAHRLPMLQKMKKGGIKCRVEEKPEGKKSEESLVS 60

Query: 61  GTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYA 120
           GT+AA+A   +A AGPAVALVDERLSTEGTGLPFGLSNNLLGWILAG+F  IWALYFVYA
Sbjct: 61  GTMAAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFALIWALYFVYA 120

Query: 121 SSLEEDEDSGLSL 134
           SSL+EDEDSGLSL
Sbjct: 121 SSLDEDEDSGLSL 133

[Close]

BLAST of Carg17599 vs. NCBI nr
Match: XP_008456049.1 (PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform X2 [Cucumis melo])

HSP 1 Score: 199.5 bits (506), Expect = 1.8e-47
Identity = 104/133 (78.20%), Postives = 115/133 (86.47%), Query Frame = 0


Query: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLIS 60
           MASTLL HS + LKGS KLLP   MAA RLP +QKMK G IKCK+EEK EGK+S+ES++ 
Sbjct: 1   MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKKSEESMVP 60

Query: 61  GTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYA 120
           GTVAA+A   +A AGPAVALVDER+STEGTGLPFGLSNNLLGWILAGMFG IWALYFVYA
Sbjct: 61  GTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYA 120

Query: 121 SSLEEDEDSGLSL 134
           SSL+EDEDSGLSL
Sbjct: 121 SSLDEDEDSGLSL 133

[Close]

BLAST of Carg17599 vs. ExPASy Swiss-Prot
Match: Q39194 (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBW PE=1 SV=2)

HSP 1 Score: 119.4 bits (298), Expect = 3.1e-26
Identity = 75/139 (53.96%), Postives = 92/139 (66.19%), Query Frame = 0


Query: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHR----LPVVQKMKKGGIKCKLEEKQEGKRSKE 60
           MAS   S S ++    P LL  P +A       LP + K KKGG++C +E KQ       
Sbjct: 1   MASFTASASTVS-AARPALLLKPTVAISAPVLGLPPMGK-KKGGVRCSMETKQ----GNV 60

Query: 61  SLISGTVAAMATTVV--AMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWA 120
           S++   V+A AT  +   M+ PA+ALVDER+STEGTGLPFGLSNNLLGWIL G+FG IW 
Sbjct: 61  SVMGAGVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWT 120

Query: 121 LYFVYASSLEEDEDSGLSL 134
            +FVY SSLEEDE+SGLSL
Sbjct: 121 FFFVYTSSLEEDEESGLSL 133

[Close]

BLAST of Carg17599 vs. ExPASy Swiss-Prot
Match: Q41387 (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea OX=3562 GN=psbW PE=1 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 5.5e-23
Identity = 64/138 (46.38%), Postives = 87/138 (63.04%), Query Frame = 0


Query: 3   STLLSHSGITLKGSPKLLPPPLMAAHRLPVV---QKMKKGGIKCKLEEK----QEGKRSK 62
           +T+ + S  +L     L+    +     P++      K+  + C +E K    +    + 
Sbjct: 2   ATITASSSASLVARASLVHNSRVGVSSSPILGLPSMTKRSKVTCSIENKPSTTETTTTTN 61

Query: 63  ESLISGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWAL 122
           +S+ +  +AA A   +  + PA+ALVDER+STEGTGLPFGLSNNLLGWIL G+FG IWAL
Sbjct: 62  KSMGASLLAAAAAATI--SNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWAL 121

Query: 123 YFVYASSLEEDEDSGLSL 134
           YFVYAS LEEDE+SGLSL
Sbjct: 122 YFVYASGLEEDEESGLSL 137

[Close]

BLAST of Carg17599 vs. ExPASy Swiss-Prot
Match: Q5ZBY9 (Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PSBW PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-18
Identity = 50/101 (49.50%), Postives = 66/101 (65.35%), Query Frame = 0


Query: 30  LPVVQKMKKGGIKCKLEEKQEGKRSKESLISGTVAAMATTVVAMAGPAVALVDERLSTEG 89
           LP ++  +   ++C   ++     +       ++ AMA T    A PA+ALVDER+STEG
Sbjct: 24  LPQMRARRSERVRCNYSKEAATPAAAVKGAGASLLAMAAT----AAPAMALVDERMSTEG 83

Query: 90  TGLPFGLSNNLLGWILAGMFGFIWALYFVYASSLEEDEDSG 131
           TGL  GLSNNLLGWIL G+FG IW+LY +Y S LEEDE+SG
Sbjct: 84  TGLSLGLSNNLLGWILLGVFGLIWSLYTIYTSDLEEDEESG 120

[Close]

BLAST of Carg17599 vs. ExPASy Swiss-Prot
Match: Q9SPI9 (Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=psbW PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-10
Identity = 38/95 (40.00%), Postives = 57/95 (60.00%), Query Frame = 0


Query: 41  IKCKLEEKQEGKRSKESLISGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNL 100
           + CK    +     K +++S   A +A      A PA ALVDER++ +GTG PFG+++ +
Sbjct: 27  VVCKATTVRSEVAKKVAMLSTLPATLA------AHPAFALVDERMNGDGTGRPFGVNDPV 86

Query: 101 LGWILAGMFGFIWALYFVYASSLE--EDEDSGLSL 134
           LGW+L G+FG +WA++F+    L   ED D GL L
Sbjct: 87  LGWVLLGVFGTMWAIWFIGQKDLGDFEDADDGLKL 115

[Close]

BLAST of Carg17599 vs. ExPASy TrEMBL
Match: A0A6J1FBR0 (PSII 6.1 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111443974 PE=3 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 1.7e-64
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLIS 60
           MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLIS
Sbjct: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLIS 60

Query: 61  GTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYA 120
           GTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYA
Sbjct: 61  GTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYA 120

Query: 121 SSLEEDEDSGLSL 134
           SSLEEDEDSGLSL
Sbjct: 121 SSLEEDEDSGLSL 133

[Close]

BLAST of Carg17599 vs. ExPASy TrEMBL
Match: A0A6J1HLU7 (PSII 6.1 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111465720 PE=3 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 4.4e-60
Identity = 126/133 (94.74%), Postives = 129/133 (96.99%), Query Frame = 0


Query: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLIS 60
           MASTLLSHSGITLKGSPKLLPPPLMAAHRL VVQK KKGGIKC+LEEKQE K SKES+IS
Sbjct: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHRLSVVQKRKKGGIKCRLEEKQEVKSSKESMIS 60

Query: 61  GTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYA 120
           GTVAA+ATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYA
Sbjct: 61  GTVAAVATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYA 120

Query: 121 SSLEEDEDSGLSL 134
           SSLEEDEDSGLSL
Sbjct: 121 SSLEEDEDSGLSL 133

[Close]

BLAST of Carg17599 vs. ExPASy TrEMBL
Match: A0A1S3C2B0 (PSII 6.1 kDa protein OS=Cucumis melo OX=3656 GN=LOC103496095 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 8.7e-48
Identity = 104/133 (78.20%), Postives = 115/133 (86.47%), Query Frame = 0


Query: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLIS 60
           MASTLL HS + LKGS KLLP   MAA RLP +QKMK G IKCK+EEK EGK+S+ES++ 
Sbjct: 1   MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKKSEESMVP 60

Query: 61  GTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYA 120
           GTVAA+A   +A AGPAVALVDER+STEGTGLPFGLSNNLLGWILAGMFG IWALYFVYA
Sbjct: 61  GTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYA 120

Query: 121 SSLEEDEDSGLSL 134
           SSL+EDEDSGLSL
Sbjct: 121 SSLDEDEDSGLSL 133

[Close]

BLAST of Carg17599 vs. ExPASy TrEMBL
Match: A0A0A0LJA2 (PSII 6.1 kDa protein OS=Cucumis sativus OX=3659 GN=Csa_2G010330 PE=3 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 3.7e-46
Identity = 103/134 (76.87%), Postives = 114/134 (85.07%), Query Frame = 0


Query: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKR-SKESLI 60
           MASTLL HS + LKGS KLL  P MAAHRLP +QKMKKGGIKC +EEK EGK+ S+ES++
Sbjct: 1   MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMV 60

Query: 61  SGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVY 120
            GTV A+A   +A AGPAVALVDERLSTEGTGLPFGLSNNLLGWILA +F  IWALYFVY
Sbjct: 61  PGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVY 120

Query: 121 ASSLEEDEDSGLSL 134
           ASSL+EDEDSGLSL
Sbjct: 121 ASSLDEDEDSGLSL 134

[Close]

BLAST of Carg17599 vs. ExPASy TrEMBL
Match: A0A6J1CNY5 (PSII 6.1 kDa protein OS=Momordica charantia OX=3673 GN=LOC111013009 PE=3 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 3.7e-46
Identity = 104/133 (78.20%), Postives = 113/133 (84.96%), Query Frame = 0


Query: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLIS 60
           MASTLLSHSG+TLKGSPKL P P MAA RL +V KMKKGGIKCK+EE+ E K S ES +S
Sbjct: 1   MASTLLSHSGLTLKGSPKLHPLPAMAAPRLLMVPKMKKGGIKCKVEERPECKSSGESTVS 60

Query: 61  GTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYA 120
            T+AA+   VVA AGPA ALVDERLSTEGTGLPFGLSNNLL WILAG+F  IWALYFVYA
Sbjct: 61  VTMAAVVAAVVAAAGPAAALVDERLSTEGTGLPFGLSNNLLAWILAGVFALIWALYFVYA 120

Query: 121 SSLEEDEDSGLSL 134
           SSL+EDEDSGLSL
Sbjct: 121 SSLDEDEDSGLSL 133

[Close]

BLAST of Carg17599 vs. TAIR 10
Match: AT2G30570.1 (photosystem II reaction center W )

HSP 1 Score: 119.4 bits (298), Expect = 2.2e-27
Identity = 75/139 (53.96%), Postives = 92/139 (66.19%), Query Frame = 0


Query: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHR----LPVVQKMKKGGIKCKLEEKQEGKRSKE 60
           MAS   S S ++    P LL  P +A       LP + K KKGG++C +E KQ       
Sbjct: 1   MASFTASASTVS-AARPALLLKPTVAISAPVLGLPPMGK-KKGGVRCSMETKQ----GNV 60

Query: 61  SLISGTVAAMATTVV--AMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWA 120
           S++   V+A AT  +   M+ PA+ALVDER+STEGTGLPFGLSNNLLGWIL G+FG IW 
Sbjct: 61  SVMGAGVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWT 120

Query: 121 LYFVYASSLEEDEDSGLSL 134
            +FVY SSLEEDE+SGLSL
Sbjct: 121 FFFVYTSSLEEDEESGLSL 133

The following BLAST results are available for this feature:

BLAST of Carg17599 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937622.1	3.6e-64	100.00	photosystem II reaction center W protein, chloroplastic-like [Cucurbita moschata...	[more]
XP_023521133.1	3.4e-62	96.99	photosystem II reaction center W protein, chloroplastic-like [Cucurbita pepo sub...	[more]
XP_022966002.1	9.2e-60	94.74	photosystem II reaction center W protein, chloroplastic-like [Cucurbita maxima]	[more]
XP_038890119.1	5.0e-50	79.70	photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]	[more]
XP_008456049.1	1.8e-47	78.20	PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform ...	[more]

BLAST of Carg17599 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39194	3.1e-26	53.96	Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana ...	[more]
Q41387	5.5e-23	46.38	Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea OX=...	[more]
Q5ZBY9	1.1e-18	49.50	Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. j...	[more]
Q9SPI9	1.4e-10	40.00	Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhar...	[more]

BLAST of Carg17599 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FBR0	1.7e-64	100.00	PSII 6.1 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111443974 PE=3 SV=1	[more]
A0A6J1HLU7	4.4e-60	94.74	PSII 6.1 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111465720 PE=3 SV=1	[more]
A0A1S3C2B0	8.7e-48	78.20	PSII 6.1 kDa protein OS=Cucumis melo OX=3656 GN=LOC103496095 PE=3 SV=1	[more]
A0A0A0LJA2	3.7e-46	76.87	PSII 6.1 kDa protein OS=Cucumis sativus OX=3659 GN=Csa_2G010330 PE=3 SV=1	[more]
A0A6J1CNY5	3.7e-46	78.20	PSII 6.1 kDa protein OS=Momordica charantia OX=3673 GN=LOC111013009 PE=3 SV=1	[more]

BLAST of Carg17599 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30570.1	2.2e-27	53.96	photosystem II reaction center W	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009806	Photosystem II PsbW, class 2	PFAM	PF07123	PsbW	coord: 29..133 e-value: 5.0E-42 score: 143.1
IPR009806	Photosystem II PsbW, class 2	PANTHER	PTHR34552	PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC	coord: 2..133
None	No IPR available	PANTHER	PTHR34552:SF5	PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC-LIKE	coord: 2..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17599-RA	Carg17599-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042549	photosystem II stabilization
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009507	chloroplast