Carg17586 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg17586
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr12: 10600476 .. 10601932 (+)
RNA-Seq ExpressionCarg17586
SyntenyCarg17586
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATCATCACTTTCTTTTGTTTCGGTCCCGTTAAATCTACCGTTAGTCGATATTGTTTTATCTGGGCTTTTCCTTTTGAGCATCCCCTCAAATCGATGTGGGATCTCACAATCCACCCCATTTCGTGACCCAGCGTTTTTATTGACACTCGTTCCCTTCTCCAATCGATATGGGACCCCTAATCCACCCCCTTTGGACCCAAACGTCCTTATAGACACACCGCCTCGTGTCCACCCCCTTTGGGGCTCAGCCTTCTCCCTAGCACACCACCTCGTGTCTGACTCTAATACCATTTGTAACACCCAAAACCCACCACTAGCAGATATTGTTCTCTTTGGACTTCCATCAGGATTTTGTAACGCATATGCTAGGAAGAGGTTTCCACACCCTTATAAAAGATGCTTCGTTCTTTTCCCCAACCGAGTTAGGATCTCACATCAGTTAGGAAGAAGAATGAAACATGTTTTATAAGGACGTGGAAACCTCTCCACCGTAGACCCATTTTAAAAGGAAAAGCCTAAAAAGTACAATACTACTAAGAATGAACTTGAAGAGCTACATTAATTAGTTGAACTATACTCAAGTCGATAAAGCTGAAATATTAAAGACAATCACGAGAGGTGAGTGGAGTAGAAGCTCCTACTCCTCTTTGGTGTCTCCAAAATGGCCACTTTCATAGTCTCTTTCCACAAGTGTATTGATTGATTCATCCTCACCCCATGAGCTCTACCGCCCACCTCTCTCACCCGCTTTCTCTAAGTCTATTCCATGATTTGGTTTGCTCTCAGAAACCACATTATTTGAGATTTGACCCACCATCCCCCAAAATCTCTCCTCTCTAAGCCCCCTTTTCTTCCCTTTCTCTTTCACTTTGACCCATCATTCCCACCTCTCAAGAATTCCAAGTAAACCCATTAAATACTTTTGCTTTAGATTCATACAGTATTCTCCCCTTCTCCTCTCTCTAAAACACTCCCATTTTGGTTCTCTCTCCAGGATTTTGTCTTCTAGTGTCTTCTTTGTTTCATTTGGGGTTACTGCTAAAGTTTCCAACAATGGAGAAAGCCCTTCACTATCTTCTTCCCCTTCCCCTTCAGCTTCTCTTTGTCTTCCTTTTGCTTCGAAAACGGTGTCGTTCCTTGTCTCCTCTGTAGCTACCTCTCCTAACCCTGTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTACATTTGCTTGGATCCACATTTCTACTTCCACTTTCAGGTGCCTCTCTCTTTCCCTTTTTTCTTTGCTGCATTCGATCTTTTTGGGGTTTTTTTGTGATGAACTGAGCATTTTGCACTGTTCTTCTTTGTGGGTTCTTAAGATTTTGCAATGTTCTTTGTGGGTTTTTAAGATTTTGCAGTGTTCTTATTGAAATGGACAGTGTTCTTTGTGGGTTTTTCAGATTTTGCAGTGTTCTTCTTGA

mRNA sequence

ATGAAATCATCACTTTCTTTTGTTTCGGTCCCGTTAAATCTACCGTTAGTCGATATTGTTTTATCTGGGCTTTTCCTTTTGAGCATCCCCTCAAATCGATGTGGGATCTCACAATCCACCCCATTTCGTGACCCAGCGTTTTTATTGACACTCGTTCCCTTCTCCAATCGATATGGGACCCCTAATCCACCCCCTTTGGACCCAAACGTCCTTATAGACACACCGCCTCGTGTCCACCCCCTTTGGGGCTCAGCCTTCTCCCTAGCACACCACCTCGTGTCTGACTCTAATACCATTTGTAACACCCAAAACCCACCACTAGCAGATATTGTTCTCTTTGGACTTCCATCAGGATTTTGTAACGCATATGCTAGGAAGAGGATTTTGTCTTCTAGTGTCTTCTTTGTTTCATTTGGGGTTACTGCTAAAGTTTCCAACAATGGAGAAAGCCCTTCACTATCTTCTTCCCCTTCCCCTTCAGCTTCTCTTTGTCTTCCTTTTGCTTCGAAAACGGTGTCGTTCCTTGTCTCCTCTGTAGCTACCTCTCCTAACCCTGTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTACATTTGCTTGGATCCACATTTCTACTTCCACTTTCAGATTTTGCAGTGTTCTTCTTGA

Coding sequence (CDS)

ATGAAATCATCACTTTCTTTTGTTTCGGTCCCGTTAAATCTACCGTTAGTCGATATTGTTTTATCTGGGCTTTTCCTTTTGAGCATCCCCTCAAATCGATGTGGGATCTCACAATCCACCCCATTTCGTGACCCAGCGTTTTTATTGACACTCGTTCCCTTCTCCAATCGATATGGGACCCCTAATCCACCCCCTTTGGACCCAAACGTCCTTATAGACACACCGCCTCGTGTCCACCCCCTTTGGGGCTCAGCCTTCTCCCTAGCACACCACCTCGTGTCTGACTCTAATACCATTTGTAACACCCAAAACCCACCACTAGCAGATATTGTTCTCTTTGGACTTCCATCAGGATTTTGTAACGCATATGCTAGGAAGAGGATTTTGTCTTCTAGTGTCTTCTTTGTTTCATTTGGGGTTACTGCTAAAGTTTCCAACAATGGAGAAAGCCCTTCACTATCTTCTTCCCCTTCCCCTTCAGCTTCTCTTTGTCTTCCTTTTGCTTCGAAAACGGTGTCGTTCCTTGTCTCCTCTGTAGCTACCTCTCCTAACCCTGTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTACATTTGCTTGGATCCACATTTCTACTTCCACTTTCAGATTTTGCAGTGTTCTTCTTGA

Protein sequence

MKSSLSFVSVPLNLPLVDIVLSGLFLLSIPSNRCGISQSTPFRDPAFLLTLVPFSNRYGTPNPPPLDPNVLIDTPPRVHPLWGSAFSLAHHLVSDSNTICNTQNPPLADIVLFGLPSGFCNAYARKRILSSSVFFVSFGVTAKVSNNGESPSLSSSPSPSASLCLPFASKTVSFLVSSVATSPNPVFFFFFFFFFFFFYICLDPHFYFHFQILQCSS
Homology
[Close]
BLAST of Carg17586 vs. NCBI nr
Match: KAG7021147.1 (hypothetical protein SDJN02_17835, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 423.7 bits (1088), Expect = 9.6e-115
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0 

Query: 1   MKSSLSFVSVPLNLPLVDIVLSGLFLLSIPSNRCGISQSTPFRDPAFLLTLVPFSNRYGT 60
           MKSSLSFVSVPLNLPLVDIVLSGLFLLSIPSNRCGISQSTPFRDPAFLLTLVPFSNRYGT
Sbjct: 1   MKSSLSFVSVPLNLPLVDIVLSGLFLLSIPSNRCGISQSTPFRDPAFLLTLVPFSNRYGT 60

Query: 61  PNPPPLDPNVLIDTPPRVHPLWGSAFSLAHHLVSDSNTICNTQNPPLADIVLFGLPSGFC 120
           PNPPPLDPNVLIDTPPRVHPLWGSAFSLAHHLVSDSNTICNTQNPPLADIVLFGLPSGFC
Sbjct: 61  PNPPPLDPNVLIDTPPRVHPLWGSAFSLAHHLVSDSNTICNTQNPPLADIVLFGLPSGFC 120

Query: 121 NAYARKRILSSSVFFVSFGVTAKVSNNGESPSLSSSPSPSASLCLPFASKTVSFLVSSVA 180
           NAYARKRILSSSVFFVSFGVTAKVSNNGESPSLSSSPSPSASLCLPFASKTVSFLVSSVA
Sbjct: 121 NAYARKRILSSSVFFVSFGVTAKVSNNGESPSLSSSPSPSASLCLPFASKTVSFLVSSVA 180

Query: 181 TSPNPVFFFFFFFFFFFFYICLDPHFYFHFQILQCSS 218
           TSPNPVFFFFFFFFFFFFYICLDPHFYFHFQILQCSS
Sbjct: 181 TSPNPVFFFFFFFFFFFFYICLDPHFYFHFQILQCSS 217

[Close]
BLAST of Carg17586 vs. NCBI nr
Match: KAG6586299.1 (Serine/threonine-protein kinase Nek2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 146.4 bits (368), Expect = 2.9e-31
Identity = 83/85 (97.65%), Postives = 83/85 (97.65%), Query Frame = 0 

Query: 127 RILSSSVFFVSFGVTAKVSNNGESPSLSSSPSPSASLCLPFASKTVSFLVSSVATSPNPV 186
           RILSSSVFFVSFGVTAKVSNNGESPSLSSSPSPSASLCLPFASKTVSFLVSSVATSPNPV
Sbjct: 37  RILSSSVFFVSFGVTAKVSNNGESPSLSSSPSPSASLCLPFASKTVSFLVSSVATSPNPV 96

Query: 187 FFFFFFFFFFFFYICLDPHFYFHFQ 212
             FFFFFFFFFFYICLDPHFYFHFQ
Sbjct: 97  --FFFFFFFFFFYICLDPHFYFHFQ 119

[Close]
BLAST of Carg17586 vs. NCBI nr
Match: KAG7016581.1 (NAC domain-containing protein 86, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 76.3 bits (186), Expect = 3.7e-10
Identity = 41/75 (54.67%), Postives = 50/75 (66.67%), Query Frame = 0 

Query: 43  RDPAFLLTLVPFSNRYGT-PNPPPLDPNVLIDTPPRVHPLWGSAFSLAHHLVSDSNTI-C 102
           R P + LTL P SNR GT P   P   +VL  TPPRV+P+ G+   LAH  +S S+TI C
Sbjct: 539 RGPTYPLTLFPSSNRCGTAPKSIPFGTSVLPGTPPRVYPIRGTVRKLAHRSMSGSDTIWC 598

Query: 103 NTQNPPLADIVLFGL 116
           N  +PPLADI+LFGL
Sbjct: 599 NAPDPPLADIILFGL 613

[Close]
BLAST of Carg17586 vs. NCBI nr
Match: KAG7030105.1 (putative receptor-like protein kinase [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 74.3 bits (181), Expect = 1.4e-09
Identity = 46/95 (48.42%), Postives = 56/95 (58.95%), Query Frame = 0 

Query: 43  RDPAFLLTLVPFSNRYGTP-------NPPPLDPNVLIDTPPRVHPLWGSAFSLAHHLVSD 102
           + PA  L LVPFSNR GTP           L  + L+ TP R     G+ FSLAH  VSD
Sbjct: 266 KGPASSLALVPFSNRCGTPAKSTPLWGAASLLAHYLVSTPLR-----GTVFSLAHRPVSD 325

Query: 103 SNTICNTQNPPLADIVLFGL-PSGFCNAYARKRIL 130
            +TICN+ +PPLADIVLFGL  SGF   +  + +L
Sbjct: 326 FDTICNSPSPPLADIVLFGLFLSGFLQGFKTRLML 355

[Close]
BLAST of Carg17586 vs. NCBI nr
Match: KAG7016972.1 (hypothetical protein SDJN02_22083, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 72.4 bits (176), Expect = 5.4e-09
Identity = 40/80 (50.00%), Postives = 49/80 (61.25%), Query Frame = 0 

Query: 36  ISQSTPFRDPAFLLTLVPFSNRYGTPNPPPLDPNVLIDTPPRVHPLWGSAFSLAHHLVSD 95
           +SQSTP    + L ++      +  P   P  P+VL  TPP VHP  GS  SLAH  V  
Sbjct: 63  LSQSTPICTSSLLQSM------WDPPTHSPSGPSVLAGTPPCVHPTQGSVSSLAHCHVFG 122

Query: 96  SNTICNTQNPPLADIVLFGL 116
           S+TICN+ +PPLADIVLFGL
Sbjct: 123 SDTICNSPSPPLADIVLFGL 136

The following BLAST results are available for this feature:
BLAST of Carg17586 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7021147.19.6e-115100.00hypothetical protein SDJN02_17835, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6586299.12.9e-3197.65Serine/threonine-protein kinase Nek2, partial [Cucurbita argyrosperma subsp. sor... [more]
KAG7016581.13.7e-1054.67NAC domain-containing protein 86, partial [Cucurbita argyrosperma subsp. argyros... [more]
KAG7030105.11.4e-0948.42putative receptor-like protein kinase [Cucurbita argyrosperma subsp. argyrosperm... [more]
KAG7016972.15.4e-0950.00hypothetical protein SDJN02_22083, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg17586 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg17586 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg17586 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17586-RACarg17586-RAmRNA