Carg17585 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg17585
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr12: 10589905 .. 10590585 (+)
RNA-Seq ExpressionCarg17585
SyntenyCarg17585
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAATTTGACAAAAGCCGAGCCTCCCGTGGAGGCAAGTGAAGTTGGTGAGGTTTATGCTCGCTGTCTCGGTCATGCTCGTCCAGAGCGTGTTGCCCATGACTGCATGCCCATGCCAAGCCAAACCCTTTATGTTTTCCATGTGTGTATGATGTTTTCCTTGATCTGTTGCGGAAAGATTGTCAATTTGTTCCTAGGGCATCTTCAAAAATGTACTTATATGGGGTGATTATGTACTAGTTTGTCAACTTCATCTCTAATGCTGCGATACGTTTTATGTATGGGGGATATGACTAGTGTTGTCAATTCTCTCTCTCGCCTTACCTCGATATGTTATATTGTCAGGTATATGTTTCGTTGTTCAAACCTTCTCTCTATCCTGATAGTTATTATGGGCAGAGTCTAAGCTGTCTGTTCTTGTTGTTTTGGGGTTGGCCTTTTTTTGGGATTACGTAATATTCCGCTATATTTAGATACTTTAATTTCAATTTTCTCAATTAACTTTGTTGGTTCAAAAAACTCTCTTGTCGATAATTCTTCTCGGAGGCTCGCCGGGGGTTTTTTCTTATTGAAACTTTTCTTCTTGTTGAGATTTTCTGCGGGGGCTTAGGAACGCGCGGAGCATACGTCGGGTCTTGGTGGCCGGTATAGCGACGGGCAAGAGACGAATAGTGCTTAG

mRNA sequence

ATGAAGAATTTGACAAAAGCCGAGCCTCCCGTGGAGGCAAGTGAAGTTGGTGAGGTTTATGCTCGCTGTCTCGGTCATGCTCGTCCAGAGCGTGTTGCCCATGACTGCATGCCCATGCCAAGCCAAACCCTTTATGTTTTCCATGAACGCGCGGAGCATACGTCGGGTCTTGGTGGCCGGTATAGCGACGGGCAAGAGACGAATAGTGCTTAG

Coding sequence (CDS)

ATGAAGAATTTGACAAAAGCCGAGCCTCCCGTGGAGGCAAGTGAAGTTGGTGAGGTTTATGCTCGCTGTCTCGGTCATGCTCGTCCAGAGCGTGTTGCCCATGACTGCATGCCCATGCCAAGCCAAACCCTTTATGTTTTCCATGAACGCGCGGAGCATACGTCGGGTCTTGGTGGCCGGTATAGCGACGGGCAAGAGACGAATAGTGCTTAG

Protein sequence

MKNLTKAEPPVEASEVGEVYARCLGHARPERVAHDCMPMPSQTLYVFHERAEHTSGLGGRYSDGQETNSA
Homology
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BLAST of Carg17585 vs. NCBI nr
Match: KAG7021146.1 (hypothetical protein SDJN02_17834, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.1 bits (375), Expect = 1.5e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MKNLTKAEPPVEASEVGEVYARCLGHARPERVAHDCMPMPSQTLYVFHERAEHTSGLGGR 60
          MKNLTKAEPPVEASEVGEVYARCLGHARPERVAHDCMPMPSQTLYVFHERAEHTSGLGGR
Sbjct: 1  MKNLTKAEPPVEASEVGEVYARCLGHARPERVAHDCMPMPSQTLYVFHERAEHTSGLGGR 60

Query: 61 YSDGQETNSA 71
          YSDGQETNSA
Sbjct: 61 YSDGQETNSA 70

The following BLAST results are available for this feature:
BLAST of Carg17585 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7021146.11.5e-32100.00hypothetical protein SDJN02_17834, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg17585 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg17585 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg17585 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17585-RACarg17585-RAmRNA