Carg17568 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg17568
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionvesicle-associated protein 2-2-like
LocationCarg_Chr12: 10439936 .. 10441104 (-)
RNA-Seq ExpressionCarg17568
SyntenyCarg17568
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTATCTTGGTGGTATGCATTTGAGATGGTTGAAATGATGCCTCTGAGATCCTTGTTTGAAACTTCCTTGTTTGAAAATTTGAAATTCTTAAAATCCCCGTTGTCTCGTGAAACCGACTTCAGAGACGATGAAGTCTTCTTAAAGATTGAGGTCTGCTATGATTATAAGAGGAGGATTGGATGAAGTTGTCTAGATTTGTTTGGGGGTGTGCTATCAACATAACAAAAGGATTAGGATATATTCGCTCGCTCGAGAAGTTAGAGGTTTGAATCCTGTTGTTTAACACAAAATATAGGGAAGGCGTAACAGCCCAAGCCCACCGCTAGCAAATATTGTTGTCTTTGGGTTTTCCTTTTTGACCTTCCCTTCGGGCCTTTCTCAAAGGTGTCTGCTAGAGAAGTTTCCACACTCTTATAAAGAATGCTTCGTTCTCCTCCCTAGAGGGGTGTCTGCTAGAGAGGTTTTCACAACCTTATAAAGAATGCTTCGTTCTCTTCCCTAGAGGGGCGTCTGCTAGAGAGGTTTCCACACCCTTATAAAGAATGCTTCGTTCTCCTCCCTAGAGGGGCGTCTGCTAGAAAGGTTTCCACACCCTTATAAAGAATGCTTCGTTCTCCTCCCTAGAGGGGCGTCTGCTAGAGAGGTTTCCACACCCTTATAAAGAATGCTTCGTTCTCCTCTCTAGAGGGGCGTCTGCTAGAGAGCTTTTCACACCCTTATAAACACCCTTATAAAGAAGGTTTCATTCTCCTCGAAAGAGGGGTAGCTTTTTAGTGGAGCCAAAAAGAAAAGCACTACTATTAGAAACTCATTCATCCTACCCATTGAATTATACTCGGAAACTCAGCTTTTGTATACTACAATTTCATACTTGCATTCAAGATTTCGTGACTCGATGTTTCATCTTGTATCTTCTCAGATGGGAATGAGTAGGCGAGGCAGGGCGAGCAATCGTGTCGGTTTTCCTCCTCTGTTTCTCTGTATGGTGGCGCTTATTTGCATTGTGTTCGGATACCTTTTGCGCTATTGAAGAACCGAAGGCGCTGATCGGGAGCGGTGAAGAGAGAGCGGAGAAGACATGTAAAGGAATTATCTTACTTTATGTAGATAGAATGGTAGCTCTAGGGATGTTGTGTGTTGTCAATAAGAATAAAGCCCCTCATTCA

mRNA sequence

ATGTTATCTTGGTGGTATGCATTTGAGATGGTTGAAATGATGCCTCTGAGATCCTTGTTTGAAACTTCCTTGTTTGAAAATTTGAAATTCTTAAAATCCCCGTTGTCTCGTGAAACCGACTTCAGAGACGATGAAGTCTTCTTAAAGATTGAGATGGGAATGAGTAGGCGAGGCAGGGCGAGCAATCGTGTCGGTTTTCCTCCTCTGTTTCTCTGTATGGTGGCGCTTATTTGCATTGTGTTCGGATACCTTTTGCGCTATTGAAGAACCGAAGGCGCTGATCGGGAGCGGTGAAGAGAGAGCGGAGAAGACATGTAAAGGAATTATCTTACTTTATGTAGATAGAATGGTAGCTCTAGGGATGTTGTGTGTTGTCAATAAGAATAAAGCCCCTCATTCA

Coding sequence (CDS)

ATGTTATCTTGGTGGTATGCATTTGAGATGGTTGAAATGATGCCTCTGAGATCCTTGTTTGAAACTTCCTTGTTTGAAAATTTGAAATTCTTAAAATCCCCGTTGTCTCGTGAAACCGACTTCAGAGACGATGAAGTCTTCTTAAAGATTGAGATGGGAATGAGTAGGCGAGGCAGGGCGAGCAATCGTGTCGGTTTTCCTCCTCTGTTTCTCTGTATGGTGGCGCTTATTTGCATTGTGTTCGGATACCTTTTGCGCTATTGA

Protein sequence

MLSWWYAFEMVEMMPLRSLFETSLFENLKFLKSPLSRETDFRDDEVFLKIEMGMSRRGRASNRVGFPPLFLCMVALICIVFGYLLRY
Homology
[Close]
BLAST of Carg17568 vs. NCBI nr
Match: KAG7021130.1 (hypothetical protein SDJN02_17818, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 176.0 bits (445), Expect = 1.4e-40
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MLSWWYAFEMVEMMPLRSLFETSLFENLKFLKSPLSRETDFRDDEVFLKIEMGMSRRGRA 60
          MLSWWYAFEMVEMMPLRSLFETSLFENLKFLKSPLSRETDFRDDEVFLKIEMGMSRRGRA
Sbjct: 1  MLSWWYAFEMVEMMPLRSLFETSLFENLKFLKSPLSRETDFRDDEVFLKIEMGMSRRGRA 60

Query: 61 SNRVGFPPLFLCMVALICIVFGYLLRY 88
          SNRVGFPPLFLCMVALICIVFGYLLRY
Sbjct: 61 SNRVGFPPLFLCMVALICIVFGYLLRY 87

[Close]
BLAST of Carg17568 vs. NCBI nr
Match: XP_022937988.1 (vesicle-associated protein 2-2-like [Cucurbita moschata] >XP_022937989.1 vesicle-associated protein 2-2-like [Cucurbita moschata])

HSP 1 Score: 79.0 bits (193), Expect = 2.3e-11
Identity = 44/57 (77.19%), Postives = 44/57 (77.19%), Query Frame = 0 

Query: 33  SPLSRETDFRDDEVFLKIE--MGMSRRGRASNRVGFPPLFLCMVALICIVFGYLLRY 88
           S LS E  F   EV    E  MGMSRRGRASNRVGFPPLFLCMVALICIVFGYLLRY
Sbjct: 382 SRLSEERRFSAQEVKNLKENLMGMSRRGRASNRVGFPPLFLCMVALICIVFGYLLRY 438

[Close]
BLAST of Carg17568 vs. NCBI nr
Match: XP_023538184.1 (vesicle-associated protein 2-2-like [Cucurbita pepo subsp. pepo] >XP_023538186.1 vesicle-associated protein 2-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.0 bits (193), Expect = 2.3e-11
Identity = 44/57 (77.19%), Postives = 44/57 (77.19%), Query Frame = 0 

Query: 33  SPLSRETDFRDDEVFLKIE--MGMSRRGRASNRVGFPPLFLCMVALICIVFGYLLRY 88
           S LS E  F   EV    E  MGMSRRGRASNRVGFPPLFLCMVALICIVFGYLLRY
Sbjct: 382 SRLSEERRFSAQEVKNLKENLMGMSRRGRASNRVGFPPLFLCMVALICIVFGYLLRY 438

[Close]
BLAST of Carg17568 vs. NCBI nr
Match: XP_022965742.1 (vesicle-associated protein 2-2-like [Cucurbita maxima] >XP_022965743.1 vesicle-associated protein 2-2-like [Cucurbita maxima])

HSP 1 Score: 79.0 bits (193), Expect = 2.3e-11
Identity = 44/57 (77.19%), Postives = 44/57 (77.19%), Query Frame = 0 

Query: 33  SPLSRETDFRDDEVFLKIE--MGMSRRGRASNRVGFPPLFLCMVALICIVFGYLLRY 88
           S LS E  F   EV    E  MGMSRRGRASNRVGFPPLFLCMVALICIVFGYLLRY
Sbjct: 382 SRLSEERRFSAQEVKNLKENLMGMSRRGRASNRVGFPPLFLCMVALICIVFGYLLRY 438

[Close]
BLAST of Carg17568 vs. NCBI nr
Match: XP_004139205.1 (vesicle-associated protein 2-2 isoform X2 [Cucumis sativus] >KAE8651570.1 hypothetical protein Csa_019344 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 2.2e-06
Identity = 27/34 (79.41%), Postives = 33/34 (97.06%), Query Frame = 0 

Query: 54  MSRRGRASNRVGFPPLFLCMVALICIVFGYLLRY 88
           +SRRGRASN+VGFPPLF+CMVALICIVFG++L +
Sbjct: 361 LSRRGRASNQVGFPPLFICMVALICIVFGFVLHH 394

[Close]
BLAST of Carg17568 vs. ExPASy TrEMBL
Match: A0A6J1HL55 (vesicle-associated protein 2-2-like OS=Cucurbita maxima OX=3661 GN=LOC111465546 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-11
Identity = 44/57 (77.19%), Postives = 44/57 (77.19%), Query Frame = 0 

Query: 33  SPLSRETDFRDDEVFLKIE--MGMSRRGRASNRVGFPPLFLCMVALICIVFGYLLRY 88
           S LS E  F   EV    E  MGMSRRGRASNRVGFPPLFLCMVALICIVFGYLLRY
Sbjct: 382 SRLSEERRFSAQEVKNLKENLMGMSRRGRASNRVGFPPLFLCMVALICIVFGYLLRY 438

[Close]
BLAST of Carg17568 vs. ExPASy TrEMBL
Match: A0A6J1FHK4 (vesicle-associated protein 2-2-like OS=Cucurbita moschata OX=3662 GN=LOC111444210 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-11
Identity = 44/57 (77.19%), Postives = 44/57 (77.19%), Query Frame = 0 

Query: 33  SPLSRETDFRDDEVFLKIE--MGMSRRGRASNRVGFPPLFLCMVALICIVFGYLLRY 88
           S LS E  F   EV    E  MGMSRRGRASNRVGFPPLFLCMVALICIVFGYLLRY
Sbjct: 382 SRLSEERRFSAQEVKNLKENLMGMSRRGRASNRVGFPPLFLCMVALICIVFGYLLRY 438

[Close]
BLAST of Carg17568 vs. ExPASy TrEMBL
Match: A0A0A0LIH5 (MSP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G013300 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-06
Identity = 27/34 (79.41%), Postives = 33/34 (97.06%), Query Frame = 0 

Query: 54  MSRRGRASNRVGFPPLFLCMVALICIVFGYLLRY 88
           +SRRGRASN+VGFPPLF+CMVALICIVFG++L +
Sbjct: 396 LSRRGRASNQVGFPPLFICMVALICIVFGFVLHH 429

[Close]
BLAST of Carg17568 vs. ExPASy TrEMBL
Match: A0A6J1KGT7 (vesicle-associated protein 2-2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111493755 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.4e-06
Identity = 25/36 (69.44%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 52  MGMSRRGRASNRVGFPPLFLCMVALICIVFGYLLRY 88
           M +SR+GRASN+VGFPPLF+CMVALIC+V G++L +
Sbjct: 437 MELSRKGRASNQVGFPPLFICMVALICVVLGFILHH 472

[Close]
BLAST of Carg17568 vs. ExPASy TrEMBL
Match: A0A6J1G3A5 (vesicle-associated protein 2-2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111450409 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.4e-06
Identity = 25/36 (69.44%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 52  MGMSRRGRASNRVGFPPLFLCMVALICIVFGYLLRY 88
           M +SR+GRASN+VGFPPLF+CMVALIC+V G++L +
Sbjct: 437 MELSRKGRASNQVGFPPLFICMVALICVVLGFILHH 472

The following BLAST results are available for this feature:
BLAST of Carg17568 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7021130.11.4e-40100.00hypothetical protein SDJN02_17818, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022937988.12.3e-1177.19vesicle-associated protein 2-2-like [Cucurbita moschata] >XP_022937989.1 vesicle... [more]
XP_023538184.12.3e-1177.19vesicle-associated protein 2-2-like [Cucurbita pepo subsp. pepo] >XP_023538186.1... [more]
XP_022965742.12.3e-1177.19vesicle-associated protein 2-2-like [Cucurbita maxima] >XP_022965743.1 vesicle-a... [more]
XP_004139205.12.2e-0679.41vesicle-associated protein 2-2 isoform X2 [Cucumis sativus] >KAE8651570.1 hypoth... [more]
BLAST of Carg17568 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg17568 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HL551.1e-1177.19vesicle-associated protein 2-2-like OS=Cucurbita maxima OX=3661 GN=LOC111465546 ... [more]
A0A6J1FHK41.1e-1177.19vesicle-associated protein 2-2-like OS=Cucurbita moschata OX=3662 GN=LOC11144421... [more]
A0A0A0LIH51.1e-0679.41MSP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G013300 PE=4 SV... [more]
A0A6J1KGT75.4e-0669.44vesicle-associated protein 2-2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LO... [more]
A0A6J1G3A55.4e-0669.44vesicle-associated protein 2-2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=... [more]
BLAST of Carg17568 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17568-RACarg17568-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090158 endoplasmic reticulum membrane organization
biological_process GO:0061817 endoplasmic reticulum-plasma membrane tethering
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005886 plasma membrane