Carg17541 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg17541
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	F-box domain LysM domain containing protein
Location	Carg_Chr12: 10254762 .. 10258979 (-)
RNA-Seq Expression	Carg17541
Synteny	Carg17541

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTGCTGTTGCGACGAAGATGACGACGTTGAGATCCTGAGGCATCTTCATCCCTCACCGACCGTTCAGTCTCCGCCGCAGCAGCAGCCTACGCTACCGGATTCTTCCACTGCCGTTCTGTCTCCGATGAACTCTCACTTCTTCGCCCTCTCATGCCGCGACATCCTTCGCCTCATCTTTGAGAAGCTTTCCATCCCCGATTTGGCTCGTTCCAGCTGCGTTTCCCGTCTCTGGAACTCTGTTGCTTCCGATCAGGAAATTGTTTCCGGTGCTTTCAAAGCGCCGTGGAAGGTGAAGGATGTAATAGGGAAGCCGAGCTCCGGGAGCTTCTGGAGAGATAATTGTCTTGGAAAGTTTGCGATCTCTCATCGGATTCTCCGCGGCGATAGCTTGGCTAGTCTTGCCGTTAAGTATTCGGTTCAGGTATGCGCTTCGAAAACTGTTTAATTCTTATGAAATTGACTGGAAACAGTAGGACGAGTATAGTTTTTGTAGAGTTTTTTAGTTTTGAGGAGTTGCGATCATCAATTTTCTTTGATTGTACTTTCCATCTGGCTGGAGTTTAATCTTGTTCGTCCGAAGAACAAGATTGTCAAGACGGTTTTATCGCTGTTCAAACTTCTAAAGTCCTCTTACTGAGTCCTTTATTTGTTGGAGGTGAAACCAGGCTAACTGAAAGTTGTTAGACGAACACGACCCTCCACAGTGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGCTTTGAGCTTCTCCAGAAGGCCTCATACCAATGGAGAGAGTATTCTTTGATTATAAACCCAGGATCATTCCCTGAATTAGCCGATGTGGGGACTTTCATCATCCAACACCTCGCCTCGAACAACGTACGCCTCCCCTTAATCGAGGCTCGACTCCTTTTTCTTTTGGAGTCTTAGTCATTTTTTACTATGCCTTCGAGGAGGCTCAACTTCTTTTCTTTTGGAGTCCTTTGTTCGACATTTGAGGATTTACCAATCTATTGGCACGACTAAGTTTAGGGCATGACTCTGATACCATGTTAGACGAATACGACTCTCCACAATGGTATGATGTTGTCCACTTTGAGCATAAGCTCTCATGAGTTTGCTTTGGGCTTCCCCAAAAGGCCTTATACCAATGGAGAGAGTATTCTTTGATTATAAACTCATGATCATTCCTTAAATTAGCCGATGTGGGACTTTCATCATCCAACACCTCCTCTCGAACAAAGTACACCTTCTCTTAACCGAGGCTCGACTCTTTTTTCTTTTGGAGTCTTAGTCATTTTTTACCATGCCTTCGAGGAGGCTCGACTCCTTTTCTTTTGGAGTTCTTTGTTCGACATTTGAGGATTTACCAATCTATTGGCACGACTAAGCTTTAGGGCATGGCTCTGATACCATGTTAGACGAACACGACTCTCCACAATGGTATGATGTTGTCCACTTTAAGCATAAGCTCTCATGGGTTTGCTTTGGGCTTCCCCAAAAGGCCTTATACCAATGGAGAGGGTATTCTTTGATTATAAACTCATGATCATTCCCTAAATTAGCCGATGTGGGACTTTCATCATCCAACACCTCCCCTCGAACGAGGCTCGACTCCTTTTTTCTTTTGGAGTCTTAGTCATTTTTTACTATGCTTTCGAGGAGGCTCAACTCCTTTTCTTTTGGAGTCCTCTGTTCGACATTTGAAGATTTACCAATCTATTGGCACGACTAAGTTTTAGGGCATGACTCTGATACTATGTTAGACGAACACGATTCTCCACAATGGTATGATGTTGTCCACTTTAAGCATAAGCTCTCATGGCTTTGCTTTGGGCTTCCCCAAAAGGCCTCCTACCAATGGAGAGAGTATTATTTGATTATAAACCCATGATCATTCCCTAAATTAGTCGATGTGGGACTTTCATCATCCAACACCTCTCCTCGAACAAAGTACGTCTCCCATTAATCGAGGCTCGACTCCTTTTTCTTTTGGAGTCCTTTGTTCGACATTTGAGGATTTACCAATCTATTGGCACGACTAAGTTTTAGGGCATGACTCTGATACCATGTTAGATGACAAACACGATTTTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGCTTTGGGCTTCCCCAAAAGGCCTCATACCAATGAAGAGAGTATTCTTTGTTCGTAGTTTTTTTTCCCAGCTCCCTAATCCTCGTAAATTGTAAAATATCAATCTAGAAGGATCAAGTATAATTGTTGAGATCAACCTTTTTGATATTGTTCACGATGGCTATGGACTCTGGTGTAATTTATTTCACAAATATACTGTTCTTTTCTTGTATTGATTTCGCAAACATATTGTTATCGATGGTTATAGACTTTGGTACGTCGATTTTGTAAATGTATTGTTCTTGATGGCTACCGACTTTGGTGTGTCGATTTCGTAAATGTATTGTTTTTGATGGTTACCGACTTTGGTGTGTCAATTTCGTAAATGTATTGTTCTTGATGGTTACAGACTTTGGTGTGTCAATTTCGTAAATGTATTGTTCTTGATGGTTACAGACTTTGGTGTGTCGATTTCGTAAATGTATTGTTCTTGATGGTTACCGACTTTGGTGTGTCAATTTCGTAAATGTATTGTTCTTGATGGTTACAGACTTTGGTGTGTCAATTTCGTAAATGTATTGTTCTTGATGGTTACAGACTTTGGTGTGTCGATTTCGTAAATGTATTGTTTCTTGATGGTTACTTTTGATGTTCGATTTCGTAAATGTATTTTGTTCTTGATGGTTACAGACTTTGGTGTGTCGATTTCGTAAATGTATTGTTCTTGATGGTTACAGACTTTGGTGTGTCGATTTCGTAAATGTATTGTTCTTGATGGTTACCGACTTTGGTGTGTCGATTTCGTAAATGTATTGTTCTTGGTGGTTACAGACTTTGGTGTGTCGATTTCGTAAATGTATTGTTCTTGATGGTTACCGACTTTGGTGTGTCGATTTTGTAAATGTATTGTTCTTGGTGGTTACCGACTTTGGTGTGTCGGTTTCGTAAATGTATTGTTCTTGATGGTTAAGACTTTGGTGTGTTCGATTTCGTAAATGTATTGTTCTTGATGGTTACAGACTTTTGTGTGTCGATTTCGTAATGTATTGTTCTTGATGGTTACAGACTTTGGTGTGTCGATTTCGGTGTATTGTTCTTGGTGGTTACCGACTTTGGTGTGTCGATTTCGTAAATGTATTGTTCTTGATGGTTACAGACTTTGGTGTGTCGATTTCGTAAATGTATTGTTCTTGATGGTTACCGACTTTGGTGTGTCGATTTCGTAAATGTATTGTTCTTGGTGGTTACCGACTTTGGTGTGTCAATTTCGTAAATGTATTGTTCTTGATGGTTACAGACTTTGGTGCGTCGATTTCGTAAATGTATTGTTCTTGATGGTTACCGACTTTGGTGTGTCGATTTCGTAAATTTATTGTTCTTGATGGTTACAAACTTTGGTGTGTCGATTTCGTAAATGTATTGTTCTTGATGGTTACAGACTTTGGTGTGTCGATTTCGTAAATGTATTGTTCTTGATGGTTACAGACTTTGGTGTGTCGATTTCGTAAATGTATTGTTCTTGATGGTTACCGACTTTGGTGTGTCGATTTCGTAAATGTATTGTTCTTGGTGGTTACCGACTTTGGTGTGTCGATTTCGTAAATGTATTGTTCTTGATGGTTATAGACTTTGGTGTGTTGATTTCGTAAATGTATTGTTCTCGATGGTTATGGACCTTGTTGTTTTGATCTCGTAAATACACTGTTCTCGTAGGTCATAGACATAAAACGTCTAAACAACATGATGAGCGACCATGGCATATACTCAAGAGAAAGGTTGCTAATCCCCATTGGCAATCCCAACATACTTATAAACAGTATATGCTACATCGAGATGGACGCTATCGCGAAACGGGAAGTTGCAACGTTGTATTTAGATGGCATCCCCACGACCCATCATTTGTATGGTAGGGAGACGAATGATCAGGGTATGTCCTCTGTTCAAGTGAAGAAACGAGTACTCCATTCGTTGAGTCGGAGCATGATGGTCGACGACGAAACCGCTCAATATTACTTATCCATTTCCGATGGCGATCCTCGAGCTGCTCTCACAGAATTCGCCGAAGACATCAGGTGGGAGAGGCATATGGGCATGGCCTAG

mRNA sequence

ATGGGGTGCTGTTGCGACGAAGATGACGACGTTGAGATCCTGAGGCATCTTCATCCCTCACCGACCGTTCAGTCTCCGCCGCAGCAGCAGCCTACGCTACCGGATTCTTCCACTGCCGTTCTGTCTCCGATGAACTCTCACTTCTTCGCCCTCTCATGCCGCGACATCCTTCGCCTCATCTTTGAGAAGCTTTCCATCCCCGATTTGGCTCGTTCCAGCTGCGTTTCCCGTCTCTGGAACTCTGTTGCTTCCGATCAGGAAATTGTTTCCGGTGCTTTCAAAGCGCCGTGGAAGGTGAAGGATGTAATAGGGAAGCCGAGCTCCGGGAGCTTCTGGAGAGATAATTGTCTTGGAAAGTTTGCGATCTCTCATCGGATTCTCCGCGGCGATAGCTTGGCTAGTCTTGCCGTTAAGTATTCGGTTCAGGTCATAGACATAAAACGTCTAAACAACATGATGAGCGACCATGGCATATACTCAAGAGAAAGGTTGCTAATCCCCATTGGCAATCCCAACATACTTATAAACAGTATATGCTACATCGAGATGGACGCTATCGCGAAACGGGAAGTTGCAACGTTGTATTTAGATGGCATCCCCACGACCCATCATTTGTATGGTAGGGAGACGAATGATCAGGGTATGTCCTCTGTTCAAGTGAAGAAACGAGTACTCCATTCGTTGAGTCGGAGCATGATGGTCGACGACGAAACCGCTCAATATTACTTATCCATTTCCGATGGCGATCCTCGAGCTGCTCTCACAGAATTCGCCGAAGACATCAGGTGGGAGAGGCATATGGGCATGGCCTAG

Coding sequence (CDS)

ATGGGGTGCTGTTGCGACGAAGATGACGACGTTGAGATCCTGAGGCATCTTCATCCCTCACCGACCGTTCAGTCTCCGCCGCAGCAGCAGCCTACGCTACCGGATTCTTCCACTGCCGTTCTGTCTCCGATGAACTCTCACTTCTTCGCCCTCTCATGCCGCGACATCCTTCGCCTCATCTTTGAGAAGCTTTCCATCCCCGATTTGGCTCGTTCCAGCTGCGTTTCCCGTCTCTGGAACTCTGTTGCTTCCGATCAGGAAATTGTTTCCGGTGCTTTCAAAGCGCCGTGGAAGGTGAAGGATGTAATAGGGAAGCCGAGCTCCGGGAGCTTCTGGAGAGATAATTGTCTTGGAAAGTTTGCGATCTCTCATCGGATTCTCCGCGGCGATAGCTTGGCTAGTCTTGCCGTTAAGTATTCGGTTCAGGTCATAGACATAAAACGTCTAAACAACATGATGAGCGACCATGGCATATACTCAAGAGAAAGGTTGCTAATCCCCATTGGCAATCCCAACATACTTATAAACAGTATATGCTACATCGAGATGGACGCTATCGCGAAACGGGAAGTTGCAACGTTGTATTTAGATGGCATCCCCACGACCCATCATTTGTATGGTAGGGAGACGAATGATCAGGGTATGTCCTCTGTTCAAGTGAAGAAACGAGTACTCCATTCGTTGAGTCGGAGCATGATGGTCGACGACGAAACCGCTCAATATTACTTATCCATTTCCGATGGCGATCCTCGAGCTGCTCTCACAGAATTCGCCGAAGACATCAGGTGGGAGAGGCATATGGGCATGGCCTAG

Protein sequence

MGCCCDEDDDVEILRHLHPSPTVQSPPQQQPTLPDSSTAVLSPMNSHFFALSCRDILRLIFEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVATLYLDGIPTTHHLYGRETNDQGMSSVQVKKRVLHSLSRSMMVDDETAQYYLSISDGDPRAALTEFAEDIRWERHMGMA

Homology

[Close]

BLAST of Carg17541 vs. NCBI nr
Match: KAG6586259.1 (F-box protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021103.1 F-box protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 548.1 bits (1411), Expect = 4.2e-152
Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 0


Query: 1   MGCCCDEDDDVEILRHLHPSPTVQSPPQQQPTLPDSSTAVLSPMNSHFFALSCRDILRLI 60
           MGCCCDEDDDVEILRHLHPSPTVQSPPQQQPTLPDSSTAVLSPMNSHFFALSCRDILRLI
Sbjct: 1   MGCCCDEDDDVEILRHLHPSPTVQSPPQQQPTLPDSSTAVLSPMNSHFFALSCRDILRLI 60

Query: 61  FEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNCLGKF 120
           FEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNCLGKF
Sbjct: 61  FEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNCLGKF 120

Query: 121 AISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICY 180
           AISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICY
Sbjct: 121 AISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICY 180

Query: 181 IEMDAIAKREVATLYLDGIPTTHHLYGRETNDQGMSSVQVKKRVLHSLSRSMMVDDETAQ 240
           IEMDAIAKREVATLYLDGIPTTHHLYGRETNDQGMSSVQVKKRVLHSLSRSMMVDDETAQ
Sbjct: 181 IEMDAIAKREVATLYLDGIPTTHHLYGRETNDQGMSSVQVKKRVLHSLSRSMMVDDETAQ 240

Query: 241 YYLSISDGDPRAALTEFAEDIRWERHMGMA 271
           YYLSISDGDPRAALTEFAEDIRWERHMGMA
Sbjct: 241 YYLSISDGDPRAALTEFAEDIRWERHMGMA 270

[Close]

BLAST of Carg17541 vs. NCBI nr
Match: XP_022937590.1 (F-box protein At1g55000 [Cucurbita moschata])

HSP 1 Score: 547.0 bits (1408), Expect = 9.3e-152
Identity = 269/270 (99.63%), Postives = 270/270 (100.00%), Query Frame = 0


Query: 1   MGCCCDEDDDVEILRHLHPSPTVQSPPQQQPTLPDSSTAVLSPMNSHFFALSCRDILRLI 60
           MGCCCDEDDDVEILRHLHPSPTVQSPPQQQPTLPDSSTAVLSPMNSHFFALSCRDILRLI
Sbjct: 1   MGCCCDEDDDVEILRHLHPSPTVQSPPQQQPTLPDSSTAVLSPMNSHFFALSCRDILRLI 60

Query: 61  FEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNCLGKF 120
           FEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNCLGKF
Sbjct: 61  FEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNCLGKF 120

Query: 121 AISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICY 180
           AISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICY
Sbjct: 121 AISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICY 180

Query: 181 IEMDAIAKREVATLYLDGIPTTHHLYGRETNDQGMSSVQVKKRVLHSLSRSMMVDDETAQ 240
           IEMDAIAKREVATLYLDGIPTTHHLYG+ETNDQGMSSVQVKKRVLHSLSRSMMVDDETAQ
Sbjct: 181 IEMDAIAKREVATLYLDGIPTTHHLYGKETNDQGMSSVQVKKRVLHSLSRSMMVDDETAQ 240

Query: 241 YYLSISDGDPRAALTEFAEDIRWERHMGMA 271
           YYLSISDGDPRAALTEFAEDIRWERHMGMA
Sbjct: 241 YYLSISDGDPRAALTEFAEDIRWERHMGMA 270

[Close]

BLAST of Carg17541 vs. NCBI nr
Match: XP_022965884.1 (F-box protein At1g55000 [Cucurbita maxima])

HSP 1 Score: 541.6 bits (1394), Expect = 3.9e-150
Identity = 266/270 (98.52%), Postives = 269/270 (99.63%), Query Frame = 0


Query: 1   MGCCCDEDDDVEILRHLHPSPTVQSPPQQQPTLPDSSTAVLSPMNSHFFALSCRDILRLI 60
           MGCCCDEDDDVEILRHLHPSPTVQSPPQQQPTLP SSTAVLSPMNSHFFALSCRDILRLI
Sbjct: 1   MGCCCDEDDDVEILRHLHPSPTVQSPPQQQPTLPGSSTAVLSPMNSHFFALSCRDILRLI 60

Query: 61  FEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNCLGKF 120
           FEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNCLGKF
Sbjct: 61  FEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNCLGKF 120

Query: 121 AISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICY 180
           AISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRER+LIPIGNPNILINSICY
Sbjct: 121 AISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERMLIPIGNPNILINSICY 180

Query: 181 IEMDAIAKREVATLYLDGIPTTHHLYGRETNDQGMSSVQVKKRVLHSLSRSMMVDDETAQ 240
           IEMDAIAKREVATLYLDGIPTTHHLYG+ET+DQGMSSVQVKKRVLHSLSRSMMVDDETAQ
Sbjct: 181 IEMDAIAKREVATLYLDGIPTTHHLYGKETDDQGMSSVQVKKRVLHSLSRSMMVDDETAQ 240

Query: 241 YYLSISDGDPRAALTEFAEDIRWERHMGMA 271
           YYLSISDGDPRAALTEFAEDIRWERHMGMA
Sbjct: 241 YYLSISDGDPRAALTEFAEDIRWERHMGMA 270

[Close]

BLAST of Carg17541 vs. NCBI nr
Match: XP_023537183.1 (F-box protein At1g55000 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 537.3 bits (1383), Expect = 7.4e-149
Identity = 267/274 (97.45%), Postives = 269/274 (98.18%), Query Frame = 0


Query: 1   MGCCCDEDDDVEILRHLHPSPTVQSPP----QQQPTLPDSSTAVLSPMNSHFFALSCRDI 60
           MGCCCDEDDDVEILRHLHPSPTVQSPP    QQQPTLPDSSTAVLSPMNSHFFALSCRDI
Sbjct: 1   MGCCCDEDDDVEILRHLHPSPTVQSPPQQQLQQQPTLPDSSTAVLSPMNSHFFALSCRDI 60

Query: 61  LRLIFEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNC 120
           LRLIFEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNC
Sbjct: 61  LRLIFEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNC 120

Query: 121 LGKFAISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERLLIPIGNPNILIN 180
           LGKFAISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERLLIPIGNPNILIN
Sbjct: 121 LGKFAISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERLLIPIGNPNILIN 180

Query: 181 SICYIEMDAIAKREVATLYLDGIPTTHHLYGRETNDQGMSSVQVKKRVLHSLSRSMMVDD 240
           SICYIEMDAIAKREVATLYLDGIPTTHHLYG+ET+D GMSSVQVKKRVLHSLSRSMMVDD
Sbjct: 181 SICYIEMDAIAKREVATLYLDGIPTTHHLYGKETDDHGMSSVQVKKRVLHSLSRSMMVDD 240

Query: 241 ETAQYYLSISDGDPRAALTEFAEDIRWERHMGMA 271
           ETAQYYLSISDGDPRAALTEFAEDIRWERHMGMA
Sbjct: 241 ETAQYYLSISDGDPRAALTEFAEDIRWERHMGMA 274

[Close]

BLAST of Carg17541 vs. NCBI nr
Match: XP_004139174.1 (F-box protein At1g55000 [Cucumis sativus] >KGN60915.1 hypothetical protein Csa_023439 [Cucumis sativus])

HSP 1 Score: 482.3 bits (1240), Expect = 2.8e-132
Identity = 238/270 (88.15%), Postives = 251/270 (92.96%), Query Frame = 0


Query: 1   MGCCCDEDDDVEILRHLHPSPTVQSPPQQQPTLPDSSTAVLSPMNSHFFALSCRDILRLI 60
           MGCCCD+DDDVEILRHL+PSP + SPP Q P   D S A+LSPMNSHFFALSCRDILRLI
Sbjct: 1   MGCCCDQDDDVEILRHLNPSPALHSPPPQPPP-ADHSAAILSPMNSHFFALSCRDILRLI 60

Query: 61  FEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNCLGKF 120
           FE LSIPDLARSSCV RLW+SVASDQEIVSGAFKAPWKVKDV+GKPSS SFWRDNCLGKF
Sbjct: 61  FENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKF 120

Query: 121 AISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICY 180
           AISHRILRGDSLASLAVKYSVQV DIKRLNNMMSDHGIYSRERLLIPIGNPN+LINSICY
Sbjct: 121 AISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICY 180

Query: 181 IEMDAIAKREVATLYLDGIPTTHHLYGRETNDQGMSSVQVKKRVLHSLSRSMMVDDETAQ 240
           IEMDAIAKREVA LYLDGIP T HLYG+ T++QGMSSVQV KRVLHSLSRSMMVDDETAQ
Sbjct: 181 IEMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDETAQ 240

Query: 241 YYLSISDGDPRAALTEFAEDIRWERHMGMA 271
           YYLSIS+G+PRAALTEFAEDIRWERHM +A
Sbjct: 241 YYLSISNGNPRAALTEFAEDIRWERHMSIA 269

[Close]

BLAST of Carg17541 vs. ExPASy Swiss-Prot
Match: Q9FZ32 (F-box protein At1g55000 OS=Arabidopsis thaliana OX=3702 GN=At1g55000 PE=1 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 3.9e-76
Identity = 136/220 (61.82%), Postives = 174/220 (79.09%), Query Frame = 0


Query: 50  ALSCRDILRLIFEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSG 109
           AL CRD L +IF+KL++ DLAR+SCV ++WNSVA++ ++V  AF APW++K+++G+P+S 
Sbjct: 2   ALYCRDTLIIIFQKLTVADLARASCVCKVWNSVATEDDLVVSAFTAPWRIKELVGRPASV 61

Query: 110 SFWRDNCLGKFAISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERLLIPIG 169
           SFWRDN + KFAISHRI RGDS+ SLAVKY+VQV+DIKRLNNMMSDHGIYSR+RLLIPI 
Sbjct: 62  SFWRDNGIWKFAISHRICRGDSVTSLAVKYAVQVMDIKRLNNMMSDHGIYSRDRLLIPIS 121

Query: 170 NPNILINSICYIEMDAIAKREVATLYLDGIPTTHHLYGRETNDQGMSSVQVKKRVLHSLS 229
           NP IL N+ CY+E+D  AKREVA LYL+G P         TN Q   S   K+R++ SL 
Sbjct: 122 NPEILANTTCYVELDKYAKREVAVLYLEGAPKREQPV-PGTNQQSNLSADGKRRLIESLR 181

Query: 230 RSMMVDDETAQYYLSISDGDPRAALTEFAEDIRWERHMGM 270
           RSM VDD TA YYL+I++GDPR+AL+EF+ D+RWER  G+
Sbjct: 182 RSMQVDDGTALYYLAIAEGDPRSALSEFSADLRWERQAGL 220

[Close]

BLAST of Carg17541 vs. ExPASy Swiss-Prot
Match: Q5HZA4 (LysM and putative peptidoglycan-binding domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Lysmd1 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 6.8e-04
Identity = 29/88 (32.95%), Postives = 48/88 (54.55%), Query Frame = 0


Query: 107 SSGSFWRDNC--LGKFAISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERL 166
           S GS  + +C  + +  + H++  GD+LA LA+KY V +  IKR N + ++  I+ ++ L
Sbjct: 23  SYGSLVQSSCSPVRERRLEHQLEPGDTLAGLALKYGVTMEQIKRTNRLYTNDSIFLKKTL 82

Query: 167 LIPI-GNPNILINSICYIEMDAIAKREV 192
            IPI   P  L N +   E +   + EV
Sbjct: 83  YIPILTEPRDLFNGLDSEEEENDGEEEV 110

[Close]

BLAST of Carg17541 vs. ExPASy TrEMBL
Match: A0A6J1FH66 (F-box protein At1g55000 OS=Cucurbita moschata OX=3662 GN=LOC111443952 PE=4 SV=1)

HSP 1 Score: 547.0 bits (1408), Expect = 4.5e-152
Identity = 269/270 (99.63%), Postives = 270/270 (100.00%), Query Frame = 0


Query: 1   MGCCCDEDDDVEILRHLHPSPTVQSPPQQQPTLPDSSTAVLSPMNSHFFALSCRDILRLI 60
           MGCCCDEDDDVEILRHLHPSPTVQSPPQQQPTLPDSSTAVLSPMNSHFFALSCRDILRLI
Sbjct: 1   MGCCCDEDDDVEILRHLHPSPTVQSPPQQQPTLPDSSTAVLSPMNSHFFALSCRDILRLI 60

Query: 61  FEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNCLGKF 120
           FEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNCLGKF
Sbjct: 61  FEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNCLGKF 120

Query: 121 AISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICY 180
           AISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICY
Sbjct: 121 AISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICY 180

Query: 181 IEMDAIAKREVATLYLDGIPTTHHLYGRETNDQGMSSVQVKKRVLHSLSRSMMVDDETAQ 240
           IEMDAIAKREVATLYLDGIPTTHHLYG+ETNDQGMSSVQVKKRVLHSLSRSMMVDDETAQ
Sbjct: 181 IEMDAIAKREVATLYLDGIPTTHHLYGKETNDQGMSSVQVKKRVLHSLSRSMMVDDETAQ 240

Query: 241 YYLSISDGDPRAALTEFAEDIRWERHMGMA 271
           YYLSISDGDPRAALTEFAEDIRWERHMGMA
Sbjct: 241 YYLSISDGDPRAALTEFAEDIRWERHMGMA 270

[Close]

BLAST of Carg17541 vs. ExPASy TrEMBL
Match: A0A6J1HS58 (F-box protein At1g55000 OS=Cucurbita maxima OX=3661 GN=LOC111465634 PE=4 SV=1)

HSP 1 Score: 541.6 bits (1394), Expect = 1.9e-150
Identity = 266/270 (98.52%), Postives = 269/270 (99.63%), Query Frame = 0


Query: 1   MGCCCDEDDDVEILRHLHPSPTVQSPPQQQPTLPDSSTAVLSPMNSHFFALSCRDILRLI 60
           MGCCCDEDDDVEILRHLHPSPTVQSPPQQQPTLP SSTAVLSPMNSHFFALSCRDILRLI
Sbjct: 1   MGCCCDEDDDVEILRHLHPSPTVQSPPQQQPTLPGSSTAVLSPMNSHFFALSCRDILRLI 60

Query: 61  FEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNCLGKF 120
           FEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNCLGKF
Sbjct: 61  FEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNCLGKF 120

Query: 121 AISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICY 180
           AISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRER+LIPIGNPNILINSICY
Sbjct: 121 AISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERMLIPIGNPNILINSICY 180

Query: 181 IEMDAIAKREVATLYLDGIPTTHHLYGRETNDQGMSSVQVKKRVLHSLSRSMMVDDETAQ 240
           IEMDAIAKREVATLYLDGIPTTHHLYG+ET+DQGMSSVQVKKRVLHSLSRSMMVDDETAQ
Sbjct: 181 IEMDAIAKREVATLYLDGIPTTHHLYGKETDDQGMSSVQVKKRVLHSLSRSMMVDDETAQ 240

Query: 241 YYLSISDGDPRAALTEFAEDIRWERHMGMA 271
           YYLSISDGDPRAALTEFAEDIRWERHMGMA
Sbjct: 241 YYLSISDGDPRAALTEFAEDIRWERHMGMA 270

[Close]

BLAST of Carg17541 vs. ExPASy TrEMBL
Match: A0A0A0LFS6 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G022840 PE=4 SV=1)

HSP 1 Score: 482.3 bits (1240), Expect = 1.4e-132
Identity = 238/270 (88.15%), Postives = 251/270 (92.96%), Query Frame = 0


Query: 1   MGCCCDEDDDVEILRHLHPSPTVQSPPQQQPTLPDSSTAVLSPMNSHFFALSCRDILRLI 60
           MGCCCD+DDDVEILRHL+PSP + SPP Q P   D S A+LSPMNSHFFALSCRDILRLI
Sbjct: 1   MGCCCDQDDDVEILRHLNPSPALHSPPPQPPP-ADHSAAILSPMNSHFFALSCRDILRLI 60

Query: 61  FEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNCLGKF 120
           FE LSIPDLARSSCV RLW+SVASDQEIVSGAFKAPWKVKDV+GKPSS SFWRDNCLGKF
Sbjct: 61  FENLSIPDLARSSCVCRLWHSVASDQEIVSGAFKAPWKVKDVVGKPSSWSFWRDNCLGKF 120

Query: 121 AISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICY 180
           AISHRILRGDSLASLAVKYSVQV DIKRLNNMMSDHGIYSRERLLIPIGNPN+LINSICY
Sbjct: 121 AISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICY 180

Query: 181 IEMDAIAKREVATLYLDGIPTTHHLYGRETNDQGMSSVQVKKRVLHSLSRSMMVDDETAQ 240
           IEMDAIAKREVA LYLDGIP T HLYG+ T++QGMSSVQV KRVLHSLSRSMMVDDETAQ
Sbjct: 181 IEMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDETAQ 240

Query: 241 YYLSISDGDPRAALTEFAEDIRWERHMGMA 271
           YYLSIS+G+PRAALTEFAEDIRWERHM +A
Sbjct: 241 YYLSISNGNPRAALTEFAEDIRWERHMSIA 269

[Close]

BLAST of Carg17541 vs. ExPASy TrEMBL
Match: A0A6J1D9A3 (F-box protein At1g55000 OS=Momordica charantia OX=3673 GN=LOC111018786 PE=4 SV=1)

HSP 1 Score: 481.5 bits (1238), Expect = 2.3e-132
Identity = 240/270 (88.89%), Postives = 251/270 (92.96%), Query Frame = 0


Query: 1   MGCCCDEDDDVEILRHLHPSPTVQSPPQQQPTLPDSSTAVLSPMNSHFFALSCRDILRLI 60
           MGCCCD+DDDVEILRHL+P+  V SP    P   DSSTAVLSPMNSHFFALSCRDILRLI
Sbjct: 1   MGCCCDQDDDVEILRHLNPAIAVHSPATLPPE-ADSSTAVLSPMNSHFFALSCRDILRLI 60

Query: 61  FEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNCLGKF 120
           FEKLSIPDLARSSCV RLW SVASD EIV+GAFKAPWK+KDVIGKPSSGSFWRDNCLGKF
Sbjct: 61  FEKLSIPDLARSSCVCRLWQSVASDHEIVAGAFKAPWKLKDVIGKPSSGSFWRDNCLGKF 120

Query: 121 AISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICY 180
           AISHRILRGDSLASLAVKYSVQV+DIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICY
Sbjct: 121 AISHRILRGDSLASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICY 180

Query: 181 IEMDAIAKREVATLYLDGIPTTHHLYGRETNDQGMSSVQVKKRVLHSLSRSMMVDDETAQ 240
           IEMDAIAKREVA LYLDGIPTTHHLYG+ T +QGMSSVQV K+VLHSLSRSMMVDDETA+
Sbjct: 181 IEMDAIAKREVAVLYLDGIPTTHHLYGKVTCEQGMSSVQVNKQVLHSLSRSMMVDDETAR 240

Query: 241 YYLSISDGDPRAALTEFAEDIRWERHMGMA 271
           YYLSIS GDPRAALTEFAEDIRWERHM +A
Sbjct: 241 YYLSISHGDPRAALTEFAEDIRWERHMSIA 269

[Close]

BLAST of Carg17541 vs. ExPASy TrEMBL
Match: A0A5A7TYE5 (Lipoxygenase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00510 PE=3 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 1.1e-105
Identity = 194/219 (88.58%), Postives = 203/219 (92.69%), Query Frame = 0


Query: 1   MGCCCDEDDDVEILRHLHPSPTVQSPPQQQPTLPDSSTAVLSPMNSHFFALSCRDILRLI 60
           MGCCCD+DDDVEILRHL+PSP V SPP Q P   D STA+LSPMNSHFFALSCRDILRLI
Sbjct: 1   MGCCCDQDDDVEILRHLNPSPPVHSPPLQPPP-ADHSTAILSPMNSHFFALSCRDILRLI 60

Query: 61  FEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNCLGKF 120
           FE LSIPDLARSSCV RLW+SVASDQEIV+GAFKAPWKVKDV+GKPSS SFWRDNCLGKF
Sbjct: 61  FEHLSIPDLARSSCVCRLWHSVASDQEIVAGAFKAPWKVKDVVGKPSSWSFWRDNCLGKF 120

Query: 121 AISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICY 180
           AISHRILRGDSLASLAVKYSVQV DIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICY
Sbjct: 121 AISHRILRGDSLASLAVKYSVQVTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICY 180

Query: 181 IEMDAIAKREVATLYLDGIPTTHHLYGRETNDQGMSSVQ 220
           IEMDAIAKREVA LYLDGIP T HLYG+ T++QGMSSVQ
Sbjct: 181 IEMDAIAKREVAVLYLDGIPMTQHLYGKVTSEQGMSSVQ 218

[Close]

BLAST of Carg17541 vs. TAIR 10
Match: AT1G55000.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 286.2 bits (731), Expect = 2.8e-77
Identity = 136/220 (61.82%), Postives = 174/220 (79.09%), Query Frame = 0


Query: 50  ALSCRDILRLIFEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSG 109
           AL CRD L +IF+KL++ DLAR+SCV ++WNSVA++ ++V  AF APW++K+++G+P+S 
Sbjct: 2   ALYCRDTLIIIFQKLTVADLARASCVCKVWNSVATEDDLVVSAFTAPWRIKELVGRPASV 61

Query: 110 SFWRDNCLGKFAISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERLLIPIG 169
           SFWRDN + KFAISHRI RGDS+ SLAVKY+VQV+DIKRLNNMMSDHGIYSR+RLLIPI 
Sbjct: 62  SFWRDNGIWKFAISHRICRGDSVTSLAVKYAVQVMDIKRLNNMMSDHGIYSRDRLLIPIS 121

Query: 170 NPNILINSICYIEMDAIAKREVATLYLDGIPTTHHLYGRETNDQGMSSVQVKKRVLHSLS 229
           NP IL N+ CY+E+D  AKREVA LYL+G P         TN Q   S   K+R++ SL 
Sbjct: 122 NPEILANTTCYVELDKYAKREVAVLYLEGAPKREQPV-PGTNQQSNLSADGKRRLIESLR 181

Query: 230 RSMMVDDETAQYYLSISDGDPRAALTEFAEDIRWERHMGM 270
           RSM VDD TA YYL+I++GDPR+AL+EF+ D+RWER  G+
Sbjct: 182 RSMQVDDGTALYYLAIAEGDPRSALSEFSADLRWERQAGL 220

[Close]

BLAST of Carg17541 vs. TAIR 10
Match: AT1G55000.2 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 286.2 bits (731), Expect = 2.8e-77
Identity = 136/220 (61.82%), Postives = 174/220 (79.09%), Query Frame = 0


Query: 50  ALSCRDILRLIFEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSG 109
           AL CRD L +IF+KL++ DLAR+SCV ++WNSVA++ ++V  AF APW++K+++G+P+S 
Sbjct: 2   ALYCRDTLIIIFQKLTVADLARASCVCKVWNSVATEDDLVVSAFTAPWRIKELVGRPASV 61

Query: 110 SFWRDNCLGKFAISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERLLIPIG 169
           SFWRDN + KFAISHRI RGDS+ SLAVKY+VQV+DIKRLNNMMSDHGIYSR+RLLIPI 
Sbjct: 62  SFWRDNGIWKFAISHRICRGDSVTSLAVKYAVQVMDIKRLNNMMSDHGIYSRDRLLIPIS 121

Query: 170 NPNILINSICYIEMDAIAKREVATLYLDGIPTTHHLYGRETNDQGMSSVQVKKRVLHSLS 229
           NP IL N+ CY+E+D  AKREVA LYL+G P         TN Q   S   K+R++ SL 
Sbjct: 122 NPEILANTTCYVELDKYAKREVAVLYLEGAPKREQPV-PGTNQQSNLSADGKRRLIESLR 181

Query: 230 RSMMVDDETAQYYLSISDGDPRAALTEFAEDIRWERHMGM 270
           RSM VDD TA YYL+I++GDPR+AL+EF+ D+RWER  G+
Sbjct: 182 RSMQVDDGTALYYLAIAEGDPRSALSEFSADLRWERQAGL 220

[Close]

BLAST of Carg17541 vs. TAIR 10
Match: AT1G55000.3 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 286.2 bits (731), Expect = 2.8e-77
Identity = 136/220 (61.82%), Postives = 174/220 (79.09%), Query Frame = 0


Query: 50  ALSCRDILRLIFEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSG 109
           AL CRD L +IF+KL++ DLAR+SCV ++WNSVA++ ++V  AF APW++K+++G+P+S 
Sbjct: 2   ALYCRDTLIIIFQKLTVADLARASCVCKVWNSVATEDDLVVSAFTAPWRIKELVGRPASV 61

Query: 110 SFWRDNCLGKFAISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERLLIPIG 169
           SFWRDN + KFAISHRI RGDS+ SLAVKY+VQV+DIKRLNNMMSDHGIYSR+RLLIPI 
Sbjct: 62  SFWRDNGIWKFAISHRICRGDSVTSLAVKYAVQVMDIKRLNNMMSDHGIYSRDRLLIPIS 121

Query: 170 NPNILINSICYIEMDAIAKREVATLYLDGIPTTHHLYGRETNDQGMSSVQVKKRVLHSLS 229
           NP IL N+ CY+E+D  AKREVA LYL+G P         TN Q   S   K+R++ SL 
Sbjct: 122 NPEILANTTCYVELDKYAKREVAVLYLEGAPKREQPV-PGTNQQSNLSADGKRRLIESLR 181

Query: 230 RSMMVDDETAQYYLSISDGDPRAALTEFAEDIRWERHMGM 270
           RSM VDD TA YYL+I++GDPR+AL+EF+ D+RWER  G+
Sbjct: 182 RSMQVDDGTALYYLAIAEGDPRSALSEFSADLRWERQAGL 220

[Close]

BLAST of Carg17541 vs. TAIR 10
Match: AT5G08200.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 52.0 bits (123), Expect = 8.8e-07
Identity = 26/65 (40.00%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 106 PSSGS--FWRDNCLGKFAISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRER 165
           PSS S  F   N   +  I HRI + D+LA +A+KY V+V D+K++NN+++D  +++ + 
Sbjct: 60  PSSSSPPFHGSNSPDRGYIEHRISKFDTLAGVAIKYGVEVADVKKMNNLVTDLQMFALKS 119

Query: 166 LLIPI 169
           L IP+
Sbjct: 120 LQIPL 124

[Close]

BLAST of Carg17541 vs. TAIR 10
Match: AT5G23130.1 (Peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 48.9 bits (115), Expect = 7.4e-06
Identity = 26/63 (41.27%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 106 PSSGSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERLL 165
           PSS S     C G   I HR+ + D+LA +A+KY V+V DI +LN +++D  +++ E L 
Sbjct: 60  PSSAS----TCAG--YIEHRVSKFDTLAGIAIKYGVEVADITKLNGLVTDLQMFALESLR 116

Query: 166 IPI 169
           IP+
Sbjct: 120 IPL 116

The following BLAST results are available for this feature:

BLAST of Carg17541 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6586259.1	4.2e-152	100.00	F-box protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021103.1 F-b...	[more]
XP_022937590.1	9.3e-152	99.63	F-box protein At1g55000 [Cucurbita moschata]	[more]
XP_022965884.1	3.9e-150	98.52	F-box protein At1g55000 [Cucurbita maxima]	[more]
XP_023537183.1	7.4e-149	97.45	F-box protein At1g55000 [Cucurbita pepo subsp. pepo]	[more]
XP_004139174.1	2.8e-132	88.15	F-box protein At1g55000 [Cucumis sativus] >KGN60915.1 hypothetical protein Csa_0...	[more]

BLAST of Carg17541 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FZ32	3.9e-76	61.82	F-box protein At1g55000 OS=Arabidopsis thaliana OX=3702 GN=At1g55000 PE=1 SV=1	[more]
Q5HZA4	6.8e-04	32.95	LysM and putative peptidoglycan-binding domain-containing protein 1 OS=Rattus no...	[more]

BLAST of Carg17541 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FH66	4.5e-152	99.63	F-box protein At1g55000 OS=Cucurbita moschata OX=3662 GN=LOC111443952 PE=4 SV=1	[more]
A0A6J1HS58	1.9e-150	98.52	F-box protein At1g55000 OS=Cucurbita maxima OX=3661 GN=LOC111465634 PE=4 SV=1	[more]
A0A0A0LFS6	1.4e-132	88.15	LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G022840 PE=4 S...	[more]
A0A6J1D9A3	2.3e-132	88.89	F-box protein At1g55000 OS=Momordica charantia OX=3673 GN=LOC111018786 PE=4 SV=1	[more]
A0A5A7TYE5	1.1e-105	88.58	Lipoxygenase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00510 P...	[more]

BLAST of Carg17541 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G55000.1	2.8e-77	61.82	peptidoglycan-binding LysM domain-containing protein	[more]
AT1G55000.2	2.8e-77	61.82	peptidoglycan-binding LysM domain-containing protein	[more]
AT1G55000.3	2.8e-77	61.82	peptidoglycan-binding LysM domain-containing protein	[more]
AT5G08200.1	8.8e-07	40.00	peptidoglycan-binding LysM domain-containing protein	[more]
AT5G23130.1	7.4e-06	41.27	Peptidoglycan-binding LysM domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036779	LysM domain superfamily	GENE3D	3.10.350.10	LysM domain	coord: 118..172 e-value: 2.6E-12 score: 48.1
IPR036779	LysM domain superfamily	SUPERFAMILY	54106	LysM domain	coord: 123..167
None	No IPR available	GENE3D	1.20.1280.50		coord: 53..88 e-value: 1.0E-6 score: 30.5
None	No IPR available	PANTHER	PTHR20932:SF8	LD22649P	coord: 1..268
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 54..86 e-value: 1.8E-5 score: 24.4
IPR018392	LysM domain	PFAM	PF01476	LysM	coord: 125..167 e-value: 5.3E-6 score: 26.4
IPR018392	LysM domain	PROSITE	PS51782	LYSM	coord: 122..166 score: 11.199506
IPR018392	LysM domain	CDD	cd00118	LysM	coord: 122..166 e-value: 1.99554E-7 score: 44.7837
IPR045030	LysM and putative peptidoglycan-binding domain-containing protein 1-4	PANTHER	PTHR20932	LOC443603 PROTEIN-RELATED	coord: 1..268
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 55..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17541-RA	Carg17541-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006633	fatty acid biosynthetic process
biological_process	GO:0031408	oxylipin biosynthetic process
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
molecular_function	GO:0005515	protein binding