Carg17540 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg17540
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein ALWAYS EARLY 2-like isoform X1
Location	Carg_Chr12: 10248042 .. 10252981 (-)
RNA-Seq Expression	Carg17540
Synteny	Carg17540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTAATCGACGGATAAGCCAGGTATTTCCACCATGTTCAGTCTTGATTTTCTTGCGTTTGTACTTCATCTTGAAGGCTGCATTGCGTATCTTGTTCTCACTAATTGCTTTAGCGGCTTACAGATAAAATTCAATGGCGCCTCCAAAGAAATCCACGAGTCGAAACAAAAGAATCCTTCATTCGAATAATCCCTCGGCTGAAAAAAGTTATACGAGCTCGCAAAGAAGCAAGAAACGAGTAATGCTATCCCGTCTCTTCTAAGTTCTGAATTCCTGAGAATTTTTTGTTGTCTGACTAGATTTTAGTTCTACTTTTAGTTGTGAATGTAAATTTCTATTGTTTCCGATAGGAATAACGACTCTCCACAATGGTATGATATTGTCAACTTTGAGCATAAGTTCTCATAGCTTTGCTTTGGGCTTCCCAAAAGGCTAGGTACCAATGAAAATATATTTCTTACTTATAAACCCATGTTTCATTCTCTAAATTAACAATGTGGGACTCCCTTCCAAAAATCCTCAACAGTCCTTCCCTCGAACAAAGTACACTACAAAGCCTTCCTTGAGGCCTATGGAGCCCTCAAACAGCCTTCCCTTAATCGAGGCTCGACTCCTCTGGAGCTCTCAAACAAAGTACACCATTTGTTCGACACTTGAGAGTCAGTTTTGATTACACCTTCGAGGCTCATAACTTCTTTGTTCGACTTTTGAGGATTCTATTGACATGACTAAGTTAAAGGCATGGCTCTGATACCATGTTAGGAATAACGACTTTCTACAATGGTATGATATTATCCACTTTGAGCATAAGCTCTCATGACTTTGCTTTGGGATTCCCAAAAGGCCTCATACCAATGGAGATTTATTTCTTACTTATAAACTCAGGATCATTTTCTAAATTAGCAAGGTGGGATTCCCTCCCAACAATCTTCAACAGTCCTTCCCTCGAACAAAGTACACTACAGAGCCTTCCCTGAGGCCTATGGAGCCGTTAAACAGCCTCCCCTTAATCGAGGCTCGACTCCTTCTCTAGAGCTCTCGAACAAAGTACACCCTTTGTTCGACACTTGAGTCACTTTTAACTACACCTTCGAGGCTCACAACTTCTTTGTTCAACTTTTGAGCATTCTATTGACAGGACTAAGTTAAGGGCATGACTCTGATACCATGTTAGGAATAACGACTTTCTACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGATTTGCTTTGGGCTTCCCAAAAGGCCTCATCCCAATGGAGATGTATTTCTTACTTATAAACTCATGATCGTTCTCTAAATTAGCCAATGTGGGACTTCCTCCCAACAATCCTCAACGGTTTCTCTCAGTAAGATTAAGTTTGGAGACCGAATACAGAGAAGAATGGAGTAGGCCGTCGATTTCAATTTTGATTTTAGCTTCAGGACACCCCGAGAGTATCTGTCAGTAATTTACACCTTTTAAGGGGTATAAGAAACAGTGCAGATGTTCATACGTTGATATACTACAAAATACCTCATTAAAAAGGCAGGATTTTGTCTTATTTTTTTGATGATGGTGGTGCTGGTGTGTGAATTTTTCATTAAAAGCTGTTCAATAAAGGGTTCTTCACCATTTCTATCTATTTCAAGGTTGAAGAATCTCATATCTGTGGTCCTGATTGTTATATTGCCTTTATAACCTTATGACAGAAGAAGAACTTGTGTGAGAAGTTGGGACCTCGATGGAGCACGAGGGAAATTGAGATTTTTTATGAAGCGTACAGAAAATATGGACAAGACTGGAAAAAGGTACGTCTGTTTATAACACTTCAACTAGTTCTCTCAATATTTTGTATTCTGTTGTGCACCATATCTCATAAATCTTATGTTCTTATATATTTTTAATTATTTTCCTCTTTAACGTTTTCAGGTGGCTTCTTCTACGTATGGTAGATCAATTGAGATGGTAGAGGCTCTTTACAATATGAACAGGGTATGCAAAGTCCTTATATGCTAGCAAATTCTAACGGTTACCTTTATGATGTGCTTTCTCCCCCTCCGCTGACTACATGAGCAATATTTTAATATTATTTAAGCGCTTAATGTTGCAATGTTGCTCTTTTTTTTTTTTTTCCTTTTTCTTTTATATAAGTTGACTTCTTCCTTTTTGTATATGTACATGTCGTGACTATTGGCTTTCTTCTCACTGATAATTGTTGTTTCCTATGCTAATTTCCTCAATGGTTCACAGAATTTTTATAGACTAGTGTTGGTTCATTTAATCAGTAATTATGATTGAATTGCACTGTTTGTCAACTTTGCATTGGTAAGTGCCTAACTTTTGGGTTTTCTTCAATGGAGAGCCTTCAGGCAAAATCACAAGCTTCAGGGGCTTAGATAAGTGTCTCTTTCTTATCTTCTTGTTGATATCTTCATCAAGGGGGCTAAGGGAAAAACGTAATTGAGGATAACTAAATGTGAGGGTAAGGTCTTACTCATTTCTGCTTCGAAAATGACGAGATTTATTCTTGGTATTGAGTAGATGTTTGAAGCTCATGAAGATTATTTTTGTGTTCAATCGTTTTATGGGCTTGGATTCGACAATTCCGTCTTAGTTTGTCTCGAGTTGTGACTTTGGGTTGATTGATGATTTAACAGGATTATTTCTCAAGAGGAGTTTTAAGGTTATTTTAATCAATATGGTTTATACTCCAATGATTGGAACGCAAAAGTTGTTGCCTTGTTGGAGCTTTTTAAATTTGCTTGACTTCCTTAGTTCAAGCTTTAGTTTCCCTTTCTTTTGATGATAGGAAGCATTTTCTCTTTAGGAGGATAAGTTCATTGCTGCCTCCCTCTTCTTAGCAGTTTTCCCTCGTCTTTACTGTCCCATCTCATTGAAATGGAAGCCTATTATCTCTTTATCCTATCCTTTGATCAATTTGAATTTCAAAAGTAATAAGGACTTCCAGGTTGACTTTCCTTTTGCTATTCCTCAATTGGTTCCATTCTAATCTGGTGGATAAAAGAGTTGGGGTTTTAATACATTTTGTTCTTTTACTTTTCCTTAGGACTAGTTGATTGCCTTTCTTCACAATAATTTTCCTTCACTCTTTAAATGGTGAAGTTTTCTTTTAGTAACTGATAAGCTATGCAATACAATTTTCGTTGGTCCTTAATTAGCTGCTTTTGATTTTGTTATGCCTTTGCTTTCCAGGCATATCTTTCCTTGCCGGAGGGGACTGCATCTGTTGTTGGTCTCATAGCGCCGATGACAGATTACTATAATGTTATGGTGAGCGTGTATTATGTTTTTATTGTCATAAACATAAAATCTTTACTGAATGTCTTAATTGGGCCTTGTTTGTGTCTCTTTCACGTCTTTGGTTTGTTGTTTTGATTAAAAAACAGATAGGTTTATGTCTAGTTCCATTAAACAAGTCCAGCTACCAAAGCAATCATGTATATGTAAAGTAAAAGGATGGACGCTTCAAAGTTCCGAAGGGCTGAAGTAATAAGAACCATTTCTTTAAATTTTTTGAGGGACAAGTCCAAAACAATAGATTTCTTCAAGAGTATTAAGACTTGAGAAATTCTCACTGGAGCTAAATAAAAGATAACTCTGAAGTTCAAATATTTCTAGAATGGTTTTAAATGTTTTCTAAGATCATCCAATATAGCTCTATTGTTAGTGTTGATATACCTTGAATATTCCCTTGTCAACAATGTTACACTTATTTACATTTCCTTCAGCAAGTTATCATTGAAACTCTACAATTTGATACATTCAATCCTTTTGTGAATGCCTACTCAATTTGGTCTTGCACCTTCCAGCATTACCTCTCGTTTCAAAATTCTCACCAAGGAGTTGCTTTAGATGGAAAGGAAAGTTGGAGACTTCAAGTGGAAAAAATCTGGTTTAGCTTTCAAGGATTTTTTCTTATTGTTTATGACGTGTAAACACTAATGGTTGAGAGAATGAGAATACTCTATTCCATTCACTAAAGAAATAAATATATACACGTGTACAAGATTAACTTAAGTAGGACGGACAAACACAACTAATATACTAACAAAATTATAAATTTACTAATATGAAAATTATAACACTCTCCCTCAAGTTAGAGCATATCTATTCATCATGCCCAACTTGTTAGAGAGATAATCTATTTTGGCTCCATTCAATGCTTTTGTGAAGATATGCCCTAATCGTTCAACATTCTTCACATATCTTTTGATACCAAACCTTGTTGTATCTTTTCATGTATAAAAGGACAGCTGACCTCGATGTGTTTAGTCGGTGTTGTAGATCAGATCCCAGTTCAATAAGAAGTTGACGTATCCATAATAATTTACATATAAGTTGTGGCATCCCTTTTTATTCTAATTCAATGCTCGAAAGTGACACCACTTTTTGTTTCTTACTCTTCCAAGAAACCAGGTTACCACCCACAAATACACAATATTTTGAAGTTTATCTTCTATCTTTCTTAGAACCTGCCCAATCAGCATGTAACAACACTCTATCTGATGATCTTTGTTTATAAACTGCAACTGCAATGTAACAACACTTCGTTCAATTTTTTTTGTCAATTCATTTGCTTAGAAATTTTAATATAGTCAATTGGTAAATTGACAGGAAGGTAGAGATAGTGAACGTGATAATTATCATGCTTCAGGTTTTCAAGAATCTCCAAAGACTAATCAAGGAAAAGTTCAAATGAGTTTCTCAAATGAAGACTATTGTACTAGTCATTCAGTTGCAGCAAATGGTGGATGTCTGTCTTTGCTTAGGAGTTTATATAATGGTAAGACAATATTGAAATGCTATTGTGCATGAGGGGCTGTTTTCCATGTTTTTGTTTATGATTTTATTGGTAACTAATATATTTATAGGGCCTGCATCTCATAGAGGCTTGAAAATCTATGTTTTCTCACCTGAAGAGCTCTAA

mRNA sequence

GTTAATCGACGGATAAGCCAGAAGAAGAACTTGTGTGAGAAGTTGGGACCTCGATGGAGCACGAGGGAAATTGAGATTTTTTATGAAGCGTACAGAAAATATGGACAAGACTGGAAAAAGGTGGCTTCTTCTACGTATGGTAGATCAATTGAGATGGTAGAGGCTCTTTACAATATGAACAGGGAGGATAAGTTCATTGCTGCCTCCCTCTTCTTAGCAGTTTTCCCTCGTCTTTACTGTCCCATCTCATTGAAATGGAAGCCTATTATCTCTTTATCCTATCCTTTGATCAATTTGAATTTCAAAAGTAATAAGGACTTCCAGGCATATCTTTCCTTGCCGGAGGGGACTGCATCTGTTGTTGGTCTCATAGCGCCGATGACAGATTACTATAATGTTATGGAAGGTAGAGATAGTGAACGTGATAATTATCATGCTTCAGGTTTTCAAGAATCTCCAAAGACTAATCAAGGAAAAGTTCAAATGAGTTTCTCAAATGAAGACTATTGTACTAGTCATTCAGTTGCAGCAAATGGTGGATGTCTGTCTTTGCTTAGGAGTTTATATAATGGGCCTGCATCTCATAGAGGCTTGAAAATCTATGTTTTCTCACCTGAAGAGCTCTAA

Coding sequence (CDS)

GTTAATCGACGGATAAGCCAGAAGAAGAACTTGTGTGAGAAGTTGGGACCTCGATGGAGCACGAGGGAAATTGAGATTTTTTATGAAGCGTACAGAAAATATGGACAAGACTGGAAAAAGGTGGCTTCTTCTACGTATGGTAGATCAATTGAGATGGTAGAGGCTCTTTACAATATGAACAGGGAGGATAAGTTCATTGCTGCCTCCCTCTTCTTAGCAGTTTTCCCTCGTCTTTACTGTCCCATCTCATTGAAATGGAAGCCTATTATCTCTTTATCCTATCCTTTGATCAATTTGAATTTCAAAAGTAATAAGGACTTCCAGGCATATCTTTCCTTGCCGGAGGGGACTGCATCTGTTGTTGGTCTCATAGCGCCGATGACAGATTACTATAATGTTATGGAAGGTAGAGATAGTGAACGTGATAATTATCATGCTTCAGGTTTTCAAGAATCTCCAAAGACTAATCAAGGAAAAGTTCAAATGAGTTTCTCAAATGAAGACTATTGTACTAGTCATTCAGTTGCAGCAAATGGTGGATGTCTGTCTTTGCTTAGGAGTTTATATAATGGGCCTGCATCTCATAGAGGCTTGAAAATCTATGTTTTCTCACCTGAAGAGCTCTAA

Protein sequence

VNRRISQKKNLCEKLGPRWSTREIEIFYEAYRKYGQDWKKVASSTYGRSIEMVEALYNMNREDKFIAASLFLAVFPRLYCPISLKWKPIISLSYPLINLNFKSNKDFQAYLSLPEGTASVVGLIAPMTDYYNVMEGRDSERDNYHASGFQESPKTNQGKVQMSFSNEDYCTSHSVAANGGCLSLLRSLYNGPASHRGLKIYVFSPEEL

Homology

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BLAST of Carg17540 vs. NCBI nr
Match: KAG7021102.1 (Protein ALWAYS EARLY 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 426.8 bits (1096), Expect = 1.1e-115
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0


Query: 1   VNRRISQKKNLCEKLGPRWSTREIEIFYEAYRKYGQDWKKVASSTYGRSIEMVEALYNMN 60
           VNRRISQKKNLCEKLGPRWSTREIEIFYEAYRKYGQDWKKVASSTYGRSIEMVEALYNMN
Sbjct: 1   VNRRISQKKNLCEKLGPRWSTREIEIFYEAYRKYGQDWKKVASSTYGRSIEMVEALYNMN 60

Query: 61  REDKFIAASLFLAVFPRLYCPISLKWKPIISLSYPLINLNFKSNKDFQAYLSLPEGTASV 120
           REDKFIAASLFLAVFPRLYCPISLKWKPIISLSYPLINLNFKSNKDFQAYLSLPEGTASV
Sbjct: 61  REDKFIAASLFLAVFPRLYCPISLKWKPIISLSYPLINLNFKSNKDFQAYLSLPEGTASV 120

Query: 121 VGLIAPMTDYYNVMEGRDSERDNYHASGFQESPKTNQGKVQMSFSNEDYCTSHSVAANGG 180
           VGLIAPMTDYYNVMEGRDSERDNYHASGFQESPKTNQGKVQMSFSNEDYCTSHSVAANGG
Sbjct: 121 VGLIAPMTDYYNVMEGRDSERDNYHASGFQESPKTNQGKVQMSFSNEDYCTSHSVAANGG 180

Query: 181 CLSLLRSLYNGPASHRGLKIYVFSPEEL 209
           CLSLLRSLYNGPASHRGLKIYVFSPEEL
Sbjct: 181 CLSLLRSLYNGPASHRGLKIYVFSPEEL 208

[Close]

BLAST of Carg17540 vs. NCBI nr
Match: XP_022937463.1 (protein ALWAYS EARLY 2-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 262.3 bits (669), Expect = 3.5e-66
Identity = 138/189 (73.02%), Postives = 139/189 (73.54%), Query Frame = 0


Query: 3   RRISQKKNLCEKLGPRWSTREIEIFYEAYRKYGQDWKKVASSTYGRSIEMVEALYNMNRE 62
           R   +KKNLCEKLGPRWSTREIEIFYEAYRKYGQDWKKVASSTYGRSIEMVEALYNMNR 
Sbjct: 31  RSKKRKKNLCEKLGPRWSTREIEIFYEAYRKYGQDWKKVASSTYGRSIEMVEALYNMNR- 90

Query: 63  DKFIAASLFLAVFPRLYCPISLKWKPIISLSYPLINLNFKSNKDFQAYLSLPEGTASVVG 122
                                                         AYLSLPEGTASVVG
Sbjct: 91  ----------------------------------------------AYLSLPEGTASVVG 150

Query: 123 LIAPMTDYYNVMEGRDSERDNYHASGFQESPKTNQGKVQMSFSNEDYCTSHSVAANGGCL 182
           LIAPMTDYYNVMEGRDSERDNYHASGFQESPKTNQGKVQMSFSNEDYCTSHSVAANGGCL
Sbjct: 151 LIAPMTDYYNVMEGRDSERDNYHASGFQESPKTNQGKVQMSFSNEDYCTSHSVAANGGCL 172

Query: 183 SLLRSLYNG 192
           SLLRSLYNG
Sbjct: 211 SLLRSLYNG 172

[Close]

BLAST of Carg17540 vs. NCBI nr
Match: KAG6586258.1 (Protein ALWAYS EARLY 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 262.3 bits (669), Expect = 3.5e-66
Identity = 138/189 (73.02%), Postives = 139/189 (73.54%), Query Frame = 0


Query: 3   RRISQKKNLCEKLGPRWSTREIEIFYEAYRKYGQDWKKVASSTYGRSIEMVEALYNMNRE 62
           R   +KKNLCEKLGPRWSTREIEIFYEAYRKYGQDWKKVASSTYGRSIEMVEALYNMNR 
Sbjct: 31  RSKKRKKNLCEKLGPRWSTREIEIFYEAYRKYGQDWKKVASSTYGRSIEMVEALYNMNR- 90

Query: 63  DKFIAASLFLAVFPRLYCPISLKWKPIISLSYPLINLNFKSNKDFQAYLSLPEGTASVVG 122
                                                         AYLSLPEGTASVVG
Sbjct: 91  ----------------------------------------------AYLSLPEGTASVVG 150

Query: 123 LIAPMTDYYNVMEGRDSERDNYHASGFQESPKTNQGKVQMSFSNEDYCTSHSVAANGGCL 182
           LIAPMTDYYNVMEGRDSERDNYHASGFQESPKTNQGKVQMSFSNEDYCTSHSVAANGGCL
Sbjct: 151 LIAPMTDYYNVMEGRDSERDNYHASGFQESPKTNQGKVQMSFSNEDYCTSHSVAANGGCL 172

Query: 183 SLLRSLYNG 192
           SLLRSLYNG
Sbjct: 211 SLLRSLYNG 172

[Close]

BLAST of Carg17540 vs. NCBI nr
Match: XP_022937461.1 (protein ALWAYS EARLY 2-like isoform X1 [Cucurbita moschata] >XP_022937462.1 protein ALWAYS EARLY 2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 262.3 bits (669), Expect = 3.5e-66
Identity = 138/189 (73.02%), Postives = 139/189 (73.54%), Query Frame = 0


Query: 3   RRISQKKNLCEKLGPRWSTREIEIFYEAYRKYGQDWKKVASSTYGRSIEMVEALYNMNRE 62
           R   +KKNLCEKLGPRWSTREIEIFYEAYRKYGQDWKKVASSTYGRSIEMVEALYNMNR 
Sbjct: 31  RSKKRKKNLCEKLGPRWSTREIEIFYEAYRKYGQDWKKVASSTYGRSIEMVEALYNMNR- 90

Query: 63  DKFIAASLFLAVFPRLYCPISLKWKPIISLSYPLINLNFKSNKDFQAYLSLPEGTASVVG 122
                                                         AYLSLPEGTASVVG
Sbjct: 91  ----------------------------------------------AYLSLPEGTASVVG 150

Query: 123 LIAPMTDYYNVMEGRDSERDNYHASGFQESPKTNQGKVQMSFSNEDYCTSHSVAANGGCL 182
           LIAPMTDYYNVMEGRDSERDNYHASGFQESPKTNQGKVQMSFSNEDYCTSHSVAANGGCL
Sbjct: 151 LIAPMTDYYNVMEGRDSERDNYHASGFQESPKTNQGKVQMSFSNEDYCTSHSVAANGGCL 172

Query: 183 SLLRSLYNG 192
           SLLRSLYNG
Sbjct: 211 SLLRSLYNG 172

[Close]

BLAST of Carg17540 vs. NCBI nr
Match: XP_022965561.1 (protein ALWAYS EARLY 2 isoform X1 [Cucurbita maxima] >XP_022965562.1 protein ALWAYS EARLY 2 isoform X1 [Cucurbita maxima])

HSP 1 Score: 251.5 bits (641), Expect = 6.2e-63
Identity = 133/189 (70.37%), Postives = 137/189 (72.49%), Query Frame = 0


Query: 3   RRISQKKNLCEKLGPRWSTREIEIFYEAYRKYGQDWKKVASSTYGRSIEMVEALYNMNRE 62
           R   +KKNLCEKLGP+WS REIEIFYEAYRKYGQDWK+VASSTYGRSIEMVEALYNMNR 
Sbjct: 31  RSKKRKKNLCEKLGPQWSMREIEIFYEAYRKYGQDWKRVASSTYGRSIEMVEALYNMNR- 90

Query: 63  DKFIAASLFLAVFPRLYCPISLKWKPIISLSYPLINLNFKSNKDFQAYLSLPEGTASVVG 122
                                                         AYLSLPEGTASVVG
Sbjct: 91  ----------------------------------------------AYLSLPEGTASVVG 150

Query: 123 LIAPMTDYYNVMEGRDSERDNYHASGFQESPKTNQGKVQMSFSNEDYCTSHSVAANGGCL 182
           LIA MTDYYNVMEGRDSERDNYHASGFQESPKTNQGKVQMSFSNEDYCTSHSVAANGGCL
Sbjct: 151 LIALMTDYYNVMEGRDSERDNYHASGFQESPKTNQGKVQMSFSNEDYCTSHSVAANGGCL 172

Query: 183 SLLRSLYNG 192
           SLLRSLY+G
Sbjct: 211 SLLRSLYHG 172

[Close]

BLAST of Carg17540 vs. ExPASy Swiss-Prot
Match: Q6A333 (Protein ALWAYS EARLY 2 OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 7.0e-25
Identity = 73/191 (38.22%), Postives = 101/191 (52.88%), Query Frame = 0


Query: 8   KKNLCEKLGPRWSTREIEIFYEAYRKYGQDWKKVASS-TYGRSIEMVEALYNMNREDKFI 67
           +K L +KLGP+W+  E+E FY+AYRK+GQ+W++VA++    RS++MVEAL+NMNR     
Sbjct: 33  RKKLSDKLGPQWTRLELERFYDAYRKHGQEWRRVAAAIRNSRSVDMVEALFNMNR----- 92

Query: 68  AASLFLAVFPRLYCPISLKWKPIISLSYPLINLNFKSNKDFQAYLSLPEGTASVVGLIAP 127
                                                     AYLSLPEGTASV GLIA 
Sbjct: 93  ------------------------------------------AYLSLPEGTASVAGLIAM 152

Query: 128 MTDYYNVMEGRDSERDNYHASGF-QESPKTNQGKVQMSFSNEDYCTSHSVAANGGCLSLL 187
           MTD+Y+VMEG  SE + + AS   ++  K  + K Q S S E+     S+ +  GCL+ L
Sbjct: 153 MTDHYSVMEGSGSEGEGHDASEVPRKQQKRKRAKPQRSDSPEEVDIQQSIGSPDGCLTFL 176

Query: 188 R-SLYNGPASH 196
           + +  NG   H
Sbjct: 213 KQARANGTQRH 176

[Close]

BLAST of Carg17540 vs. ExPASy Swiss-Prot
Match: Q6A331 (Protein ALWAYS EARLY 1 OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=2 SV=2)

HSP 1 Score: 114.0 bits (284), Expect = 2.0e-24
Identity = 74/182 (40.66%), Postives = 97/182 (53.30%), Query Frame = 0


Query: 7   QKKNLCEKLGPRWSTREIEIFYEAYRKYGQDWKKVASST-YGRSIEMVEALYNMNREDKF 66
           +KK L +KLGP+W+ RE+  FY+AYRKY  DWKKVA++    RS+EMVE L+ MNR    
Sbjct: 33  RKKKLADKLGPQWTKRELVRFYDAYRKYVGDWKKVAAAVRNNRSVEMVETLFCMNR---- 92

Query: 67  IAASLFLAVFPRLYCPISLKWKPIISLSYPLINLNFKSNKDFQAYLSLPEGTASVVGLIA 126
                                                      AYLSLPEGTASV GLIA
Sbjct: 93  -------------------------------------------AYLSLPEGTASVAGLIA 152

Query: 127 PMTDYYNVMEGRDSERDNYHASGF-QESPKTNQGKVQMSFSNEDYCTSHSVAANGGCLSL 186
            MTD+Y+VMEG +SE +++ AS   ++  K  + +V  S   E+    HSVA+  GCLS 
Sbjct: 153 MMTDHYSVMEGSESEGEDHDASEVTRKHLKRKRPQVLPSDFREEVVPPHSVASVEGCLSF 167

[Close]

BLAST of Carg17540 vs. ExPASy Swiss-Prot
Match: Q6A332 (Protein ALWAYS EARLY 3 OS=Arabidopsis thaliana OX=3702 GN=ALY3 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.8e-20
Identity = 58/138 (42.03%), Postives = 73/138 (52.90%), Query Frame = 0


Query: 7   QKKNLCEKLGPRWSTREIEIFYEAYRKYGQDWKKVASSTYGRSIEMVEALYNMNREDKFI 66
           +K+ L + LGP+WS  E+E FYE YRK+G++WKKVA   + RS EMVEALY MN+     
Sbjct: 35  RKRKLSDMLGPQWSKEELERFYEGYRKFGKEWKKVAGFVHSRSAEMVEALYTMNK----- 94

Query: 67  AASLFLAVFPRLYCPISLKWKPIISLSYPLINLNFKSNKDFQAYLSLPEGTASVVGLIAP 126
                                                     AYLSLPEGTASVVGL A 
Sbjct: 95  ------------------------------------------AYLSLPEGTASVVGLTAM 125

Query: 127 MTDYYNVME-GRDSERDN 144
           MTD+Y+V+  G DSE++N
Sbjct: 155 MTDHYSVLHGGSDSEQEN 125

[Close]

BLAST of Carg17540 vs. ExPASy TrEMBL
Match: A0A6J1FB98 (protein ALWAYS EARLY 2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443867 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.7e-66
Identity = 138/189 (73.02%), Postives = 139/189 (73.54%), Query Frame = 0


Query: 3   RRISQKKNLCEKLGPRWSTREIEIFYEAYRKYGQDWKKVASSTYGRSIEMVEALYNMNRE 62
           R   +KKNLCEKLGPRWSTREIEIFYEAYRKYGQDWKKVASSTYGRSIEMVEALYNMNR 
Sbjct: 31  RSKKRKKNLCEKLGPRWSTREIEIFYEAYRKYGQDWKKVASSTYGRSIEMVEALYNMNR- 90

Query: 63  DKFIAASLFLAVFPRLYCPISLKWKPIISLSYPLINLNFKSNKDFQAYLSLPEGTASVVG 122
                                                         AYLSLPEGTASVVG
Sbjct: 91  ----------------------------------------------AYLSLPEGTASVVG 150

Query: 123 LIAPMTDYYNVMEGRDSERDNYHASGFQESPKTNQGKVQMSFSNEDYCTSHSVAANGGCL 182
           LIAPMTDYYNVMEGRDSERDNYHASGFQESPKTNQGKVQMSFSNEDYCTSHSVAANGGCL
Sbjct: 151 LIAPMTDYYNVMEGRDSERDNYHASGFQESPKTNQGKVQMSFSNEDYCTSHSVAANGGCL 172

Query: 183 SLLRSLYNG 192
           SLLRSLYNG
Sbjct: 211 SLLRSLYNG 172

[Close]

BLAST of Carg17540 vs. ExPASy TrEMBL
Match: A0A6J1FG45 (protein ALWAYS EARLY 2-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443867 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.7e-66
Identity = 138/189 (73.02%), Postives = 139/189 (73.54%), Query Frame = 0


Query: 3   RRISQKKNLCEKLGPRWSTREIEIFYEAYRKYGQDWKKVASSTYGRSIEMVEALYNMNRE 62
           R   +KKNLCEKLGPRWSTREIEIFYEAYRKYGQDWKKVASSTYGRSIEMVEALYNMNR 
Sbjct: 31  RSKKRKKNLCEKLGPRWSTREIEIFYEAYRKYGQDWKKVASSTYGRSIEMVEALYNMNR- 90

Query: 63  DKFIAASLFLAVFPRLYCPISLKWKPIISLSYPLINLNFKSNKDFQAYLSLPEGTASVVG 122
                                                         AYLSLPEGTASVVG
Sbjct: 91  ----------------------------------------------AYLSLPEGTASVVG 150

Query: 123 LIAPMTDYYNVMEGRDSERDNYHASGFQESPKTNQGKVQMSFSNEDYCTSHSVAANGGCL 182
           LIAPMTDYYNVMEGRDSERDNYHASGFQESPKTNQGKVQMSFSNEDYCTSHSVAANGGCL
Sbjct: 151 LIAPMTDYYNVMEGRDSERDNYHASGFQESPKTNQGKVQMSFSNEDYCTSHSVAANGGCL 172

Query: 183 SLLRSLYNG 192
           SLLRSLYNG
Sbjct: 211 SLLRSLYNG 172

[Close]

BLAST of Carg17540 vs. ExPASy TrEMBL
Match: A0A6J1HKN4 (protein ALWAYS EARLY 2 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465426 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 3.0e-63
Identity = 133/189 (70.37%), Postives = 137/189 (72.49%), Query Frame = 0


Query: 3   RRISQKKNLCEKLGPRWSTREIEIFYEAYRKYGQDWKKVASSTYGRSIEMVEALYNMNRE 62
           R   +KKNLCEKLGP+WS REIEIFYEAYRKYGQDWK+VASSTYGRSIEMVEALYNMNR 
Sbjct: 31  RSKKRKKNLCEKLGPQWSMREIEIFYEAYRKYGQDWKRVASSTYGRSIEMVEALYNMNR- 90

Query: 63  DKFIAASLFLAVFPRLYCPISLKWKPIISLSYPLINLNFKSNKDFQAYLSLPEGTASVVG 122
                                                         AYLSLPEGTASVVG
Sbjct: 91  ----------------------------------------------AYLSLPEGTASVVG 150

Query: 123 LIAPMTDYYNVMEGRDSERDNYHASGFQESPKTNQGKVQMSFSNEDYCTSHSVAANGGCL 182
           LIA MTDYYNVMEGRDSERDNYHASGFQESPKTNQGKVQMSFSNEDYCTSHSVAANGGCL
Sbjct: 151 LIALMTDYYNVMEGRDSERDNYHASGFQESPKTNQGKVQMSFSNEDYCTSHSVAANGGCL 172

Query: 183 SLLRSLYNG 192
           SLLRSLY+G
Sbjct: 211 SLLRSLYHG 172

[Close]

BLAST of Carg17540 vs. ExPASy TrEMBL
Match: A0A6J1HPC9 (protein ALWAYS EARLY 2 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111465426 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 3.0e-63
Identity = 133/189 (70.37%), Postives = 137/189 (72.49%), Query Frame = 0


Query: 3   RRISQKKNLCEKLGPRWSTREIEIFYEAYRKYGQDWKKVASSTYGRSIEMVEALYNMNRE 62
           R   +KKNLCEKLGP+WS REIEIFYEAYRKYGQDWK+VASSTYGRSIEMVEALYNMNR 
Sbjct: 31  RSKKRKKNLCEKLGPQWSMREIEIFYEAYRKYGQDWKRVASSTYGRSIEMVEALYNMNR- 90

Query: 63  DKFIAASLFLAVFPRLYCPISLKWKPIISLSYPLINLNFKSNKDFQAYLSLPEGTASVVG 122
                                                         AYLSLPEGTASVVG
Sbjct: 91  ----------------------------------------------AYLSLPEGTASVVG 150

Query: 123 LIAPMTDYYNVMEGRDSERDNYHASGFQESPKTNQGKVQMSFSNEDYCTSHSVAANGGCL 182
           LIA MTDYYNVMEGRDSERDNYHASGFQESPKTNQGKVQMSFSNEDYCTSHSVAANGGCL
Sbjct: 151 LIALMTDYYNVMEGRDSERDNYHASGFQESPKTNQGKVQMSFSNEDYCTSHSVAANGGCL 172

Query: 183 SLLRSLYNG 192
           SLLRSLY+G
Sbjct: 211 SLLRSLYHG 172

[Close]

BLAST of Carg17540 vs. ExPASy TrEMBL
Match: A0A6J1DAY2 (protein ALWAYS EARLY 2-like isoform X6 OS=Momordica charantia OX=3673 GN=LOC111018789 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 9.7e-46
Identity = 105/186 (56.45%), Postives = 119/186 (63.98%), Query Frame = 0


Query: 6   SQKKNLCEKLGPRWSTREIEIFYEAYRKYGQDWKKVASSTYGRSIEMVEALYNMNREDKF 65
           +QKK L +KLGP+WS  EI+ FYE YRK+GQDW+KVASS Y RSIEMVEALYN N+    
Sbjct: 31  NQKKKLSDKLGPKWSKEEIKCFYEGYRKFGQDWEKVASSIYDRSIEMVEALYNTNK---- 90

Query: 66  IAASLFLAVFPRLYCPISLKWKPIISLSYPLINLNFKSNKDFQAYLSLPEGTASVVGLIA 125
                                                      AYLSLPEGTASVVGL A
Sbjct: 91  -------------------------------------------AYLSLPEGTASVVGLTA 150

Query: 126 PMTDYYNVMEGRDSERDNYHASGFQESPKTNQGKVQMSFSNEDYCTSHSVAANGGCLSLL 185
            MTDYY+VM G DSER+NY ASGFQ+ PKTNQGKV+MS SNED+ T+HSV A+GGCLS L
Sbjct: 151 LMTDYYHVMGGSDSERENYDASGFQKLPKTNQGKVKMSVSNEDHLTTHSVTASGGCLSSL 169

Query: 186 RSLYNG 192
           RSLY G
Sbjct: 211 RSLYYG 169

[Close]

BLAST of Carg17540 vs. TAIR 10
Match: AT3G05380.2 (DIRP ;Myb-like DNA-binding domain )

HSP 1 Score: 117.1 bits (292), Expect = 1.7e-26
Identity = 74/192 (38.54%), Postives = 102/192 (53.12%), Query Frame = 0


Query: 7   QKKNLCEKLGPRWSTREIEIFYEAYRKYGQDWKKVASS-TYGRSIEMVEALYNMNREDKF 66
           +KK L +KLGP+W+  E+E FY+AYRK+GQ+W++VA++    RS++MVEAL+NMNR    
Sbjct: 33  RKKKLSDKLGPQWTRLELERFYDAYRKHGQEWRRVAAAIRNSRSVDMVEALFNMNR---- 92

Query: 67  IAASLFLAVFPRLYCPISLKWKPIISLSYPLINLNFKSNKDFQAYLSLPEGTASVVGLIA 126
                                                      AYLSLPEGTASV GLIA
Sbjct: 93  -------------------------------------------AYLSLPEGTASVAGLIA 152

Query: 127 PMTDYYNVMEGRDSERDNYHASGF-QESPKTNQGKVQMSFSNEDYCTSHSVAANGGCLSL 186
            MTD+Y+VMEG  SE + + AS   ++  K  + K Q S S E+     S+ +  GCL+ 
Sbjct: 153 MMTDHYSVMEGSGSEGEGHDASEVPRKQQKRKRAKPQRSDSPEEVDIQQSIGSPDGCLTF 177

Query: 187 LR-SLYNGPASH 196
           L+ +  NG   H
Sbjct: 213 LKQARANGTQRH 177

[Close]

BLAST of Carg17540 vs. TAIR 10
Match: AT3G05380.5 (DIRP ;Myb-like DNA-binding domain )

HSP 1 Score: 117.1 bits (292), Expect = 1.7e-26
Identity = 74/192 (38.54%), Postives = 102/192 (53.12%), Query Frame = 0


Query: 7   QKKNLCEKLGPRWSTREIEIFYEAYRKYGQDWKKVASS-TYGRSIEMVEALYNMNREDKF 66
           +KK L +KLGP+W+  E+E FY+AYRK+GQ+W++VA++    RS++MVEAL+NMNR    
Sbjct: 33  RKKKLSDKLGPQWTRLELERFYDAYRKHGQEWRRVAAAIRNSRSVDMVEALFNMNR---- 92

Query: 67  IAASLFLAVFPRLYCPISLKWKPIISLSYPLINLNFKSNKDFQAYLSLPEGTASVVGLIA 126
                                                      AYLSLPEGTASV GLIA
Sbjct: 93  -------------------------------------------AYLSLPEGTASVAGLIA 152

Query: 127 PMTDYYNVMEGRDSERDNYHASGF-QESPKTNQGKVQMSFSNEDYCTSHSVAANGGCLSL 186
            MTD+Y+VMEG  SE + + AS   ++  K  + K Q S S E+     S+ +  GCL+ 
Sbjct: 153 MMTDHYSVMEGSGSEGEGHDASEVPRKQQKRKRAKPQRSDSPEEVDIQQSIGSPDGCLTF 177

Query: 187 LR-SLYNGPASH 196
           L+ +  NG   H
Sbjct: 213 LKQARANGTQRH 177

[Close]

BLAST of Carg17540 vs. TAIR 10
Match: AT3G05380.4 (DIRP ;Myb-like DNA-binding domain )

HSP 1 Score: 117.1 bits (292), Expect = 1.7e-26
Identity = 74/192 (38.54%), Postives = 102/192 (53.12%), Query Frame = 0


Query: 7   QKKNLCEKLGPRWSTREIEIFYEAYRKYGQDWKKVASS-TYGRSIEMVEALYNMNREDKF 66
           +KK L +KLGP+W+  E+E FY+AYRK+GQ+W++VA++    RS++MVEAL+NMNR    
Sbjct: 33  RKKKLSDKLGPQWTRLELERFYDAYRKHGQEWRRVAAAIRNSRSVDMVEALFNMNR---- 92

Query: 67  IAASLFLAVFPRLYCPISLKWKPIISLSYPLINLNFKSNKDFQAYLSLPEGTASVVGLIA 126
                                                      AYLSLPEGTASV GLIA
Sbjct: 93  -------------------------------------------AYLSLPEGTASVAGLIA 152

Query: 127 PMTDYYNVMEGRDSERDNYHASGF-QESPKTNQGKVQMSFSNEDYCTSHSVAANGGCLSL 186
            MTD+Y+VMEG  SE + + AS   ++  K  + K Q S S E+     S+ +  GCL+ 
Sbjct: 153 MMTDHYSVMEGSGSEGEGHDASEVPRKQQKRKRAKPQRSDSPEEVDIQQSIGSPDGCLTF 177

Query: 187 LR-SLYNGPASH 196
           L+ +  NG   H
Sbjct: 213 LKQARANGTQRH 177

[Close]

BLAST of Carg17540 vs. TAIR 10
Match: AT3G05380.1 (DIRP ;Myb-like DNA-binding domain )

HSP 1 Score: 115.5 bits (288), Expect = 5.0e-26
Identity = 73/191 (38.22%), Postives = 101/191 (52.88%), Query Frame = 0


Query: 8   KKNLCEKLGPRWSTREIEIFYEAYRKYGQDWKKVASS-TYGRSIEMVEALYNMNREDKFI 67
           +K L +KLGP+W+  E+E FY+AYRK+GQ+W++VA++    RS++MVEAL+NMNR     
Sbjct: 33  RKKLSDKLGPQWTRLELERFYDAYRKHGQEWRRVAAAIRNSRSVDMVEALFNMNR----- 92

Query: 68  AASLFLAVFPRLYCPISLKWKPIISLSYPLINLNFKSNKDFQAYLSLPEGTASVVGLIAP 127
                                                     AYLSLPEGTASV GLIA 
Sbjct: 93  ------------------------------------------AYLSLPEGTASVAGLIAM 152

Query: 128 MTDYYNVMEGRDSERDNYHASGF-QESPKTNQGKVQMSFSNEDYCTSHSVAANGGCLSLL 187
           MTD+Y+VMEG  SE + + AS   ++  K  + K Q S S E+     S+ +  GCL+ L
Sbjct: 153 MTDHYSVMEGSGSEGEGHDASEVPRKQQKRKRAKPQRSDSPEEVDIQQSIGSPDGCLTFL 176

Query: 188 R-SLYNGPASH 196
           + +  NG   H
Sbjct: 213 KQARANGTQRH 176

[Close]

BLAST of Carg17540 vs. TAIR 10
Match: AT5G27610.1 (DIRP ;Myb-like DNA-binding domain )

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-25
Identity = 74/182 (40.66%), Postives = 97/182 (53.30%), Query Frame = 0


Query: 7   QKKNLCEKLGPRWSTREIEIFYEAYRKYGQDWKKVASST-YGRSIEMVEALYNMNREDKF 66
           +KK L +KLGP+W+ RE+  FY+AYRKY  DWKKVA++    RS+EMVE L+ MNR    
Sbjct: 33  RKKKLADKLGPQWTKRELVRFYDAYRKYVGDWKKVAAAVRNNRSVEMVETLFCMNR---- 92

Query: 67  IAASLFLAVFPRLYCPISLKWKPIISLSYPLINLNFKSNKDFQAYLSLPEGTASVVGLIA 126
                                                      AYLSLPEGTASV GLIA
Sbjct: 93  -------------------------------------------AYLSLPEGTASVAGLIA 152

Query: 127 PMTDYYNVMEGRDSERDNYHASGF-QESPKTNQGKVQMSFSNEDYCTSHSVAANGGCLSL 186
            MTD+Y+VMEG +SE +++ AS   ++  K  + +V  S   E+    HSVA+  GCLS 
Sbjct: 153 MMTDHYSVMEGSESEGEDHDASEVTRKHLKRKRPQVLPSDFREEVVPPHSVASVEGCLSF 167

The following BLAST results are available for this feature:

BLAST of Carg17540 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021102.1	1.1e-115	100.00	Protein ALWAYS EARLY 1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022937463.1	3.5e-66	73.02	protein ALWAYS EARLY 2-like isoform X2 [Cucurbita moschata]	[more]
KAG6586258.1	3.5e-66	73.02	Protein ALWAYS EARLY 3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022937461.1	3.5e-66	73.02	protein ALWAYS EARLY 2-like isoform X1 [Cucurbita moschata] >XP_022937462.1 prot...	[more]
XP_022965561.1	6.2e-63	70.37	protein ALWAYS EARLY 2 isoform X1 [Cucurbita maxima] >XP_022965562.1 protein ALW...	[more]

BLAST of Carg17540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6A333	7.0e-25	38.22	Protein ALWAYS EARLY 2 OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1	[more]
Q6A331	2.0e-24	40.66	Protein ALWAYS EARLY 1 OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=2 SV=2	[more]
Q6A332	1.8e-20	42.03	Protein ALWAYS EARLY 3 OS=Arabidopsis thaliana OX=3702 GN=ALY3 PE=1 SV=1	[more]

BLAST of Carg17540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FB98	1.7e-66	73.02	protein ALWAYS EARLY 2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A6J1FG45	1.7e-66	73.02	protein ALWAYS EARLY 2-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A6J1HKN4	3.0e-63	70.37	protein ALWAYS EARLY 2 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465426 PE...	[more]
A0A6J1HPC9	3.0e-63	70.37	protein ALWAYS EARLY 2 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111465426 PE...	[more]
A0A6J1DAY2	9.7e-46	56.45	protein ALWAYS EARLY 2-like isoform X6 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]

BLAST of Carg17540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05380.2	1.7e-26	38.54	DIRP ;Myb-like DNA-binding domain	[more]
AT3G05380.5	1.7e-26	38.54	DIRP ;Myb-like DNA-binding domain	[more]
AT3G05380.4	1.7e-26	38.54	DIRP ;Myb-like DNA-binding domain	[more]
AT3G05380.1	5.0e-26	38.22	DIRP ;Myb-like DNA-binding domain	[more]
AT5G27610.1	1.4e-25	40.66	DIRP ;Myb-like DNA-binding domain	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 18..54 e-value: 6.0E-6 score: 26.4
None	No IPR available	GENE3D	1.20.58.1880		coord: 2..69 e-value: 9.9E-8 score: 34.3
IPR028306	Protein ALWAYS EARLY, plant	PANTHER	PTHR21689:SF5	PROTEIN ALWAYS EARLY 1-RELATED	coord: 6..61
IPR028306	Protein ALWAYS EARLY, plant	PANTHER	PTHR21689:SF5	PROTEIN ALWAYS EARLY 1-RELATED	coord: 108..189
IPR010561	Protein LIN-9/Protein ALWAYS EARLY	PANTHER	PTHR21689	LIN-9	coord: 108..189
IPR010561	Protein LIN-9/Protein ALWAYS EARLY	PANTHER	PTHR21689	LIN-9	coord: 6..61
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 18..53 e-value: 7.52035E-5 score: 37.1698
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 17..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17540-RA	Carg17540-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0017053	transcription repressor complex