Carg17519 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg17519
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Heat shock protein DnaJ, cysteine-rich domain containing protein
Location	Carg_Chr12: 11396756 .. 11399014 (+)
RNA-Seq Expression	Carg17519
Synteny	Carg17519

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTTTATCCGGTTCGGGAGACTCTCTCAACTTCCTAGTTCACCAGCAATGGTACCACGGCAATTGCGAACAATCTTCACCGGCGCCGCCGTAATCTTCGGCGGAATTTTCACTCTTAGGTTCGCTTCCTTTCTCACTATCCAAACGCTCCGCCACACCGCCGAAGCCAAACGGGTAATTCATTTTTCTCTACGAATACACATCTTTCTTTAAAATTAAACTTGTATATCGGGAATGGAAGAAGGCTCGTTAATTCTGAAGCATTTCTTTGATACTATTCTATTCGGATTTTCAATTTTTCGGCAGAGAAAAATCGCTTTGCCCTGTAGGGCTTGTAGAGGAAAAGGATTCTATATTTGCAAATTATGCCGCGGAAATGCAGTCATTCAGTGGTCGCCATTGTCCGATCCTATTGCCATGAACCCCTGCGTGTGCCCGACTTGTGAGGGAAATAGGTTATACTTTTCACTCCCTTTGATCTCGCCTGCTGCTGCTTGTTAGAATTTCCGCAGGATTAGGTTAATGGCATTCCATTCTTTATGATTTACTCGCTAGATTGTATGTTCATGTCAAATCCTATCCAGAATCTCGAAAATGCGGAACCCTAAAATTGATTTTTGGGTTTTTGTTTGTTTGAGACAGAGTTTGTTGTCTATATATACATTAAAAGGTTAAGATTCTAGAGTTCTCTCTAATTTGGGCAGTTTCAAACTTGAAGGATTATATAGTAGAAAGCAAGCAAAATTTTGCTCCTTCTTAGGGAAATTCTCGGCTTCCCTCTCGAGTTTGATTCTGTTGATTTATGTTTTCTGGTGGTGATGTTCTTGTTTTACTGGATCATTTGATATTGCAGGGTGCAGCATTGCCTAAACTGCCTAGGAAAAGGATATGAAGTATGATTGACCTTGTAAGTTTCTCATATTGTAAGTGAAGTGATTTACCTTTGCATTGTATTAGTTCTTGGTGAGATTTTTCACTTGATTATAGTAATCTTATGGATGATCTGGCTCTAGTTGTATTTCATCGTCATTTTAACGAGAATGCTTTGTAGTTTATGTTAGAAATCATGACCTCCGGTGTTAAGGGCATGACTCTGATACCATATTAGGAATTACAACCTCCATAATGGTATTATATTATCCACTTTGAGCATAAGCCCTCATGGTTTTGCTTTTGGTTTCCCCAAAAGGCTTCATGCCAATGGAGATATATTCATTACTTATAAACCCATGATCATCCCCTTAATTAGCCAACGTGGGACTCCTTCCCGATAATCCTCAACAGTTTATGCTTTTAACCATCATATACACTTCGCAATGCAGTAAGAGATTTGACTAGACGTTAGGAATCACAACCTCTGTAATGGTATTATATTCTCCACTTTGAGCATAAGCTCTCATGGTTTTGTTTTTGGTTTCCCCAAAAAGGCCTCGTACTAATGGAGATATATTGATTACTTATAAACCCATTATCATCCCCTTAATTAGCCAATGTGGGACTCTTTCCCGACAATCCTCAAAAAAAGGCCTCGTACCAATGGAGATATATTCATTACTTATAAACCCACTATCATCCCCTTAATTAGCCAATGTGGGACTCTTTCCCGACAATCCTCAACCGTTTATGCTTTTAACCATCATATACACTTGGCAATGCAGTAAGAGATTTGAGTAGACGTTATGGCGGTAAAAACTTGTATTTGTCTCCTTACTGAGATATTAAGCATTAGACAGTTTTAGTTGTAAGAACATGTTAAGTGACCTGCCTGCTTTAAATATGAACATGTAGAGCTTGTTTTAAGTCCATTCTTTCATGTTTTTGCTGGAAAACTTAGAATGTTTCAAAACAAATGCAATAAGTTGCTTAAAGTATACTGCAAACGTCGATAGGGGACGACCAGTTTGACTCGATCTATCCCATGTAATGCAATTGCAGGTGTAAATTCCATCAGAAATCGGCGAAAATACGAATGAACGATCGAAAGGTGTCTCTTTCAGCTGAAGAAAGGTCATTTCATTGCTTAAACTGCCATCCACACCTCAGTTATTTGCATATAAGGTTACTTGTGATTGTGAAATCTTTGAGATTGTTCATTCTTTCATGATTAAAGTATATGTTGGCAGAGCATTCACAGTTCCATTGCTTGTTCTTCTTTTTAGTTTGGTGGGTGGAAAGTTAATCTGACAAGCTTGAATCATGTGATGGAATGGAAGAAGACAAGTTGTTTTTAGGTAGAAAAACATGTAAAATGGTCTCTCT

mRNA sequence

TATTTTATCCGGTTCGGGAGACTCTCTCAACTTCCTAGTTCACCAGCAATGGTACCACGGCAATTGCGAACAATCTTCACCGGCGCCGCCGTAATCTTCGGCGGAATTTTCACTCTTAGGTTCGCTTCCTTTCTCACTATCCAAACGCTCCGCCACACCGCCGAAGCCAAACGGAGAAAAATCGCTTTGCCCTGTAGGGCTTGTAGAGGAAAAGGATTCTATATTTGCAAATTATGCCGCGGAAATGCAGTCATTCAGTGGTCGCCATTGTCCGATCCTATTGCCATGAACCCCTGCGTGTGCCCGACTTGTGAGGGAAATAGGGTGCAGCATTGCCTAAACTGCCTAGGAAAAGGATATGAAGTATGATTGACCTTGTGTAAATTCCATCAGAAATCGGCGAAAATACGAATGAACGATCGAAAGGTGTCTCTTTCAGCTGAAGAAAGGTCATTTCATTGCTTAAACTGCCATCCACACCTCAGTTATTTGCATATAAGGTTACTTGTGATTGTGAAATCTTTGAGATTGTTCATTCTTTCATGATTAAAGTATATGTTGGCAGAGCATTCACAGTTCCATTGCTTGTTCTTCTTTTTAGTTTGGTGGGTGGAAAGTTAATCTGACAAGCTTGAATCATGTGATGGAATGGAAGAAGACAAGTTGTTTTTAGGTAGAAAAACATGTAAAATGGTCTCTCT

Coding sequence (CDS)

ATGGTACCACGGCAATTGCGAACAATCTTCACCGGCGCCGCCGTAATCTTCGGCGGAATTTTCACTCTTAGGTTCGCTTCCTTTCTCACTATCCAAACGCTCCGCCACACCGCCGAAGCCAAACGGAGAAAAATCGCTTTGCCCTGTAGGGCTTGTAGAGGAAAAGGATTCTATATTTGCAAATTATGCCGCGGAAATGCAGTCATTCAGTGGTCGCCATTGTCCGATCCTATTGCCATGAACCCCTGCGTGTGCCCGACTTGTGAGGGAAATAGGGTGCAGCATTGCCTAAACTGCCTAGGAAAAGGATATGAAGTATGA

Protein sequence

MVPRQLRTIFTGAAVIFGGIFTLRFASFLTIQTLRHTAEAKRRKIALPCRACRGKGFYICKLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRVQHCLNCLGKGYEV

Homology

[Close]

BLAST of Carg17519 vs. NCBI nr
Match: KAG7021261.1 (hypothetical protein SDJN02_17949 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 228.4 bits (581), Expect = 2.9e-56
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MVPRQLRTIFTGAAVIFGGIFTLRFASFLTIQTLRHTAEAKRRKIALPCRACRGKGFYIC 60
           MVPRQLRTIFTGAAVIFGGIFTLRFASFLTIQTLRHTAEAKRRKIALPCRACRGKGFYIC
Sbjct: 1   MVPRQLRTIFTGAAVIFGGIFTLRFASFLTIQTLRHTAEAKRRKIALPCRACRGKGFYIC 60

Query: 61  KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRVQHCLNCLGKGYEV 107
           KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRVQHCLNCLGKGYEV
Sbjct: 61  KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRVQHCLNCLGKGYEV 106

[Close]

BLAST of Carg17519 vs. NCBI nr
Match: KAG6586407.1 (hypothetical protein SDJN03_19140, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 226.5 bits (576), Expect = 1.1e-55
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MVPRQLRTIFTGAAVIFGGIFTLRFASFLTIQTLRHTAEAKRRKIALPCRACRGKGFYIC 60
           MVPRQLRTIFTGAAVIFGGIFTLRFASFLTIQTLRHTAEAKRRKIALPCRACRGKGFYIC
Sbjct: 1   MVPRQLRTIFTGAAVIFGGIFTLRFASFLTIQTLRHTAEAKRRKIALPCRACRGKGFYIC 60

Query: 61  KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRVQHCLNCLGKGYE 106
           KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRVQHCLNCLGKGYE
Sbjct: 61  KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRVQHCLNCLGKGYE 105

[Close]

BLAST of Carg17519 vs. NCBI nr
Match: XP_008457839.1 (PREDICTED: uncharacterized protein LOC103497424 [Cucumis melo])

HSP 1 Score: 209.9 bits (533), Expect = 1.1e-50
Identity = 98/106 (92.45%), Postives = 100/106 (94.34%), Query Frame = 0


Query: 1   MVPRQLRTIFTGAAVIFGGIFTLRFASFLTIQTLRHTAEAKRRKIALPCRACRGKGFYIC 60
           M+PRQLRTIFTGAAVI GGI TL  ASFLTIQTLR TAEAKRRKIALPC+ACRGKGFYIC
Sbjct: 1   MIPRQLRTIFTGAAVILGGICTLNLASFLTIQTLRLTAEAKRRKIALPCKACRGKGFYIC 60

Query: 61  KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRVQHCLNCLGKGYEV 107
           KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRVQ CLNCLGKGYEV
Sbjct: 61  KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRVQRCLNCLGKGYEV 106

[Close]

BLAST of Carg17519 vs. NCBI nr
Match: XP_022142951.1 (uncharacterized protein LOC111012944 [Momordica charantia])

HSP 1 Score: 209.9 bits (533), Expect = 1.1e-50
Identity = 97/106 (91.51%), Postives = 100/106 (94.34%), Query Frame = 0


Query: 1   MVPRQLRTIFTGAAVIFGGIFTLRFASFLTIQTLRHTAEAKRRKIALPCRACRGKGFYIC 60
           M+PRQLRT+FTGAAVI GGI TL FASFLTIQTLR TAEAKRRKIALPC+ACRGKGFYIC
Sbjct: 1   MIPRQLRTVFTGAAVILGGICTLNFASFLTIQTLRLTAEAKRRKIALPCKACRGKGFYIC 60

Query: 61  KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRVQHCLNCLGKGYEV 107
           KLCRGNAVI WSPLSDPIAMNPCVCPTCEGNRVQ CLNCLGKGYEV
Sbjct: 61  KLCRGNAVIHWSPLSDPIAMNPCVCPTCEGNRVQRCLNCLGKGYEV 106

[Close]

BLAST of Carg17519 vs. NCBI nr
Match: XP_038889623.1 (uncharacterized protein LOC120079492 [Benincasa hispida])

HSP 1 Score: 209.1 bits (531), Expect = 1.8e-50
Identity = 96/106 (90.57%), Postives = 101/106 (95.28%), Query Frame = 0


Query: 1   MVPRQLRTIFTGAAVIFGGIFTLRFASFLTIQTLRHTAEAKRRKIALPCRACRGKGFYIC 60
           M+P+QLRT+FTGAAVI GGI TL FASFLTIQTLR TAEAKRRKIALPC+ACRGKGFYIC
Sbjct: 1   MIPKQLRTVFTGAAVILGGICTLNFASFLTIQTLRLTAEAKRRKIALPCKACRGKGFYIC 60

Query: 61  KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRVQHCLNCLGKGYEV 107
           KLC+GNAVIQWSPLSDPIAMNPCVCPTCEGNRVQ CLNCLGKGYEV
Sbjct: 61  KLCQGNAVIQWSPLSDPIAMNPCVCPTCEGNRVQRCLNCLGKGYEV 106

[Close]

BLAST of Carg17519 vs. ExPASy TrEMBL
Match: A0A6J1CNQ8 (uncharacterized protein LOC111012944 OS=Momordica charantia OX=3673 GN=LOC111012944 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 5.1e-51
Identity = 97/106 (91.51%), Postives = 100/106 (94.34%), Query Frame = 0


Query: 1   MVPRQLRTIFTGAAVIFGGIFTLRFASFLTIQTLRHTAEAKRRKIALPCRACRGKGFYIC 60
           M+PRQLRT+FTGAAVI GGI TL FASFLTIQTLR TAEAKRRKIALPC+ACRGKGFYIC
Sbjct: 1   MIPRQLRTVFTGAAVILGGICTLNFASFLTIQTLRLTAEAKRRKIALPCKACRGKGFYIC 60

Query: 61  KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRVQHCLNCLGKGYEV 107
           KLCRGNAVI WSPLSDPIAMNPCVCPTCEGNRVQ CLNCLGKGYEV
Sbjct: 61  KLCRGNAVIHWSPLSDPIAMNPCVCPTCEGNRVQRCLNCLGKGYEV 106

[Close]

BLAST of Carg17519 vs. ExPASy TrEMBL
Match: A0A1S3C6K9 (uncharacterized protein LOC103497424 OS=Cucumis melo OX=3656 GN=LOC103497424 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 5.1e-51
Identity = 98/106 (92.45%), Postives = 100/106 (94.34%), Query Frame = 0


Query: 1   MVPRQLRTIFTGAAVIFGGIFTLRFASFLTIQTLRHTAEAKRRKIALPCRACRGKGFYIC 60
           M+PRQLRTIFTGAAVI GGI TL  ASFLTIQTLR TAEAKRRKIALPC+ACRGKGFYIC
Sbjct: 1   MIPRQLRTIFTGAAVILGGICTLNLASFLTIQTLRLTAEAKRRKIALPCKACRGKGFYIC 60

Query: 61  KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRVQHCLNCLGKGYEV 107
           KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRVQ CLNCLGKGYEV
Sbjct: 61  KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRVQRCLNCLGKGYEV 106

[Close]

BLAST of Carg17519 vs. ExPASy TrEMBL
Match: A0A0A0LI05 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006050 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 3.3e-50
Identity = 96/106 (90.57%), Postives = 99/106 (93.40%), Query Frame = 0


Query: 1   MVPRQLRTIFTGAAVIFGGIFTLRFASFLTIQTLRHTAEAKRRKIALPCRACRGKGFYIC 60
           M+PRQLRTIFTGAAVI GGI TL  ASFLTIQTLR TAEAKRRKI LPC+ACRGKGFY+C
Sbjct: 1   MIPRQLRTIFTGAAVILGGICTLNLASFLTIQTLRVTAEAKRRKIGLPCKACRGKGFYMC 60

Query: 61  KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRVQHCLNCLGKGYEV 107
           KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRVQ CLNCLGKGYEV
Sbjct: 61  KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRVQRCLNCLGKGYEV 106

[Close]

BLAST of Carg17519 vs. ExPASy TrEMBL
Match: A0A5D3BFD4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00060 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.3e-42
Identity = 85/92 (92.39%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 1  MVPRQLRTIFTGAAVIFGGIFTLRFASFLTIQTLRHTAEAKRRKIALPCRACRGKGFYIC 60
          M+PRQLRTIFTGAAVI GGI TL  ASFLTIQTLR TAEAKRRKIALPC+ACRGKGFYIC
Sbjct: 1  MIPRQLRTIFTGAAVILGGICTLNLASFLTIQTLRLTAEAKRRKIALPCKACRGKGFYIC 60

Query: 61 KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNR 93
          KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNR
Sbjct: 61 KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNR 92

[Close]

BLAST of Carg17519 vs. ExPASy TrEMBL
Match: A0A6P4BUI7 (uncharacterized protein LOC107435933 OS=Ziziphus jujuba OX=326968 GN=LOC107435933 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 5.7e-42
Identity = 78/105 (74.29%), Postives = 90/105 (85.71%), Query Frame = 0


Query: 1   MVPRQLRTIFTGAAVIFGGIFTLRFASFLTIQTLRHTAEAKRRKIALPCRACRGKGFYIC 60
           M+P+QLRT+ TGAAVI GGIFTL   S  TI TLR   EAKRRK+ALPCR C+GKGFYIC
Sbjct: 1   MIPKQLRTMATGAAVILGGIFTLNLVSSATIATLRLATEAKRRKVALPCRVCKGKGFYIC 60

Query: 61  KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRVQHCLNCLGKGYE 106
           +LC+GNA IQWSPL DP+A+NPC+CPTC+GNRVQ CLNCLGKGY+
Sbjct: 61  RLCKGNATIQWSPLYDPVAINPCLCPTCDGNRVQRCLNCLGKGYD 105

[Close]

BLAST of Carg17519 vs. TAIR 10
Match: AT5G20220.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 41.2 bits (95), Expect = 6.1e-04
Identity = 21/55 (38.18%), Postives = 26/55 (47.27%), Query Frame = 0


Query: 47  LPCRACRGKGFYICKLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRVQHCLNCLG 102
           LPC  CRG+G+  C  C     I+ S L          CP C+G  +  CL CLG
Sbjct: 90  LPCPTCRGRGYTSCSNCG----IERSRLD---------CPQCKGKGIMTCLRCLG 131

[Close]

BLAST of Carg17519 vs. TAIR 10
Match: AT5G20220.2 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 41.2 bits (95), Expect = 6.1e-04
Identity = 21/55 (38.18%), Postives = 26/55 (47.27%), Query Frame = 0


Query: 47  LPCRACRGKGFYICKLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRVQHCLNCLG 102
           LPC  CRG+G+  C  C     I+ S L          CP C+G  +  CL CLG
Sbjct: 90  LPCPTCRGRGYTSCSNCG----IERSRLD---------CPQCKGKGIMTCLRCLG 131

The following BLAST results are available for this feature:

BLAST of Carg17519 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021261.1	2.9e-56	100.00	hypothetical protein SDJN02_17949 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6586407.1	1.1e-55	100.00	hypothetical protein SDJN03_19140, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_008457839.1	1.1e-50	92.45	PREDICTED: uncharacterized protein LOC103497424 [Cucumis melo]	[more]
XP_022142951.1	1.1e-50	91.51	uncharacterized protein LOC111012944 [Momordica charantia]	[more]
XP_038889623.1	1.8e-50	90.57	uncharacterized protein LOC120079492 [Benincasa hispida]	[more]

BLAST of Carg17519 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg17519 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CNQ8	5.1e-51	91.51	uncharacterized protein LOC111012944 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A1S3C6K9	5.1e-51	92.45	uncharacterized protein LOC103497424 OS=Cucumis melo OX=3656 GN=LOC103497424 PE=...	[more]
A0A0A0LI05	3.3e-50	90.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006050 PE=4 SV=1	[more]
A0A5D3BFD4	3.3e-42	92.39	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6P4BUI7	5.7e-42	74.29	uncharacterized protein LOC107435933 OS=Ziziphus jujuba OX=326968 GN=LOC10743593...	[more]

BLAST of Carg17519 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20220.1	6.1e-04	38.18	zinc knuckle (CCHC-type) family protein	[more]
AT5G20220.2	6.1e-04	38.18	zinc knuckle (CCHC-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR15852	PLASTID TRANSCRIPTIONALLY ACTIVE PROTEIN	coord: 12..104
None	No IPR available	PANTHER	PTHR15852:SF63	BNAA02G17140D PROTEIN	coord: 12..104
IPR036410	Heat shock protein DnaJ, cysteine-rich domain superfamily	SUPERFAMILY	57938	DnaJ/Hsp40 cysteine-rich domain	coord: 44..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17519-RA	Carg17519-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane