Carg17503 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg17503
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Chaperone protein DnaJ-like
Location	Carg_Chr12: 11321762 .. 11322380 (-)
RNA-Seq Expression	Carg17503
Synteny	Carg17503

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACCACAAACAAGACGATCACTCACCGCAGAAACAGAACGCAAAGCTCATCACAAAACTTTCTGAATTTCACTCCTCAACAACAAATCCCAAGAATTTCAAAACCCCATTTGAATGGCATATTCTATATGTTCTTCCACACCCATTTTCTCCTTTAATGCCTCAACCAAGCCCAACCCTGGTATGTTCTTCTCTAATCCTGCTTTTGTTTCTATTAATTCCCTTTCAAGCTGTGTTTATAGCCATTTCTTTTCCCATTTTGTAGGGGTTTTTGTTGGCAACTCAGTGCCCCAGAAGGCTTTTCGGATCAATGAAGCGTTTCAAAGAACAAACCCCAGGAAGCTTTTGTCAGTTGAGGTCAAGGTATGGTTTCTCTGGACATTTCTTGTTAAATTCTCTTCGTTCTTGTGCAATGAACTTGATTGGTTATGGCTGATTTATGTACAAATTGTAGCACTGGAAATCATGGGATTGTCTGTAGCTCTATACTGAATGTCCTAGATGAAGGATTTAATTAGGAACTTCTTAACGTAGGAATGGAAGAGCATGTTTGAACAACCATTAGCTAGGTAGATGAGAATTGATTGAGTTTGAAATAAGGTTTGCGAATCGAAACTG

mRNA sequence

AAAACCACAAACAAGACGATCACTCACCGCAGAAACAGAACGCAAAGCTCATCACAAAACTTTCTGAATTTCACTCCTCAACAACAAATCCCAAGAATTTCAAAACCCCATTTGAATGGCATATTCTATATGTTCTTCCACACCCATTTTCTCCTTTAATGCCTCAACCAAGCCCAACCCTGGGGTTTTTGTTGGCAACTCAGTGCCCCAGAAGGCTTTTCGGATCAATGAAGCGTTTCAAAGAACAAACCCCAGGAAGCTTTTGTCAGTTGAGGTCAAGGTATGGTTTCTCTGGACATTTCTTGTTAAATTCTCTTCGTTCTTGTGCAATGAACTTGATTGGTTATGGCTGATTTATGTACAAATTGTAGCACTGGAAATCATGGGATTGTCTGTAGCTCTATACTGAATGTCCTAGATGAAGGATTTAATTAGGAACTTCTTAACGTAGGAATGGAAGAGCATGTTTGAACAACCATTAGCTAGGTAGATGAGAATTGATTGAGTTTGAAATAAGGTTTGCGAATCGAAACTG

Coding sequence (CDS)

ATGGCATATTCTATATGTTCTTCCACACCCATTTTCTCCTTTAATGCCTCAACCAAGCCCAACCCTGGGGTTTTTGTTGGCAACTCAGTGCCCCAGAAGGCTTTTCGGATCAATGAAGCGTTTCAAAGAACAAACCCCAGGAAGCTTTTGTCAGTTGAGGTCAAGGTATGGTTTCTCTGGACATTTCTTGTTAAATTCTCTTCGTTCTTGTGCAATGAACTTGATTGGTTATGGCTGATTTATGTACAAATTGTAGCACTGGAAATCATGGGATTGTCTGTAGCTCTATACTGA

Protein sequence

MAYSICSSTPIFSFNASTKPNPGVFVGNSVPQKAFRINEAFQRTNPRKLLSVEVKVWFLWTFLVKFSSFLCNELDWLWLIYVQIVALEIMGLSVALY

Homology

[Close]

BLAST of Carg17503 vs. NCBI nr
Match: KAG7021245.1 (hypothetical protein SDJN02_17933 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 196.1 bits (497), Expect = 1.4e-46
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MAYSICSSTPIFSFNASTKPNPGVFVGNSVPQKAFRINEAFQRTNPRKLLSVEVKVWFLW 60
          MAYSICSSTPIFSFNASTKPNPGVFVGNSVPQKAFRINEAFQRTNPRKLLSVEVKVWFLW
Sbjct: 1  MAYSICSSTPIFSFNASTKPNPGVFVGNSVPQKAFRINEAFQRTNPRKLLSVEVKVWFLW 60

Query: 61 TFLVKFSSFLCNELDWLWLIYVQIVALEIMGLSVALY 98
          TFLVKFSSFLCNELDWLWLIYVQIVALEIMGLSVALY
Sbjct: 61 TFLVKFSSFLCNELDWLWLIYVQIVALEIMGLSVALY 97

[Close]

BLAST of Carg17503 vs. NCBI nr
Match: XP_022965999.1 (uncharacterized protein LOC111465718 [Cucurbita maxima])

HSP 1 Score: 113.6 bits (283), Expect = 9.5e-22
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MAYSICSSTPIFSFNASTKPNPGVFVGNSVPQKAFRINEAFQRTNPRKLLSVEVK 56
          MAYSICSSTPIFSFNASTKPNPGVFVGNSVPQKAFRINEAFQRTNPRKLLSVEVK
Sbjct: 1  MAYSICSSTPIFSFNASTKPNPGVFVGNSVPQKAFRINEAFQRTNPRKLLSVEVK 55

[Close]

BLAST of Carg17503 vs. NCBI nr
Match: XP_023537582.1 (uncharacterized protein LOC111798573 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.5 bits (275), Expect = 8.0e-21
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1  MAYSICSSTPIFSFNASTKPNPGVFVGNSVPQKAFRINEAFQRTNPRKLLSVEVK 56
          MAYSICSSTPI SFNASTKPNPGVFVGNSVPQKAFRINEAFQRTNPRKLLSVEVK
Sbjct: 1  MAYSICSSTPICSFNASTKPNPGVFVGNSVPQKAFRINEAFQRTNPRKLLSVEVK 55

[Close]

BLAST of Carg17503 vs. NCBI nr
Match: XP_022938233.1 (uncharacterized protein LOC111444376 [Cucurbita moschata])

HSP 1 Score: 110.5 bits (275), Expect = 8.0e-21
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1  MAYSICSSTPIFSFNASTKPNPGVFVGNSVPQKAFRINEAFQRTNPRKLLSVEVK 56
          MAYSICSSTPI SFNASTKPNPGVFVGNSVPQKAFRINEAFQRTNPRKLLSVEVK
Sbjct: 1  MAYSICSSTPICSFNASTKPNPGVFVGNSVPQKAFRINEAFQRTNPRKLLSVEVK 55

[Close]

BLAST of Carg17503 vs. NCBI nr
Match: KAG6586393.1 (Protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110.5 bits (275), Expect = 8.0e-21
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1  MAYSICSSTPIFSFNASTKPNPGVFVGNSVPQKAFRINEAFQRTNPRKLLSVEVK 56
          MAYSICSSTPI SFNASTKPNPGVFVGNSVPQKAFRINEAFQRTNPRKLLSVEVK
Sbjct: 1  MAYSICSSTPICSFNASTKPNPGVFVGNSVPQKAFRINEAFQRTNPRKLLSVEVK 55

[Close]

BLAST of Carg17503 vs. ExPASy TrEMBL
Match: A0A6J1HSG2 (uncharacterized protein LOC111465718 OS=Cucurbita maxima OX=3661 GN=LOC111465718 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 4.6e-22
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MAYSICSSTPIFSFNASTKPNPGVFVGNSVPQKAFRINEAFQRTNPRKLLSVEVK 56
          MAYSICSSTPIFSFNASTKPNPGVFVGNSVPQKAFRINEAFQRTNPRKLLSVEVK
Sbjct: 1  MAYSICSSTPIFSFNASTKPNPGVFVGNSVPQKAFRINEAFQRTNPRKLLSVEVK 55

[Close]

BLAST of Carg17503 vs. ExPASy TrEMBL
Match: A0A6J1FIB2 (uncharacterized protein LOC111444376 OS=Cucurbita moschata OX=3662 GN=LOC111444376 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.9e-21
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1  MAYSICSSTPIFSFNASTKPNPGVFVGNSVPQKAFRINEAFQRTNPRKLLSVEVK 56
          MAYSICSSTPI SFNASTKPNPGVFVGNSVPQKAFRINEAFQRTNPRKLLSVEVK
Sbjct: 1  MAYSICSSTPICSFNASTKPNPGVFVGNSVPQKAFRINEAFQRTNPRKLLSVEVK 55

[Close]

BLAST of Carg17503 vs. ExPASy TrEMBL
Match: A0A0A0LFZ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006240 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.1e-14
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 1  MAYSICSSTPIFSFNASTKPNPGVFVGNSVPQKAFRINEAFQRTNPRKLLSVEVK 56
          MA+SICSSTPI SFN S+ P PGV VGNSVPQKAFRINEAFQ+TN  +LLS EVK
Sbjct: 1  MAFSICSSTPICSFNHSSNPKPGVLVGNSVPQKAFRINEAFQKTNSIRLLSFEVK 55

[Close]

BLAST of Carg17503 vs. ExPASy TrEMBL
Match: A0A6J1CMI1 (uncharacterized protein LOC111012989 OS=Momordica charantia OX=3673 GN=LOC111012989 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.7e-13
Identity = 42/55 (76.36%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 1  MAYSICSSTPIFSFNASTKPNPGVFVGNSVPQKAFRINEAFQRTNPRKLLSVEVK 56
          MAYSICSSTPI SFNAS KP PGVFV N V +KAF+ NEAFQRTNP ++LS EVK
Sbjct: 1  MAYSICSSTPICSFNASGKPKPGVFVRNLVSRKAFQTNEAFQRTNPIRILSFEVK 55

[Close]

BLAST of Carg17503 vs. ExPASy TrEMBL
Match: A0A5A7V544 (Chaperone protein DnaJ-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00260 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.0e-13
Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 1  MAYSICSSTPIFSFNASTKPNPGVFVGNSVPQKAFRINEAFQRTNPRKLLSVEVK 56
          MA+SICSSTPI SFN S+ P PGV VGNSVPQKAFR+NEA QRTNP + LS E K
Sbjct: 1  MAFSICSSTPICSFNHSSNPKPGVLVGNSVPQKAFRMNEAVQRTNPIRHLSFEAK 55

The following BLAST results are available for this feature:

BLAST of Carg17503 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021245.1	1.4e-46	100.00	hypothetical protein SDJN02_17933 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022965999.1	9.5e-22	100.00	uncharacterized protein LOC111465718 [Cucurbita maxima]	[more]
XP_023537582.1	8.0e-21	98.18	uncharacterized protein LOC111798573 [Cucurbita pepo subsp. pepo]	[more]
XP_022938233.1	8.0e-21	98.18	uncharacterized protein LOC111444376 [Cucurbita moschata]	[more]
KAG6586393.1	8.0e-21	98.18	Protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic, partial [Cucurbita argyrosperm...	[more]

BLAST of Carg17503 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg17503 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HSG2	4.6e-22	100.00	uncharacterized protein LOC111465718 OS=Cucurbita maxima OX=3661 GN=LOC111465718...	[more]
A0A6J1FIB2	3.9e-21	98.18	uncharacterized protein LOC111444376 OS=Cucurbita moschata OX=3662 GN=LOC1114443...	[more]
A0A0A0LFZ2	2.1e-14	78.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006240 PE=4 SV=1	[more]
A0A6J1CMI1	1.7e-13	76.36	uncharacterized protein LOC111012989 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A5A7V544	3.0e-13	74.55	Chaperone protein DnaJ-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of Carg17503 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17503-RA	Carg17503-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0061077	chaperone-mediated protein folding
cellular_component	GO:0101031	chaperone complex
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0044183	protein folding chaperone