Carg17456 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACGATTCGAACGAGCATAAAGAAAATGCCTCACCGTCGTCTCTGAAGGCGAAAATCAAATCTTCTCTGTGTTTGTCCTGCTGCCTTCGTAGGCACCGGAACGGCCACCACCACCTTCAACGCCACCAACACCAACGGCGGATGTCGTTTTCCTCTGATGGAGAAGTGCCTAGTCCGCTCACGAGGTGTTCCTCTGCCAAGGATAAATCCAGATCTCGCGAGAGTCCTGAGTCTAAGACCGATTGGCGTCCGCATTTCATTTCGCGACTTGGCCGCCATTCTCGCCGTCATTCTTCTGCTTCCGTGGATTTTCACTACGATGCGCTTAGTTATGCGCTTAATTTTGATGAAGGATACGATGAAGGACATGTTGATGATGCGTTTCCGCTCAGAAATTTCTCCTCTAGGTTACCGGCTTCTCCGCCGAAATCAGCGCCGTCTTCCACGGAGACGTCGAGGGAGATGACCACGGCGTATAGCTAA ATGGACGATTCGAACGAGCATAAAGAAAATGCCTCACCGTCGTCTCTGAAGGCGAAAATCAAATCTTCTCTGTGTTTGTCCTGCTGCCTTCGTAGGCACCGGAACGGCCACCACCACCTTCAACGCCACCAACACCAACGGCGGATGTCGTTTTCCTCTGATGGAGAAGTGCCTAGTCCGCTCACGAGGTGTTCCTCTGCCAAGGATAAATCCAGATCTCGCGAGAGTCCTGAGTCTAAGACCGATTGGCGTCCGCATTTCATTTCGCGACTTGGCCGCCATTCTCGCCGTCATTCTTCTGCTTCCGTGGATTTTCACTACGATGCGCTTAGTTATGCGCTTAATTTTGATGAAGGATACGATGAAGGACATGTTGATGATGCGTTTCCGCTCAGAAATTTCTCCTCTAGGTTACCGGCTTCTCCGCCGAAATCAGCGCCGTCTTCCACGGAGACGTCGAGGGAGATGACCACGGCGTATAGCTAA ATGGACGATTCGAACGAGCATAAAGAAAATGCCTCACCGTCGTCTCTGAAGGCGAAAATCAAATCTTCTCTGTGTTTGTCCTGCTGCCTTCGTAGGCACCGGAACGGCCACCACCACCTTCAACGCCACCAACACCAACGGCGGATGTCGTTTTCCTCTGATGGAGAAGTGCCTAGTCCGCTCACGAGGTGTTCCTCTGCCAAGGATAAATCCAGATCTCGCGAGAGTCCTGAGTCTAAGACCGATTGGCGTCCGCATTTCATTTCGCGACTTGGCCGCCATTCTCGCCGTCATTCTTCTGCTTCCGTGGATTTTCACTACGATGCGCTTAGTTATGCGCTTAATTTTGATGAAGGATACGATGAAGGACATGTTGATGATGCGTTTCCGCTCAGAAATTTCTCCTCTAGGTTACCGGCTTCTCCGCCGAAATCAGCGCCGTCTTCCACGGAGACGTCGAGGGAGATGACCACGGCGTATAGCTAA MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGEVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSSASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS Homology
BLAST of Carg17456 vs. NCBI nr
Match: KAG6586352.1 (hypothetical protein SDJN03_19085, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021198.1 hypothetical protein SDJN02_17886, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 320.9 bits (821), Expect = 6.5e-84 Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0
BLAST of Carg17456 vs. NCBI nr
Match: XP_022938304.1 (uncharacterized protein LOC111444439 [Cucurbita moschata]) HSP 1 Score: 319.7 bits (818), Expect = 1.4e-83 Identity = 160/161 (99.38%), Postives = 161/161 (100.00%), Query Frame = 0
BLAST of Carg17456 vs. NCBI nr
Match: XP_023536962.1 (uncharacterized protein LOC111798189 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 316.2 bits (809), Expect = 1.6e-82 Identity = 158/161 (98.14%), Postives = 160/161 (99.38%), Query Frame = 0
BLAST of Carg17456 vs. NCBI nr
Match: XP_022965990.1 (uncharacterized protein LOC111465710 [Cucurbita maxima]) HSP 1 Score: 312.4 bits (799), Expect = 2.3e-81 Identity = 156/161 (96.89%), Postives = 159/161 (98.76%), Query Frame = 0
BLAST of Carg17456 vs. NCBI nr
Match: XP_038890730.1 (homeobox protein MOX-2 [Benincasa hispida]) HSP 1 Score: 243.8 bits (621), Expect = 1.0e-60 Identity = 130/162 (80.25%), Postives = 137/162 (84.57%), Query Frame = 0
BLAST of Carg17456 vs. ExPASy TrEMBL
Match: A0A6J1FDP2 (uncharacterized protein LOC111444439 OS=Cucurbita moschata OX=3662 GN=LOC111444439 PE=4 SV=1) HSP 1 Score: 319.7 bits (818), Expect = 7.0e-84 Identity = 160/161 (99.38%), Postives = 161/161 (100.00%), Query Frame = 0
BLAST of Carg17456 vs. ExPASy TrEMBL
Match: A0A6J1HQB7 (uncharacterized protein LOC111465710 OS=Cucurbita maxima OX=3661 GN=LOC111465710 PE=4 SV=1) HSP 1 Score: 312.4 bits (799), Expect = 1.1e-81 Identity = 156/161 (96.89%), Postives = 159/161 (98.76%), Query Frame = 0
BLAST of Carg17456 vs. ExPASy TrEMBL
Match: A0A5D3BFQ4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00930 PE=4 SV=1) HSP 1 Score: 234.2 bits (596), Expect = 3.9e-58 Identity = 126/167 (75.45%), Postives = 136/167 (81.44%), Query Frame = 0
BLAST of Carg17456 vs. ExPASy TrEMBL
Match: A0A0A0LL60 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009350 PE=4 SV=1) HSP 1 Score: 233.0 bits (593), Expect = 8.6e-58 Identity = 127/165 (76.97%), Postives = 136/165 (82.42%), Query Frame = 0
BLAST of Carg17456 vs. ExPASy TrEMBL
Match: A0A1S3CDF1 (uncharacterized protein LOC103499607 OS=Cucumis melo OX=3656 GN=LOC103499607 PE=4 SV=1) HSP 1 Score: 233.0 bits (593), Expect = 8.6e-58 Identity = 125/167 (74.85%), Postives = 136/167 (81.44%), Query Frame = 0
BLAST of Carg17456 vs. TAIR 10
Match: AT5G35090.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 68.2 bits (165), Expect = 7.0e-12 Identity = 54/151 (35.76%), Postives = 77/151 (50.99%), Query Frame = 0
BLAST of Carg17456 vs. TAIR 10
Match: AT3G01430.1 (BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1); Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 49.7 bits (117), Expect = 2.6e-06 Identity = 28/55 (50.91%), Postives = 33/55 (60.00%), Query Frame = 0
BLAST of Carg17456 vs. TAIR 10
Match: AT5G14890.1 (NHL domain-containing protein ) HSP 1 Score: 47.4 bits (111), Expect = 1.3e-05 Identity = 25/51 (49.02%), Postives = 32/51 (62.75%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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