Carg17349 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg17349
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	60S ribosome subunit biogenesis protein NIP7 homolog
Location	Carg_Chr06: 9218723 .. 9219286 (+)
RNA-Seq Expression	Carg17349
Synteny	Carg17349

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCCCCTAGACGAGAAAGAGACCACTGCCGTGTTCGAAAAGCTCCACAAATTCACCGGAAACAACCTCAAGAACATCGTCGAGAATCCCGCTCACGAAGGCCCCGAACAAAATCCCGGCCGCTACTGCTTCCGCCTCCACAAAAACAAGGTCTATTACGTCAGCGATTCTCTCGTCAAGCGAGCCACCAACGTAGCCCGTAACAATCTCGTGGCTCTCGGCACATGCATTGGCAAGTTCACTCATGGCGGCAGTTTTCATCTCACCGTTCACGCGCTAGGTCTCTTGTCTGCCAATGCCAGACACAAGGTTTGGCTTAAACCTACCTCTGAGATGTCTTTTTTGTATGGGAACCATGTTTTGAAAGGAGGCTTAGGGCGGATTACTGAAAATATTGCTCCTGGCGATGGAGTCGTTGTGTATTCTATGTCGGACGTGCCTTTGGGATTCGGAATTGCGGCGAAGTCCACTCAGGATTGTAGGAAGTTGGACCCTAATGGGATTGTGGTTCTTCATCAGTCGGATATTGGAGAGTATTTGAGGATGGAGGATGAGCTTTGA

mRNA sequence

ATGAGGCCCCTAGACGAGAAAGAGACCACTGCCGTGTTCGAAAAGCTCCACAAATTCACCGGAAACAACCTCAAGAACATCGTCGAGAATCCCGCTCACGAAGGCCCCGAACAAAATCCCGGCCGCTACTGCTTCCGCCTCCACAAAAACAAGGTCTATTACGTCAGCGATTCTCTCGTCAAGCGAGCCACCAACGTAGCCCGTAACAATCTCGTGGCTCTCGGCACATGCATTGGCAAGTTCACTCATGGCGGCAGTTTTCATCTCACCGTTCACGCGCTAGGTCTCTTGTCTGCCAATGCCAGACACAAGGTTTGGCTTAAACCTACCTCTGAGATGTCTTTTTTGTATGGGAACCATGTTTTGAAAGGAGGCTTAGGGCGGATTACTGAAAATATTGCTCCTGGCGATGGAGTCGTTGTGTATTCTATGTCGGACGTGCCTTTGGGATTCGGAATTGCGGCGAAGTCCACTCAGGATTGTAGGAAGTTGGACCCTAATGGGATTGTGGTTCTTCATCAGTCGGATATTGGAGAGTATTTGAGGATGGAGGATGAGCTTTGA

Coding sequence (CDS)

ATGAGGCCCCTAGACGAGAAAGAGACCACTGCCGTGTTCGAAAAGCTCCACAAATTCACCGGAAACAACCTCAAGAACATCGTCGAGAATCCCGCTCACGAAGGCCCCGAACAAAATCCCGGCCGCTACTGCTTCCGCCTCCACAAAAACAAGGTCTATTACGTCAGCGATTCTCTCGTCAAGCGAGCCACCAACGTAGCCCGTAACAATCTCGTGGCTCTCGGCACATGCATTGGCAAGTTCACTCATGGCGGCAGTTTTCATCTCACCGTTCACGCGCTAGGTCTCTTGTCTGCCAATGCCAGACACAAGGTTTGGCTTAAACCTACCTCTGAGATGTCTTTTTTGTATGGGAACCATGTTTTGAAAGGAGGCTTAGGGCGGATTACTGAAAATATTGCTCCTGGCGATGGAGTCGTTGTGTATTCTATGTCGGACGTGCCTTTGGGATTCGGAATTGCGGCGAAGTCCACTCAGGATTGTAGGAAGTTGGACCCTAATGGGATTGTGGTTCTTCATCAGTCGGATATTGGAGAGTATTTGAGGATGGAGGATGAGCTTTGA

Protein sequence

MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLVKRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNHVLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEYLRMEDEL

Homology

[Close]

BLAST of Carg17349 vs. NCBI nr
Match: XP_022948024.1 (60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata] >XP_023539905.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >KAG6597515.1 60S ribosome subunit biogenesis protein NIP7-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028973.1 60S ribosome subunit biogenesis protein NIP7-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 387.9 bits (995), Expect = 5.0e-104
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Carg17349 vs. NCBI nr
Match: XP_022973782.1 (60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima])

HSP 1 Score: 386.3 bits (991), Expect = 1.5e-103
Identity = 185/187 (98.93%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           KRATNVARNNLVALGTCIGKFTHGGSFHLTVH+LGLLSANARHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHSLGLLSANARHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIAPGDGVVVYSMSD+PLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDIPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Carg17349 vs. NCBI nr
Match: KAG6582220.1 (60S ribosome subunit biogenesis protein NIP7-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 378.6 bits (971), Expect = 3.0e-101
Identity = 181/187 (96.79%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETTAVFEKLHKFTGNNLKNIVENP+HEGPE NPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           KRATNVAR+NLVALGTCIGKFTHGGSFHLTVH+LGLLS+NA+HKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Carg17349 vs. NCBI nr
Match: XP_022979935.1 (60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima] >XP_022979936.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima] >XP_022979937.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima] >XP_022979939.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima] >XP_022979940.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima] >XP_022979941.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima])

HSP 1 Score: 377.1 bits (967), Expect = 8.8e-101
Identity = 180/187 (96.26%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETTAVFEKLHKFTGNNLKNIVENP+HEGPE NPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           KRATNVAR+NLV LGTCIGKFTHGGSFHLTVH+LGLLS+NA+HKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVVLGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Carg17349 vs. NCBI nr
Match: KAG7018619.1 (60S ribosome subunit biogenesis protein NIP7-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 377.1 bits (967), Expect = 8.8e-101
Identity = 180/187 (96.26%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETTAVFEKLHKFTGNNLKNIVENP+HEGPE NPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           KRATNVAR+NLVALGTCIGKFTHGGSFHLTVH+LGLLS+NA+HKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIA KSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIATKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Carg17349 vs. ExPASy Swiss-Prot
Match: A4QND5 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus tropicalis OX=8364 GN=nip7 PE=2 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.9e-61
Identity = 114/187 (60.96%), Postives = 142/187 (75.94%), Query Frame = 0


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL ++ET A+FEKL K+ G N+K +V+ P         G YCFRLH ++VYYVS+ ++
Sbjct: 1   MRPLTDEETKAMFEKLSKYIGENIKLLVDRP--------DGTYCFRLHNDRVYYVSERIL 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           K ATN+AR+ LV+LGTC GKFT    F L V AL  L+  A++KVW+KP +E SFLYGNH
Sbjct: 61  KLATNIARDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN +   GVVVYSM+D+PLGFG+AAKSTQ+CRKLDP  IVV HQ+D+GEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQECRKLDPMAIVVFHQADVGEY 179

Query: 181 LRMEDEL 188
           +R ED L
Sbjct: 181 IRHEDTL 179

[Close]

BLAST of Carg17349 vs. ExPASy Swiss-Prot
Match: Q6DFH9 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus laevis OX=8355 GN=nip7 PE=2 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 3.2e-61
Identity = 114/187 (60.96%), Postives = 141/187 (75.40%), Query Frame = 0


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL ++ET A+FEKL K+ G N+K +V+ P         G YCFRLH ++VYYVS+ ++
Sbjct: 1   MRPLTDEETRAMFEKLSKYIGENIKLLVDRP--------DGTYCFRLHNDRVYYVSEKIL 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           K ATN+AR+ LV+ GTC GKFT    F L V AL  L+  A++KVW+KP +E SFLYGNH
Sbjct: 61  KLATNIARDKLVSFGTCFGKFTKTQKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN +   GVVVYSM+DVPLGFG+AAKSTQ+CRKLDP  IVV HQ+D+GEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADVPLGFGVAAKSTQECRKLDPMAIVVFHQADVGEY 179

Query: 181 LRMEDEL 188
           +R ED L
Sbjct: 181 IRHEDTL 179

[Close]

BLAST of Carg17349 vs. ExPASy Swiss-Prot
Match: Q4T2X8 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Tetraodon nigroviridis OX=99883 GN=nip7 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 7.9e-60
Identity = 110/187 (58.82%), Postives = 139/187 (74.33%), Query Frame = 0


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL E+ET  +FEKL K+ G N+K +V+ P         G YCFRLH ++VYY+S+ ++
Sbjct: 1   MRPLTEEETKTMFEKLSKYIGENIKLLVDRP--------DGTYCFRLHNDRVYYMSERIL 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           K ATN+AR  LV++GTC GKFT    F L + AL  L+  A+ KVW+KP +E SFLYGNH
Sbjct: 61  KLATNIARQKLVSVGTCFGKFTKTSKFRLHITALDFLAPYAKFKVWVKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN A   GVVVYSM+DVPLGFG+AAKSTQ+CR++DP  IVV HQ+D+GE+
Sbjct: 121 VLKSGLGRITENTAQYQGVVVYSMADVPLGFGVAAKSTQECRRVDPMSIVVFHQADVGEF 179

Query: 181 LRMEDEL 188
           +R ED L
Sbjct: 181 IRNEDSL 179

[Close]

BLAST of Carg17349 vs. ExPASy Swiss-Prot
Match: Q9WV50 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Rattus norvegicus OX=10116 GN=Nip7 PE=2 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 3.9e-59
Identity = 111/187 (59.36%), Postives = 139/187 (74.33%), Query Frame = 0


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL E+ET  +FEK+ K+ G NL+ +V+ P         G YCFRLH ++VYYVS+ ++
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRP--------DGTYCFRLHNDRVYYVSEMIL 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           K A N++ + LV+LGTC GKFT    F L V AL  L+  A++KVW+KP +E SFLYGNH
Sbjct: 61  KLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDFLAPYAKYKVWIKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN +   GVVVYSM+DVPLGFG+AAKSTQDCRK+DP  IVV HQ+DIGEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADVPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEY 179

Query: 181 LRMEDEL 188
           +R E+ L
Sbjct: 181 IRHEETL 179

[Close]

BLAST of Carg17349 vs. ExPASy Swiss-Prot
Match: Q9Y221 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Homo sapiens OX=9606 GN=NIP7 PE=1 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 6.7e-59
Identity = 110/187 (58.82%), Postives = 139/187 (74.33%), Query Frame = 0


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL E+ET  +FEK+ K+ G NL+ +V+ P         G YCFRLH ++VYYVS+ ++
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRP--------DGTYCFRLHNDRVYYVSEKIM 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           K A N++ + LV+LGTC GKFT    F L V AL  L+  A++KVW+KP +E SFLYGNH
Sbjct: 61  KLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWIKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN +   GVVVYSM+D+PLGFG+AAKSTQDCRK+DP  IVV HQ+DIGEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEY 179

Query: 181 LRMEDEL 188
           +R E+ L
Sbjct: 181 VRHEETL 179

[Close]

BLAST of Carg17349 vs. ExPASy TrEMBL
Match: A0A6J1G8L8 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucurbita moschata OX=3662 GN=LOC111451723 PE=3 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 2.4e-104
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Carg17349 vs. ExPASy TrEMBL
Match: A0A6J1I8G6 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucurbita maxima OX=3661 GN=LOC111472343 PE=3 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 7.1e-104
Identity = 185/187 (98.93%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           KRATNVARNNLVALGTCIGKFTHGGSFHLTVH+LGLLSANARHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHSLGLLSANARHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIAPGDGVVVYSMSD+PLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDIPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Carg17349 vs. ExPASy TrEMBL
Match: A0A6J1IQ28 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucurbita maxima OX=3661 GN=LOC111479477 PE=3 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 4.3e-101
Identity = 180/187 (96.26%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETTAVFEKLHKFTGNNLKNIVENP+HEGPE NPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           KRATNVAR+NLV LGTCIGKFTHGGSFHLTVH+LGLLS+NA+HKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVVLGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Carg17349 vs. ExPASy TrEMBL
Match: A0A6J1GYK7 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucurbita moschata OX=3662 GN=LOC111458029 PE=3 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 9.5e-101
Identity = 179/187 (95.72%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETTAVFEKLHKFTGNNLKNIVENP+HEGPE NPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           KRATNVAR+NLVALGTCIGKFTHGGSFHLTVH+LGLL++NA+HKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLASNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIA KSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIATKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Carg17349 vs. ExPASy TrEMBL
Match: A0A6J1C974 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Momordica charantia OX=3673 GN=LOC111009133 PE=3 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 5.2e-99
Identity = 177/187 (94.65%), Postives = 182/187 (97.33%), Query Frame = 0


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETTAVFEKLHKFTGNNL+NIVENP+HEGPE NPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLRNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           KRATNVAR NLVALGTCIGK THGGSFHLTV +LGLL+ NA+HKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARRNLVALGTCIGKITHGGSFHLTVQSLGLLAPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Carg17349 vs. TAIR 10
Match: AT4G15770.1 (RNA binding )

HSP 1 Score: 325.9 bits (834), Expect = 2.2e-89
Identity = 152/187 (81.28%), Postives = 170/187 (90.91%), Query Frame = 0


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE ETT VFEKL KF GNNLK IVENP+ EGPE  PG YCFRL KN+VYYVS++LV
Sbjct: 1   MRPLDETETTVVFEKLFKFVGNNLKKIVENPSDEGPESTPGSYCFRLQKNRVYYVSEALV 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           KRATN++R NLV+ GTCIGK+TH GSFHLT+ +L +L+ANA+HKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNISRKNLVSFGTCIGKYTHAGSFHLTIMSLNILAANAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRIT++I PGDGVVV+SMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQ+DIGEY
Sbjct: 121 VLKGGLGRITDSIVPGDGVVVFSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQADIGEY 180

Query: 181 LRMEDEL 188
           LR ED+L
Sbjct: 181 LRGEDDL 187

The following BLAST results are available for this feature:

BLAST of Carg17349 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948024.1	5.0e-104	100.00	60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata] >XP_02...	[more]
XP_022973782.1	1.5e-103	98.93	60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima]	[more]
KAG6582220.1	3.0e-101	96.79	60S ribosome subunit biogenesis protein NIP7-like protein, partial [Cucurbita ar...	[more]
XP_022979935.1	8.8e-101	96.26	60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima] >XP_0229...	[more]
KAG7018619.1	8.8e-101	96.26	60S ribosome subunit biogenesis protein NIP7-like protein, partial [Cucurbita ar...	[more]

BLAST of Carg17349 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4QND5	1.9e-61	60.96	60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus tropicalis OX=83...	[more]
Q6DFH9	3.2e-61	60.96	60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus laevis OX=8355 G...	[more]
Q4T2X8	7.9e-60	58.82	60S ribosome subunit biogenesis protein NIP7 homolog OS=Tetraodon nigroviridis O...	[more]
Q9WV50	3.9e-59	59.36	60S ribosome subunit biogenesis protein NIP7 homolog OS=Rattus norvegicus OX=101...	[more]
Q9Y221	6.7e-59	58.82	60S ribosome subunit biogenesis protein NIP7 homolog OS=Homo sapiens OX=9606 GN=...	[more]

BLAST of Carg17349 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G8L8	2.4e-104	100.00	60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucurbita moschata OX=36...	[more]
A0A6J1I8G6	7.1e-104	98.93	60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucurbita maxima OX=3661...	[more]
A0A6J1IQ28	4.3e-101	96.26	60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucurbita maxima OX=3661...	[more]
A0A6J1GYK7	9.5e-101	95.72	60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucurbita moschata OX=36...	[more]
A0A6J1C974	5.2e-99	94.65	60S ribosome subunit biogenesis protein NIP7 homolog OS=Momordica charantia OX=3...	[more]

BLAST of Carg17349 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15770.1	2.2e-89	81.28	RNA binding	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002478	PUA domain	SMART	SM00359	pua_5	coord: 103..178 e-value: 3.1E-17 score: 73.3
None	No IPR available	GENE3D	3.10.450.220		coord: 1..101 e-value: 4.2E-37 score: 128.1
None	No IPR available	PANTHER	PTHR23415:SF4	60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 HOMOLOG	coord: 1..187
None	No IPR available	PANTHER	PTHR23415	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7	coord: 1..187
None	No IPR available	PROSITE	PS50890	PUA	coord: 102..178 score: 14.4872
None	No IPR available	SUPERFAMILY	88802	Pre-PUA domain	coord: 1..101
IPR016686	Ribosome biogenesis factor, NIP7	PIRSF	PIRSF017190	NIP7	coord: 1..187 e-value: 2.7E-79 score: 262.7
IPR005155	UPF0113, PUA domain	PFAM	PF03657	UPF0113	coord: 104..182 e-value: 1.9E-21 score: 76.1
IPR040598	UPF0113, pre-PUA domain	PFAM	PF17833	UPF0113_N	coord: 2..90 e-value: 3.2E-24 score: 85.2
IPR036974	PUA domain superfamily	GENE3D	2.30.130.10	PUA domain	coord: 102..187 e-value: 2.2E-41 score: 141.6
IPR015947	PUA-like superfamily	SUPERFAMILY	88697	PUA domain-like	coord: 103..178

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17349-RA	Carg17349-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042273	ribosomal large subunit biogenesis
biological_process	GO:0042255	ribosome assembly
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0030687	preribosome, large subunit precursor
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding