Carg17336 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAATGGGTTTGAAATCAGTATTGTTTGTCTTCGTGATGGTTGCTGCCATGGGAGCTCCATTAATGGTGGTGGAAGCTCAGCTTGGGTCCATTGGCAGTCTTCTTAGCCTTACCAGAATCCAAGGAACTGTCTTTTGCACTGCCAATGGCAACATCGGCACCAATGGCACCGCCACTCCTGCCTTCCCGAGTAAGTTATTTTCAAATTAGTTGAGCTATGTTCAAATTGATAAACTATTTATATGCGTATATATTTTTCATGCAGATGCAGCCGTGCAACTGCAATGCGGAAACGGAAACGTCGTGTCGACTGCAACAACAAACAGCGCGGGAGTGTTTTCGATTCTGTTAGATCCTTTACAGCTCCTTCTCTCTTCAGTCACCTCCAACTGTAGCGTCGTAGTGAACACGCCACTGTCGAGCTGCAACGCAACGTTACCCTCTGTCGGGAATTTGGTTTCGGCGTTGAATTTGGTCGGAATGACATTTCAGGGACTCCTCCGTATAACCAACATCATCCCCACGGGATTCATATTCCAACCATCTACATAAAACTGCTTATGACTTGTGTTTGATGTGTTTGCTGTTGTCAAAAATAAACGTTGTCCGTGTCCGTGTCCGTGTCTGTGTCTGTGTCTGTGTCTGTGTTCGTGTTCGGGTTCGGGTAGC AAAATGGGTTTGAAATCAGTATTGTTTGTCTTCGTGATGGTTGCTGCCATGGGAGCTCCATTAATGGTGGTGGAAGCTCAGCTTGGGTCCATTGGCAGTCTTCTTAGCCTTACCAGAATCCAAGGAACTGTCTTTTGCACTGCCAATGGCAACATCGGCACCAATGGCACCGCCACTCCTGCCTTCCCGAATGCAGCCGTGCAACTGCAATGCGGAAACGGAAACGTCGTGTCGACTGCAACAACAAACAGCGCGGGAGTGTTTTCGATTCTGTTAGATCCTTTACAGCTCCTTCTCTCTTCAGTCACCTCCAACTGTAGCGTCGTAGTGAACACGCCACTGTCGAGCTGCAACGCAACGTTACCCTCTGTCGGGAATTTGGTTTCGGCGTTGAATTTGGTCGGAATGACATTTCAGGGACTCCTCCGTATAACCAACATCATCCCCACGGGATTCATATTCCAACCATCTACATAAAACTGCTTATGACTTGTGTTTGATGTGTTTGCTGTTGTCAAAAATAAACGTTGTCCGTGTCCGTGTCCGTGTCTGTGTCTGTGTCTGTGTCTGTGTTCGTGTTCGGGTTCGGGTAGC ATGGGTTTGAAATCAGTATTGTTTGTCTTCGTGATGGTTGCTGCCATGGGAGCTCCATTAATGGTGGTGGAAGCTCAGCTTGGGTCCATTGGCAGTCTTCTTAGCCTTACCAGAATCCAAGGAACTGTCTTTTGCACTGCCAATGGCAACATCGGCACCAATGGCACCGCCACTCCTGCCTTCCCGAATGCAGCCGTGCAACTGCAATGCGGAAACGGAAACGTCGTGTCGACTGCAACAACAAACAGCGCGGGAGTGTTTTCGATTCTGTTAGATCCTTTACAGCTCCTTCTCTCTTCAGTCACCTCCAACTGTAGCGTCGTAGTGAACACGCCACTGTCGAGCTGCAACGCAACGTTACCCTCTGTCGGGAATTTGGTTTCGGCGTTGAATTTGGTCGGAATGACATTTCAGGGACTCCTCCGTATAACCAACATCATCCCCACGGGATTCATATTCCAACCATCTACATAA MGLKSVLFVFVMVAAMGAPLMVVEAQLGSIGSLLSLTRIQGTVFCTANGNIGTNGTATPAFPNAAVQLQCGNGNVVSTATTNSAGVFSILLDPLQLLLSSVTSNCSVVVNTPLSSCNATLPSVGNLVSALNLVGMTFQGLLRITNIIPTGFIFQPST Homology
BLAST of Carg17336 vs. NCBI nr
Match: KAG6597529.1 (hypothetical protein SDJN03_10709, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028986.1 hypothetical protein SDJN02_10169 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 291.2 bits (744), Expect = 5.4e-75 Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0
BLAST of Carg17336 vs. NCBI nr
Match: XP_022937971.1 (phylloplanin-like [Cucurbita moschata]) HSP 1 Score: 288.1 bits (736), Expect = 4.5e-74 Identity = 155/157 (98.73%), Postives = 156/157 (99.36%), Query Frame = 0
BLAST of Carg17336 vs. NCBI nr
Match: XP_023522114.1 (phylloplanin-like [Cucurbita pepo subsp. pepo] >XP_023540360.1 phylloplanin-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 285.8 bits (730), Expect = 2.2e-73 Identity = 154/157 (98.09%), Postives = 156/157 (99.36%), Query Frame = 0
BLAST of Carg17336 vs. NCBI nr
Match: XP_022973793.1 (phylloplanin-like [Cucurbita maxima]) HSP 1 Score: 252.7 bits (644), Expect = 2.1e-63 Identity = 136/157 (86.62%), Postives = 141/157 (89.81%), Query Frame = 0
BLAST of Carg17336 vs. NCBI nr
Match: XP_038903470.1 (phylloplanin-like [Benincasa hispida]) HSP 1 Score: 216.9 bits (551), Expect = 1.3e-52 Identity = 116/156 (74.36%), Postives = 129/156 (82.69%), Query Frame = 0
BLAST of Carg17336 vs. ExPASy Swiss-Prot
Match: Q56S59 (Phylloplanin OS=Nicotiana tabacum OX=4097 PE=1 SV=1) HSP 1 Score: 101.3 bits (251), Expect = 1.0e-20 Identity = 66/156 (42.31%), Postives = 91/156 (58.33%), Query Frame = 0
BLAST of Carg17336 vs. ExPASy TrEMBL
Match: A0A6J1FBV3 (phylloplanin-like OS=Cucurbita moschata OX=3662 GN=LOC111444198 PE=4 SV=1) HSP 1 Score: 288.1 bits (736), Expect = 2.2e-74 Identity = 155/157 (98.73%), Postives = 156/157 (99.36%), Query Frame = 0
BLAST of Carg17336 vs. ExPASy TrEMBL
Match: A0A6J1IE70 (phylloplanin-like OS=Cucurbita maxima OX=3661 GN=LOC111472350 PE=4 SV=1) HSP 1 Score: 252.7 bits (644), Expect = 1.0e-63 Identity = 136/157 (86.62%), Postives = 141/157 (89.81%), Query Frame = 0
BLAST of Carg17336 vs. ExPASy TrEMBL
Match: A0A6J1C7T1 (phylloplanin-like OS=Momordica charantia OX=3673 GN=LOC111009161 PE=4 SV=1) HSP 1 Score: 205.3 bits (521), Expect = 1.9e-49 Identity = 109/151 (72.19%), Postives = 127/151 (84.11%), Query Frame = 0
BLAST of Carg17336 vs. ExPASy TrEMBL
Match: A0A5B7BLH4 (Putative Pollen Ole e 1 allergen and extensin family protein OS=Davidia involucrata OX=16924 GN=Din_039271 PE=4 SV=1) HSP 1 Score: 197.6 bits (501), Expect = 3.9e-47 Identity = 106/155 (68.39%), Postives = 123/155 (79.35%), Query Frame = 0
BLAST of Carg17336 vs. ExPASy TrEMBL
Match: A0A5J5C4T7 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_000611 PE=4 SV=1) HSP 1 Score: 197.6 bits (501), Expect = 3.9e-47 Identity = 104/155 (67.10%), Postives = 123/155 (79.35%), Query Frame = 0
BLAST of Carg17336 vs. TAIR 10
Match: AT3G16660.1 (Pollen Ole e 1 allergen and extensin family protein ) HSP 1 Score: 136.0 bits (341), Expect = 2.7e-32 Identity = 74/125 (59.20%), Postives = 94/125 (75.20%), Query Frame = 0
BLAST of Carg17336 vs. TAIR 10
Match: AT3G16670.1 (Pollen Ole e 1 allergen and extensin family protein ) HSP 1 Score: 108.2 bits (269), Expect = 6.0e-24 Identity = 70/151 (46.36%), Postives = 95/151 (62.91%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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