Carg17325 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg17325
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr18: 10487393 .. 10488752 (-)
RNA-Seq ExpressionCarg17325
SyntenyCarg17325
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACCAGGTGTCCCACAATTCGAGGTGACCTGCCACGTCACTAACGAATCTCTTATCTCCACGTCACCATCCCCTTTCATCGTACGGTCATTAATTCCAGCATCTCTCATCATCAACGGCTCTCACCATCCCTTCCAGAGTGTTCGAATCTGAAAGGCCAGAGCAAGAGAGTGGGTCGGCATGTAACCAGGGTTAGTTGTTTTAACCTGGCTTCTCTCACTCGAGTTAAAGAGCGTTCACAGAGGACGGATTTCTGAGAGGCAAAACGGAGAATAAAAAGAAGAGAGATAGAGATAGAGGAAACTGTGAGAGAATTTGTGTGTGGGTTTCATTTCTCTCTTCACTTAGCTCCGACGATTCTTTGCTCTTGCCTGTTTCTTGGATTTGATATTGATTCATCGAAGGCCTCTCATTCTCGTGTTTGCGAAGCTCTGACGGCGCCGGCTCACGGATAGCGTCGATTTGGGTGGGGAATCTGATTACTTAATTTGTTGGATCTTGAAGGATCTATAGAATTCAGGTGAGTTCTTTCTCCGATTTCGAAGTTGTTACTTTGTAATGCTTGTTTTGTTTGTGAGTATGTGTTGAATGAATGATGGTGTTGTATTTGTTTTTTCTTTCTGTTTACTTGTTTCTCATTGTTGAATTTCATTTCTCTGATCTCCAGAACGTCGTATTGAGCTTGGTCTCTTGTGGATCTTCTCTCCTGCCCCGAGGGGAGGGGGAGGGGGGAGGAGGTGCACCTTTCACAGATTTCGTTTAACTGTTGGAATTTGTTCTTGAGGGCGAATGAGGATCTCGTTCCGATCATTTGTTTGCTTACACGATGAAGTGGTTAGAGAAGAGATCCTTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTATTTCTCTATCACTGGGAGAATCTGTTTTTGGAGTCTTTGGCTCTGGGCCTTGAAATTTTATCGAGACGTTAATTTTCTTCTATAGGGAACACCGTTTTCCCTTCCTTTTATAAACTCAGAACAACGTGTAAGCTAATCGATGAATGTGTATTTCATCCTATCGGCCTTTTGTAACTATTGATTTTTTTTATCTTGCAATAAATTTGGGCTTCCATGTAGAAAGGGCCATAAATAATGCATAATTCAGTGTTCTTGGTGTATGCATTCTTTTGTTGAACTCTAGCCCAGCTCTAGATATGGGGACTCTTATTTGAAAGTCTGGATAAATTCACCTTTGTTTTTGGACATTTGTCCATTGGTAGTTAATTTTGTATCGATATTATTGTTTCTTCAGGTCAATTGTTAATTTTGATTTCTTTGTTTTACTCCCGCAGATAATCAGGTGCTGTGAGTCTGGAGAAATGGATCTGTAG

mRNA sequence

ATGAAACCAGGTGTCCCACAATTCGAGGTGACCTGCCACGTCACTAACGAATCTCTTATCTCCACGTCACCATCCCCTTTCATCGTACGCATCTCTCATCATCAACGGCTCTCACCATCCCTTCCAGAGTGTTCGAATCTGAAAGGCCAGAGCAAGAGAGTGGGTCGGCATGTAACCAGGATAATCAGGTGCTGTGAGTCTGGAGAAATGGATCTGTAG

Coding sequence (CDS)

ATGAAACCAGGTGTCCCACAATTCGAGGTGACCTGCCACGTCACTAACGAATCTCTTATCTCCACGTCACCATCCCCTTTCATCGTACGCATCTCTCATCATCAACGGCTCTCACCATCCCTTCCAGAGTGTTCGAATCTGAAAGGCCAGAGCAAGAGAGTGGGTCGGCATGTAACCAGGATAATCAGGTGCTGTGAGTCTGGAGAAATGGATCTGTAG

Protein sequence

MKPGVPQFEVTCHVTNESLISTSPSPFIVRISHHQRLSPSLPECSNLKGQSKRVGRHVTRIIRCCESGEMDL
Homology
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BLAST of Carg17325 vs. NCBI nr
Match: KAG7013087.1 (hypothetical protein SDJN02_25843, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 152.9 bits (385), Expect = 1.0e-33
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0 

Query: 1  MKPGVPQFEVTCHVTNESLISTSPSPFIVRISHHQRLSPSLPECSNLKGQSKRVGRHVTR 60
          MKPGVPQFEVTCHVTNESLISTSPSPFIVRISHHQRLSPSLPECSNLKGQSKRVGRHVTR
Sbjct: 1  MKPGVPQFEVTCHVTNESLISTSPSPFIVRISHHQRLSPSLPECSNLKGQSKRVGRHVTR 60

Query: 61 IIRCCESGEMDL 73
          IIRCCESGEMDL
Sbjct: 61 IIRCCESGEMDL 72

The following BLAST results are available for this feature:
BLAST of Carg17325 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7013087.11.0e-33100.00hypothetical protein SDJN02_25843, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg17325 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg17325 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg17325 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17325-RACarg17325-RAmRNA