Carg17227 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg17227
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like
Location	Carg_Chr18: 11052683 .. 11056414 (+)
RNA-Seq Expression	Carg17227
Synteny	Carg17227

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGCCAGAGCCAACCACCACCATCTTCTTTCTAAGTGATTAACTCCTTCGGGAGCCTGCGTCCAGTTTCCGACCAAAATTGAGCTTTCCTTAGCTTCTAATGGCGGCTACTCCAATGAATTCTCTTTCGCTTTCCCATGTCCCTTTCTCCCTTCCAATTCAATCTAAATGTCACTCTTTAGAACAGAAAACTCTATTCCTTCCACTCAGCCCCTTAACGGAGCTGAACCTCGCAATTAAGCGTTCTACTGCCACCCATCCGGTCCCGAAGTTCAGCCGTCGCGCCACCACTGCCACTGTATCATTTAGCCTCCCGGCTTCGTAGGATTTGATTGCCACTCTTGCTTGTGTTATTGATTCTTTTTCAAGCCTATATAACTAAAAATATTTATCTCATTTTGCAGGAAACCCGAGGGCATTTCCCCTGATAAACTCCCGAAGTAAGTCTATTCTCAAAATTTCCCCCATTCAATTGGCGTTTTTCTGCTGCATGTGTTGAGCTTTAATGGTGTTAATTGGAGCTTCTTTGTTTCTTTTCTTCATAATGTGTGAAGGTTATGTTCTAATTGAACCAATATTTTTGAAATTTAATGAGGGCTGATGATCTTTTAGGTTGTATTTTAACTTTAGTCCTTAACAATAAGTTTAGGACTTCAATTTTAATCTTTAAGGCTTCTTTGGGAGCTTTGCAATTAATTTTAAGGACTGCAGTTGATAAAACTGAAAGGTTAAAATTGTTGTGCATTTGAAACTACTCGCAGACATGTTGAGCCAAGTAGAATGATTTCTTCTTATGTTTCTCCTTTTGGTTGTGTTTCTTTTTTTCATCTATCTAAATTGATTTTCCAGGATGTTAGCTCATCATAGCTGTTGAATCATTTGTTAAATGACTTCTTCTTCTTCTCAGCATTAGACTGCCAATTAATGCAGAAATGATATTGGTGTTAATTGGGATTATTGTTTGTTGAATTTGTGATGTATAAGATGGTCGGCAAGAGCAATTAAGTCATTTGCAATGGCAGAATTAGAGGCAAGGAAACTCAAATATCCAAATACAGGCACAGAAGCATTGCTAATGGGAATTTTAAATGAGGGTTAGCAGCTGTTCCAGCTCTGAAATCATTTATTATTTGCATCTAAATTTGGACTTTCAAATTGATATAGTTTACTTGAATGCATTTAAGTTGAGAAGTATCTGAATTTTGAACCTTCTTTTTAAAGAAAAAAATAGGCTAAAATCTAGATCGGCTACTTTGTCCCTCACCCCTTTCCAGCATTGTTTCATGATATCTTGCATTGTCATCTGATATCCCTCATGTTCAGCTTCAGATTGTTTTTGGAAGACTTATTTATGTTAAGAGTTCGACATTGAAGCTTATGTTCATGTCAACTCCTGTCAGCTGATGATTATGAGTAACCTATCTTTGACAGTGTCCTTAGGTCACTGGCCACATGCTTTTTGATTGTCCTTATGCTTAATTGCTACCAAGTACCAATATGCTGAAGTGAATTGACAATTTTCATCCTTGTTCAGTAGAAAAGGGGGTTAGGATATAAAATAATAAACTATAGGTGCATTTTCATGGTTGTAATCTAGTCTATTGCTTCAGTGCTTGATAATTTTCATTTTCCTTAAGGTAAGGTATATTTCTTCACATTTTTTCAGGAACAAGTATAGCTGCTAAGTTCTTAAGGGCTAATGGAATTACACTTTTCAAGGTAAGAGAAGAAACTGTCAAGCTACTTGGAAAATCTGACATGTATTTCTTCAGCCCAGAACATCCTCCATTGACTGAACCTGCTCAGAGGGTGCTTGATTGGGCTGTCGCAAAGAAAGTAGAGTCAGGTGAGATCATGCTTCCTAATCATACAGCAAATCCAATTCTTATTTCTCCTGTAATTGAATGATCATACTTGTGTTTTCTACTTAGACCTCTATGCATGCTACTTCTAAGCTTCCATTTTAAAGAATGAGATGTTAGGATGAGTTTTGACTCCTGATCGAATCAATTTTTTAGTATTTCCTATTCTGTGTTCAAACAAGGACCTAATTGGCAGAGGAAAACAGATGAAGGGAGGTTATGCGTTTTTCTGTCAGACCCTTTGACTAATTGAGTGGGAAGGAAGTAAATCAAATAATTCTTCAATTTCCAGATTATGCTAGCTGTCGCACTCAAGTAAAGGATGGGTACATGAATGAATCGGGACCATATCAGAATGAGAGTGATCTTGAGGACGAAATGACTAAAAAAGGCGTAAACAAATTCAAAGTTACTATACATACCAACAAAGTGCATTTTCCTTTTAGATGGCTCAATCACAGGAACTCTTAAATTAGGTGTGCTTTGTTTGAAACAATGGATGACCTCTTGGAAATTTTTTCAGGAAGTACGTGAGTGAGGACAAAACATGCTGAAAGAACTTGTATTGATCTGTGGGAATAGTCTTCATTCTTAGAAGCAAGAAATAAGTAACGTGACTATGTTGTAGGAGAATGTCAGGCCATTAGGTGAATTTTGGGCATGGGGACGTTACACTAACCGCAATAGAATAGTGAATAAATGCTTTCAGGATGATGCTTGCCACATTTAAGTGGCTGCTACTTCTATCAAAGAGTTTGGAAGCTATGTTGCCTACAGGCAACAAAGACTTGGTTGTAAAGCACATATTTTCTCATTTAGCAACAAGCACCCACATGCAAAGATTTTTGCCGACCTTTTTCACCATTTTAGCGAAGAATGACTTCAATACATCTTATTATCTATTTATTCATAGAACATATACAAATGTGCACAAGTATGTGTGAAGTTCTTAATTGTAGATTTTGACCAGAATGATTATGACGTGCACTTTAGTCTGTACTTTTCTTATGGCAGTCTTCATTTATTGAGCCTAAGATATTGTATGCAGGTCAATCTGGGGAAATAACTGTAGGTCATTTGCTTCTTGGCATTTGGTCAGAGGAATCAGCAGGTCGCAAGATCTTGGCCACCCTTGGCTTTGATGATGAGAAAGCGAAAGAGATTGAAAAAACCGTAAGTGTAAAGTTAATTTCATCTAGCTAGTAAAACCCTCGGGATTTGATAATACACTCCAATAATACATCTTTAATGTTCCCAGGTGGACAAGGATACAACTTTCAGTAAATCGATCGTTTAGGAAGATGTGATGTGATTTTCATATTTTCGTCAATGAAATCCTGACAAAGAAACCCCCAAATGAGATTCATATGATTTGGACCTTTGTGCATTCATTTGGTGATATAGTGATTTGCCTGTTTAATCAGCACCTGCCGTTCAAAGTAATCAGCTTCATTTGGAATTGACTGTTGCTCGAACTTGTGGAGTGCTGGTATGGTACGCTACATTTAAATGGTCTCAAATTGCTTGCGGGACATAGTTTTCTTACTGTAGCTTTGTTTGGACAAGCGACCTGAGTTGAAAAGGGAAATAATAACACCTATAATTAGCACATAAGATTCTTAATTTAATCTTTGCAAGACATCCTCGATTATTTTTAAATTTGAGTATTTAAAATTTTATCTTTGTTTCTTTTATGCTTCTTCATTTATGGGCTCCACCTGCCAAAATTCTAACATTCTTTACATTTTCATATCTCTCACCGGTTTAAGTTTGCTCTCAAATTTTTTGTCCGAGTAAATTCTTTTCTAGTAATGCCCTTGCTGAAACTTCAAGTATTATTTTGGATGTTCAAATTGTATAGTAATATTTGA

mRNA sequence

TAGCCAGAGCCAACCACCACCATCTTCTTTCTAAGTGATTAACTCCTTCGGGAGCCTGCGTCCAGTTTCCGACCAAAATTGAGCTTTCCTTAGCTTCTAATGGCGGCTACTCCAATGAATTCTCTTTCGCTTTCCCATGTCCCTTTCTCCCTTCCAATTCAATCTAAATGTCACTCTTTAGAACAGAAAACTCTATTCCTTCCACTCAGCCCCTTAACGGAGCTGAACCTCGCAATTAAGCGTTCTACTGCCACCCATCCGGTCCCGAAGTTCAGCCGTCGCGCCACCACTGCCACTGTATCATTTAGCCTCCCGGCTTCGAAACCCGAGGGCATTTCCCCTGATAAACTCCCGAAATGGTCGGCAAGAGCAATTAAGTCATTTGCAATGGCAGAATTAGAGGCAAGGAAACTCAAATATCCAAATACAGGCACAGAAGCATTGCTAATGGGAATTTTAAATGAGGGAACAAGTATAGCTGCTAAGTTCTTAAGGGCTAATGGAATTACACTTTTCAAGGTAAGAGAAGAAACTGTCAAGCTACTTGGAAAATCTGACATGTATTTCTTCAGCCCAGAACATCCTCCATTGACTGAACCTGCTCAGAGGGTGCTTGATTGGGCTGTCGCAAAGAAAGTAGAGTCAGGTCAATCTGGGGAAATAACTGTAGGTCATTTGCTTCTTGGCATTTGGTCAGAGGAATCAGCAGGTCGCAAGATCTTGGCCACCCTTGGCTTTGATGATGAGAAAGCGAAAGAGATTGAAAAAACCGTGGACAAGGATACAACTTTCAGTAAATCGATCGTTTAGGAAGATGTGATGTGATTTTCATATTTTCGTCAATGAAATCCTGACAAAGAAACCCCCAAATGAGATTCATATGATTTGGACCTTTGTGCATTCATTTGGTGATATAGTGATTTGCCTGTTTAATCAGCACCTGCCGTTCAAAGTAATCAGCTTCATTTGGAATTGACTGTTGCTCGAACTTGTGGAGTGCTGGTATGGTACGCTACATTTAAATGGTCTCAAATTGCTTGCGGGACATAGTTTTCTTACTGTAGCTTTGTTTGGACAAGCGACCTGAGTTGAAAAGGGAAATAATAACACCTATAATTAGCACATAAGATTCTTAATTTAATCTTTGCAAGACATCCTCGATTATTTTTAAATTTGAGTATTTAAAATTTTATCTTTGTTTCTTTTATGCTTCTTCATTTATGGGCTCCACCTGCCAAAATTCTAACATTCTTTACATTTTCATATCTCTCACCGGTTTAAGTTTGCTCTCAAATTTTTTGTCCGAGTAAATTCTTTTCTAGTAATGCCCTTGCTGAAACTTCAAGTATTATTTTGGATGTTCAAATTGTATAGTAATATTTGA

Coding sequence (CDS)

ATGGCGGCTACTCCAATGAATTCTCTTTCGCTTTCCCATGTCCCTTTCTCCCTTCCAATTCAATCTAAATGTCACTCTTTAGAACAGAAAACTCTATTCCTTCCACTCAGCCCCTTAACGGAGCTGAACCTCGCAATTAAGCGTTCTACTGCCACCCATCCGGTCCCGAAGTTCAGCCGTCGCGCCACCACTGCCACTGTATCATTTAGCCTCCCGGCTTCGAAACCCGAGGGCATTTCCCCTGATAAACTCCCGAAATGGTCGGCAAGAGCAATTAAGTCATTTGCAATGGCAGAATTAGAGGCAAGGAAACTCAAATATCCAAATACAGGCACAGAAGCATTGCTAATGGGAATTTTAAATGAGGGAACAAGTATAGCTGCTAAGTTCTTAAGGGCTAATGGAATTACACTTTTCAAGGTAAGAGAAGAAACTGTCAAGCTACTTGGAAAATCTGACATGTATTTCTTCAGCCCAGAACATCCTCCATTGACTGAACCTGCTCAGAGGGTGCTTGATTGGGCTGTCGCAAAGAAAGTAGAGTCAGGTCAATCTGGGGAAATAACTGTAGGTCATTTGCTTCTTGGCATTTGGTCAGAGGAATCAGCAGGTCGCAAGATCTTGGCCACCCTTGGCTTTGATGATGAGAAAGCGAAAGAGATTGAAAAAACCGTGGACAAGGATACAACTTTCAGTAAATCGATCGTTTAG

Protein sequence

MAATPMNSLSLSHVPFSLPIQSKCHSLEQKTLFLPLSPLTELNLAIKRSTATHPVPKFSRRATTATVSFSLPASKPEGISPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGILNEGTSIAAKFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRVLDWAVAKKVESGQSGEITVGHLLLGIWSEESAGRKILATLGFDDEKAKEIEKTVDKDTTFSKSIV

Homology

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BLAST of Carg17227 vs. NCBI nr
Match: XP_023542985.1 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Cucurbita pepo subsp. pepo] >KAG7013185.1 ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 458.4 bits (1178), Expect = 3.8e-125
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0


Query: 1   MAATPMNSLSLSHVPFSLPIQSKCHSLEQKTLFLPLSPLTELNLAIKRSTATHPVPKFSR 60
           MAATPMNSLSLSHVPFSLPIQSKCHSLEQKTLFLPLSPLTELNLAIKRSTATHPVPKFSR
Sbjct: 1   MAATPMNSLSLSHVPFSLPIQSKCHSLEQKTLFLPLSPLTELNLAIKRSTATHPVPKFSR 60

Query: 61  RATTATVSFSLPASKPEGISPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120
           RATTATVSFSLPASKPEGISPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATTATVSFSLPASKPEGISPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120

Query: 121 NEGTSIAAKFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRVLDWAVAKKV 180
           NEGTSIAAKFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRVLDWAVAKKV
Sbjct: 121 NEGTSIAAKFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRVLDWAVAKKV 180

Query: 181 ESGQSGEITVGHLLLGIWSEESAGRKILATLGFDDEKAKEIEKTVDKDTTFSKSIV 237
           ESGQSGEITVGHLLLGIWSEESAGRKILATLGFDDEKAKEIEKTVDKDTTFSKSIV
Sbjct: 181 ESGQSGEITVGHLLLGIWSEESAGRKILATLGFDDEKAKEIEKTVDKDTTFSKSIV 236

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BLAST of Carg17227 vs. NCBI nr
Match: XP_022968478.1 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 457.2 bits (1175), Expect = 8.5e-125
Identity = 235/236 (99.58%), Postives = 236/236 (100.00%), Query Frame = 0


Query: 1   MAATPMNSLSLSHVPFSLPIQSKCHSLEQKTLFLPLSPLTELNLAIKRSTATHPVPKFSR 60
           MAATPMNSLSLSHVPFSLPIQSKCHSLEQKTLFLPLSPLTELNLAIKRSTATHPVPKFSR
Sbjct: 1   MAATPMNSLSLSHVPFSLPIQSKCHSLEQKTLFLPLSPLTELNLAIKRSTATHPVPKFSR 60

Query: 61  RATTATVSFSLPASKPEGISPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120
           RATTATVSFSLPASKPEGISPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATTATVSFSLPASKPEGISPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120

Query: 121 NEGTSIAAKFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRVLDWAVAKKV 180
           NEGTSIAAKFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRVLDWAVAKKV
Sbjct: 121 NEGTSIAAKFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRVLDWAVAKKV 180

Query: 181 ESGQSGEITVGHLLLGIWSEESAGRKILATLGFDDEKAKEIEKTVDKDTTFSKSIV 237
           ESGQSGEITVGHLLLGIWSEESAGRKILATLGFDDEKAKEIEKTVDKDTTFS+SIV
Sbjct: 181 ESGQSGEITVGHLLLGIWSEESAGRKILATLGFDDEKAKEIEKTVDKDTTFSRSIV 236

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BLAST of Carg17227 vs. NCBI nr
Match: XP_022945169.1 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 456.1 bits (1172), Expect = 1.9e-124
Identity = 235/236 (99.58%), Postives = 235/236 (99.58%), Query Frame = 0


Query: 1   MAATPMNSLSLSHVPFSLPIQSKCHSLEQKTLFLPLSPLTELNLAIKRSTATHPVPKFSR 60
           MAATPMNSLSLSHVPFSLPIQSKCHSLEQKTLFLPLSPLTELNLAIKRSTATHPVPKFSR
Sbjct: 1   MAATPMNSLSLSHVPFSLPIQSKCHSLEQKTLFLPLSPLTELNLAIKRSTATHPVPKFSR 60

Query: 61  RATTATVSFSLPASKPEGISPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120
           RATTATVSFSLPASKPEGISPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATTATVSFSLPASKPEGISPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120

Query: 121 NEGTSIAAKFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRVLDWAVAKKV 180
           NEGTSIAAKFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRVLDWAVAKKV
Sbjct: 121 NEGTSIAAKFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRVLDWAVAKKV 180

Query: 181 ESGQSGEITVGHLLLGIWSEESAGRKILATLGFDDEKAKEIEKTVDKDTTFSKSIV 237
           ESGQ GEITVGHLLLGIWSEESAGRKILATLGFDDEKAKEIEKTVDKDTTFSKSIV
Sbjct: 181 ESGQYGEITVGHLLLGIWSEESAGRKILATLGFDDEKAKEIEKTVDKDTTFSKSIV 236

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BLAST of Carg17227 vs. NCBI nr
Match: KAG6574124.1 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 451.8 bits (1161), Expect = 3.6e-123
Identity = 231/235 (98.30%), Postives = 234/235 (99.57%), Query Frame = 0


Query: 1   MAATPMNSLSLSHVPFSLPIQSKCHSLEQKTLFLPLSPLTELNLAIKRSTATHPVPKFSR 60
           MAATPMNSLSLSHVPFSLPIQSKCHSLEQKTLFLPLSPLTELNLAIKRSTATHPVPKFSR
Sbjct: 1   MAATPMNSLSLSHVPFSLPIQSKCHSLEQKTLFLPLSPLTELNLAIKRSTATHPVPKFSR 60

Query: 61  RATTATVSFSLPASKPEGISPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120
           RATTATVSFSLPASKPEGISPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATTATVSFSLPASKPEGISPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120

Query: 121 NEGTSIAAKFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRVLDWAVAKKV 180
           NEGTSIAAKFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRVLDWAVAKKV
Sbjct: 121 NEGTSIAAKFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRVLDWAVAKKV 180

Query: 181 ESGQSGEITVGHLLLGIWSEESAGRKILATLGFDDEKAKEIEKTVDKDTTFSKSI 236
           ESGQSGEITVGHLLLGIWSEESAGRKILATLGFDDEKAKEIEKTVDKDTTF+ ++
Sbjct: 181 ESGQSGEITVGHLLLGIWSEESAGRKILATLGFDDEKAKEIEKTVDKDTTFTPAV 235

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BLAST of Carg17227 vs. NCBI nr
Match: KAG6576777.1 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014811.1 ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 398.3 bits (1022), Expect = 4.7e-107
Identity = 206/232 (88.79%), Postives = 215/232 (92.67%), Query Frame = 0


Query: 1   MAATPMNSLSLSHVPFSLPIQSKCHSLEQKTLFLPLSPLTELNLAIKRSTATHPVPKFSR 60
           MAAT MNSLSLS VPFSLP QS C+SLE KTLFLP SPL +LNLAIKRS ATH V KF+R
Sbjct: 1   MAATRMNSLSLSLVPFSLPAQSNCYSLEPKTLFLPASPLIQLNLAIKRSNATHSVSKFTR 60

Query: 61  RATTATVSFSLPASKPEGISPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120
           RATTATVSFSLPASKPEG+SPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120

Query: 121 NEGTSIAAKFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRVLDWAVAKKV 180
            EGT+IAA+FLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTE AQR LDWAVA+K+
Sbjct: 121 IEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKL 180

Query: 181 ESGQSGEITVGHLLLGIWSEESAGRKILATLGFDDEKAKEIEKTVDKDTTFS 233
           +SGQSGEIT GHLLL IWSEESAGRKILATLGFDDEKAKEIEKTVD D TFS
Sbjct: 181 KSGQSGEITTGHLLLAIWSEESAGRKILATLGFDDEKAKEIEKTVDNDATFS 232

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BLAST of Carg17227 vs. ExPASy Swiss-Prot
Match: Q93WL3 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPT1 PE=1 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 2.6e-60
Identity = 123/201 (61.19%), Postives = 156/201 (77.61%), Query Frame = 0


Query: 38  PLTELNLAIKRSTATHP-----VPKFSRRATTATVSFSLPASKPEGISPDKLPKWSARAI 97
           PLT  +L  K+  AT P     VPK  R  T+A+   ++P ++PE  S DK+PKWSARAI
Sbjct: 34  PLTS-SLLGKKLLATQPSHRCFVPKL-RCLTSASTVLNVPIAQPENGSSDKIPKWSARAI 93

Query: 98  KSFAMAELEARKLKYPNTGTEALLMGILNEGTSIAAKFLRANGITLFKVREETVKLLGKS 157
           KS AM ELEARKLKYP+TGTEA+LMGIL EGTS  AKFLR NG+TLFKVR+ET+ LLGKS
Sbjct: 94  KSLAMGELEARKLKYPSTGTEAILMGILVEGTSTVAKFLRGNGVTLFKVRDETLSLLGKS 153

Query: 158 DMYFFSPEHPPLTEPAQRVLDWAVAKKVESGQSGEITVGHLLLGIWSE-ESAGRKILATL 217
           DMYFFSPEHPPLTEPAQ+ + WA+ +K +S   GE+T  +LLLG+WS+ +SAGR+IL  L
Sbjct: 154 DMYFFSPEHPPLTEPAQKAIAWAIDEKNKSDVDGELTTAYLLLGVWSQKDSAGRQILEKL 213

Query: 218 GFDDEKAKEIEKTVDKDTTFS 233
           GF+++KAKE+EK++++D   S
Sbjct: 214 GFNEDKAKEVEKSMNEDVDLS 232

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BLAST of Carg17227 vs. ExPASy Swiss-Prot
Match: Q8GW78 (ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPT2 PE=1 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 4.3e-55
Identity = 130/218 (59.63%), Postives = 152/218 (69.72%), Query Frame = 0


Query: 19  PIQSKCHSLEQKTLFLPL------SPLTELNLAIKRS--TATHPVPKFS----RRATTAT 78
           PI S+  S  +K L +PL        LT   L +  S  + T PV        RR   + 
Sbjct: 14  PIISQIDSFSKKKLSVPLYFFSTRKALTNPWLGVVDSSLSLTSPVSALQTNRPRRIHKSA 73

Query: 79  VSFSLPASKPEGISPD-KLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGILNEGTS 138
           +S SLP + P+ +  D K PKWS RAIKSFAM ELEARKLKYPNTGTEALLMGIL EGTS
Sbjct: 74  IS-SLPTANPDLVVSDAKKPKWSWRAIKSFAMGELEARKLKYPNTGTEALLMGILIEGTS 133

Query: 139 IAAKFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRVLDWAVAKKVESGQS 198
             +KFLRAN I L+KVREETVKLLGK+DMYFFSPEHPPLTE AQR LD A+ + +++G  
Sbjct: 134 FTSKFLRANKIMLYKVREETVKLLGKADMYFFSPEHPPLTEDAQRALDSALDQNLKAGGI 193

Query: 199 GEITVGHLLLGIWSE-ESAGRKILATLGFDDEKAKEIE 223
           GE+   H+LLGIWSE ES G KILATLGF DEK+KE+E
Sbjct: 194 GEVMPAHILLGIWSEVESPGHKILATLGFTDEKSKELE 230

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BLAST of Carg17227 vs. ExPASy Swiss-Prot
Match: Q7F9I1 (Chaperone protein ClpC1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CLPC1 PE=2 SV=2)

HSP 1 Score: 76.6 bits (187), Expect = 4.1e-13
Identity = 51/140 (36.43%), Postives = 79/140 (56.43%), Query Frame = 0


Query: 78  GISPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGILNEGTSIAAKFLRANGIT 137
           G+      +++ +AIK   +A+ EAR+L +   GTE +L+G++ EGT IAAK L++ GI 
Sbjct: 82  GVVRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGIN 141

Query: 138 LFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRVLDWAVAKKVESGQSGEITVG--HLLL 197
           L   R E  K++G+     F     P T  A+RVL+ ++    E+ Q G   +G  HLLL
Sbjct: 142 LKDARVEVEKIIGRGS--GFVAVEIPFTPRAKRVLELSLE---EARQLGHNYIGSEHLLL 201

Query: 198 GIWSE-ESAGRKILATLGFD 215
           G+  E E    ++L +LG D
Sbjct: 202 GLLREGEGVAARVLESLGAD 216

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BLAST of Carg17227 vs. ExPASy Swiss-Prot
Match: P46523 (ATP-dependent Clp protease ATP-binding subunit ClpA homolog, chloroplastic (Fragment) OS=Brassica napus OX=3708 GN=CLPA PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.3e-13
Identity = 53/151 (35.10%), Postives = 83/151 (54.97%), Query Frame = 0


Query: 68  SFSLPASK-PEGISPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGILNEGTSI 127
           + ++P  K   G+      +++ +AIK   +A+ EAR+L +   GTE +L+G++ EGT I
Sbjct: 25  AMNVPKGKGSRGVVKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGI 84

Query: 128 AAKFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRVLDWAVAKKVESGQSG 187
           AAK L++ GI L   R E  K++G+     F     P T  A+RVL+ ++    E+ Q G
Sbjct: 85  AAKVLKSMGINLKDARVEVEKIIGRGS--GFVAVEIPFTPRAKRVLELSLE---EARQLG 144

Query: 188 EITVG--HLLLGIWSE-ESAGRKILATLGFD 215
              +G  HLLLG+  E E    ++L  LG D
Sbjct: 145 HNYIGSEHLLLGLLREGEGVAARVLENLGAD 170

[Close]

BLAST of Carg17227 vs. ExPASy Swiss-Prot
Match: Q2QVG9 (Chaperone protein ClpC2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CLPC2 PE=2 SV=2)

HSP 1 Score: 76.3 bits (186), Expect = 5.3e-13
Identity = 62/192 (32.29%), Postives = 100/192 (52.08%), Query Frame = 0


Query: 26  SLEQKTLFLPLSPLTELNLAIKRSTATHPVPKFSRRATTATVSFSLPASKPEGISPDKLP 85
           S+   +L  P+     + L    S +  PV  F  R+T A+   S    +   ++     
Sbjct: 34  SMLAMSLSRPVKMAAFVGLRSVHSFSVTPVTNF--RSTVASYR-SRRGRRARFVTRSMFE 93

Query: 86  KWSARAIKSFAMAELEARKLKYPNTGTEALLMGILNEGTSIAAKFLRANGITLFKVREET 145
           +++ +AIK   +A+ EAR+L +   GTE +L+G++ EGT IAAK L++ GI L   R E 
Sbjct: 94  RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEV 153

Query: 146 VKLLGKSDMYFFSPEHPPLTEPAQRVLDWAVAKKVESGQSGEITVG--HLLLGIWSE-ES 205
            K++G+ +   F     P T  A+RVL+ ++    E+ Q G   +G  HLLLG+  E E 
Sbjct: 154 EKIIGRGN--GFVAVEIPFTPRAKRVLELSLE---EARQLGHNYIGSEHLLLGLLREGEG 213

Query: 206 AGRKILATLGFD 215
              ++L +LG D
Sbjct: 214 VAARVLESLGAD 217

[Close]

BLAST of Carg17227 vs. ExPASy TrEMBL
Match: A0A6J1HY47 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111467707 PE=4 SV=1)

HSP 1 Score: 457.2 bits (1175), Expect = 4.1e-125
Identity = 235/236 (99.58%), Postives = 236/236 (100.00%), Query Frame = 0


Query: 1   MAATPMNSLSLSHVPFSLPIQSKCHSLEQKTLFLPLSPLTELNLAIKRSTATHPVPKFSR 60
           MAATPMNSLSLSHVPFSLPIQSKCHSLEQKTLFLPLSPLTELNLAIKRSTATHPVPKFSR
Sbjct: 1   MAATPMNSLSLSHVPFSLPIQSKCHSLEQKTLFLPLSPLTELNLAIKRSTATHPVPKFSR 60

Query: 61  RATTATVSFSLPASKPEGISPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120
           RATTATVSFSLPASKPEGISPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATTATVSFSLPASKPEGISPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120

Query: 121 NEGTSIAAKFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRVLDWAVAKKV 180
           NEGTSIAAKFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRVLDWAVAKKV
Sbjct: 121 NEGTSIAAKFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRVLDWAVAKKV 180

Query: 181 ESGQSGEITVGHLLLGIWSEESAGRKILATLGFDDEKAKEIEKTVDKDTTFSKSIV 237
           ESGQSGEITVGHLLLGIWSEESAGRKILATLGFDDEKAKEIEKTVDKDTTFS+SIV
Sbjct: 181 ESGQSGEITVGHLLLGIWSEESAGRKILATLGFDDEKAKEIEKTVDKDTTFSRSIV 236

[Close]

BLAST of Carg17227 vs. ExPASy TrEMBL
Match: A0A6J1G082 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111449490 PE=4 SV=1)

HSP 1 Score: 456.1 bits (1172), Expect = 9.1e-125
Identity = 235/236 (99.58%), Postives = 235/236 (99.58%), Query Frame = 0


Query: 1   MAATPMNSLSLSHVPFSLPIQSKCHSLEQKTLFLPLSPLTELNLAIKRSTATHPVPKFSR 60
           MAATPMNSLSLSHVPFSLPIQSKCHSLEQKTLFLPLSPLTELNLAIKRSTATHPVPKFSR
Sbjct: 1   MAATPMNSLSLSHVPFSLPIQSKCHSLEQKTLFLPLSPLTELNLAIKRSTATHPVPKFSR 60

Query: 61  RATTATVSFSLPASKPEGISPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120
           RATTATVSFSLPASKPEGISPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATTATVSFSLPASKPEGISPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120

Query: 121 NEGTSIAAKFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRVLDWAVAKKV 180
           NEGTSIAAKFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRVLDWAVAKKV
Sbjct: 121 NEGTSIAAKFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRVLDWAVAKKV 180

Query: 181 ESGQSGEITVGHLLLGIWSEESAGRKILATLGFDDEKAKEIEKTVDKDTTFSKSIV 237
           ESGQ GEITVGHLLLGIWSEESAGRKILATLGFDDEKAKEIEKTVDKDTTFSKSIV
Sbjct: 181 ESGQYGEITVGHLLLGIWSEESAGRKILATLGFDDEKAKEIEKTVDKDTTFSKSIV 236

[Close]

BLAST of Carg17227 vs. ExPASy TrEMBL
Match: A0A6J1CI79 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111011733 PE=4 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 6.6e-107
Identity = 203/232 (87.50%), Postives = 216/232 (93.10%), Query Frame = 0


Query: 1   MAATPMNSLSLSHVPFSLPIQSKCHSLEQKTLFLPLSPLTELNLAIKRSTATHPVPKFSR 60
           MAAT +NSLSLS VPFSL  QS C++LE KTLFLP+SPL EL LAIKRS  TH V KF+R
Sbjct: 1   MAATRLNSLSLSQVPFSLATQSNCYNLEHKTLFLPVSPLFELKLAIKRSNVTHSVSKFTR 60

Query: 61  RATTATVSFSLPASKPEGISPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120
           RATTATVSFSLPA+KPEG+SPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATTATVSFSLPATKPEGVSPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120

Query: 121 NEGTSIAAKFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRVLDWAVAKKV 180
            EGTSIAA+FLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQR LDWAVA+K+
Sbjct: 121 IEGTSIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAEKL 180

Query: 181 ESGQSGEITVGHLLLGIWSEESAGRKILATLGFDDEKAKEIEKTVDKDTTFS 233
           +SG+SGEIT GHLLLGIWSEESAGRKILATLGFDDEKAKEIEK+VDKD TFS
Sbjct: 181 KSGESGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEIEKSVDKDATFS 232

[Close]

BLAST of Carg17227 vs. ExPASy TrEMBL
Match: A0A6J1E4F8 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111430678 PE=4 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 7.3e-106
Identity = 204/232 (87.93%), Postives = 214/232 (92.24%), Query Frame = 0


Query: 1   MAATPMNSLSLSHVPFSLPIQSKCHSLEQKTLFLPLSPLTELNLAIKRSTATHPVPKFSR 60
           MAAT MNSLSLS VP SLP QS C+SLE KTLFLP+SPL +LNLAIKRS ATH V KF+R
Sbjct: 1   MAATRMNSLSLSLVPCSLPAQSNCYSLEPKTLFLPVSPLIQLNLAIKRSNATHSVSKFTR 60

Query: 61  RATTATVSFSLPASKPEGISPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120
           RATTATVSFSLPASKPEG+SPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120

Query: 121 NEGTSIAAKFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRVLDWAVAKKV 180
            EGT+IAA+FLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTE AQR LDWAVA+K+
Sbjct: 121 IEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKL 180

Query: 181 ESGQSGEITVGHLLLGIWSEESAGRKILATLGFDDEKAKEIEKTVDKDTTFS 233
           +SGQSGEIT GHLLL IWSEESAGRKILATLGFD EKAKEIEKTVD D TFS
Sbjct: 181 KSGQSGEITTGHLLLAIWSEESAGRKILATLGFDGEKAKEIEKTVDNDATFS 232

[Close]

BLAST of Carg17227 vs. ExPASy TrEMBL
Match: A0A5D3E3F8 (ATP-dependent Clp protease ATP-binding subunit CLPT1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1044G00010 PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 2.1e-105
Identity = 201/232 (86.64%), Postives = 211/232 (90.95%), Query Frame = 0


Query: 1   MAATPMNSLSLSHVPFSLPIQSKCHSLEQKTLFLPLSPLTELNLAIKRSTATHPVPKFSR 60
           MAAT +NSLS S +P SLP QS C+SLE K L  PL+PL EL LAIKRS ATHPV KF+R
Sbjct: 1   MAATRLNSLSFSQLPLSLPSQSNCYSLEHKPLLFPLTPLIELKLAIKRSNATHPVSKFTR 60

Query: 61  RATTATVSFSLPASKPEGISPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120
           RAT ATVSFSLPASKPEG+SP+KLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATAATVSFSLPASKPEGVSPEKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120

Query: 121 NEGTSIAAKFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRVLDWAVAKKV 180
            EGTS AAKFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQR LDWAVA+K+
Sbjct: 121 IEGTSTAAKFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAEKL 180

Query: 181 ESGQSGEITVGHLLLGIWSEESAGRKILATLGFDDEKAKEIEKTVDKDTTFS 233
           +SGQSGEIT GHLLLGIWSEESAGRKILATLGFDDEKAKEI KTVDKD TFS
Sbjct: 181 KSGQSGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEIAKTVDKDATFS 232

[Close]

BLAST of Carg17227 vs. TAIR 10
Match: AT4G25370.1 (Double Clp-N motif protein )

HSP 1 Score: 233.4 bits (594), Expect = 1.9e-61
Identity = 123/201 (61.19%), Postives = 156/201 (77.61%), Query Frame = 0


Query: 38  PLTELNLAIKRSTATHP-----VPKFSRRATTATVSFSLPASKPEGISPDKLPKWSARAI 97
           PLT  +L  K+  AT P     VPK  R  T+A+   ++P ++PE  S DK+PKWSARAI
Sbjct: 34  PLTS-SLLGKKLLATQPSHRCFVPKL-RCLTSASTVLNVPIAQPENGSSDKIPKWSARAI 93

Query: 98  KSFAMAELEARKLKYPNTGTEALLMGILNEGTSIAAKFLRANGITLFKVREETVKLLGKS 157
           KS AM ELEARKLKYP+TGTEA+LMGIL EGTS  AKFLR NG+TLFKVR+ET+ LLGKS
Sbjct: 94  KSLAMGELEARKLKYPSTGTEAILMGILVEGTSTVAKFLRGNGVTLFKVRDETLSLLGKS 153

Query: 158 DMYFFSPEHPPLTEPAQRVLDWAVAKKVESGQSGEITVGHLLLGIWSE-ESAGRKILATL 217
           DMYFFSPEHPPLTEPAQ+ + WA+ +K +S   GE+T  +LLLG+WS+ +SAGR+IL  L
Sbjct: 154 DMYFFSPEHPPLTEPAQKAIAWAIDEKNKSDVDGELTTAYLLLGVWSQKDSAGRQILEKL 213

Query: 218 GFDDEKAKEIEKTVDKDTTFS 233
           GF+++KAKE+EK++++D   S
Sbjct: 214 GFNEDKAKEVEKSMNEDVDLS 232

[Close]

BLAST of Carg17227 vs. TAIR 10
Match: AT4G12060.1 (Double Clp-N motif protein )

HSP 1 Score: 216.1 bits (549), Expect = 3.1e-56
Identity = 130/218 (59.63%), Postives = 152/218 (69.72%), Query Frame = 0


Query: 19  PIQSKCHSLEQKTLFLPL------SPLTELNLAIKRS--TATHPVPKFS----RRATTAT 78
           PI S+  S  +K L +PL        LT   L +  S  + T PV        RR   + 
Sbjct: 14  PIISQIDSFSKKKLSVPLYFFSTRKALTNPWLGVVDSSLSLTSPVSALQTNRPRRIHKSA 73

Query: 79  VSFSLPASKPEGISPD-KLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGILNEGTS 138
           +S SLP + P+ +  D K PKWS RAIKSFAM ELEARKLKYPNTGTEALLMGIL EGTS
Sbjct: 74  IS-SLPTANPDLVVSDAKKPKWSWRAIKSFAMGELEARKLKYPNTGTEALLMGILIEGTS 133

Query: 139 IAAKFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRVLDWAVAKKVESGQS 198
             +KFLRAN I L+KVREETVKLLGK+DMYFFSPEHPPLTE AQR LD A+ + +++G  
Sbjct: 134 FTSKFLRANKIMLYKVREETVKLLGKADMYFFSPEHPPLTEDAQRALDSALDQNLKAGGI 193

Query: 199 GEITVGHLLLGIWSE-ESAGRKILATLGFDDEKAKEIE 223
           GE+   H+LLGIWSE ES G KILATLGF DEK+KE+E
Sbjct: 194 GEVMPAHILLGIWSEVESPGHKILATLGFTDEKSKELE 230

[Close]

BLAST of Carg17227 vs. TAIR 10
Match: AT5G50920.1 (CLPC homologue 1 )

HSP 1 Score: 75.9 bits (185), Expect = 4.9e-14
Identity = 50/132 (37.88%), Postives = 76/132 (57.58%), Query Frame = 0


Query: 86  KWSARAIKSFAMAELEARKLKYPNTGTEALLMGILNEGTSIAAKFLRANGITLFKVREET 145
           +++ +AIK   +A+ EAR+L +   GTE +L+G++ EGT IAAK L++ GI L   R E 
Sbjct: 97  RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEV 156

Query: 146 VKLLGKSDMYFFSPEHPPLTEPAQRVLDWAVAKKVESGQSGEITVG--HLLLGIWSE-ES 205
            K++G+     F     P T  A+RVL+ ++    E+ Q G   +G  HLLLG+  E E 
Sbjct: 157 EKIIGRGS--GFVAVEIPFTPRAKRVLELSLE---EARQLGHNYIGSEHLLLGLLREGEG 216

Query: 206 AGRKILATLGFD 215
              ++L  LG D
Sbjct: 217 VAARVLENLGAD 223

[Close]

BLAST of Carg17227 vs. TAIR 10
Match: AT3G48870.1 (Clp ATPase )

HSP 1 Score: 72.8 bits (177), Expect = 4.2e-13
Identity = 51/154 (33.12%), Postives = 86/154 (55.84%), Query Frame = 0


Query: 86  KWSARAIKSFAMAELEARKLKYPNTGTEALLMGILNEGTSIAAKFLRANGITLFKVREET 145
           +++ +AIK   +++ EAR+L +   GTE +L+G++ EGT IAAK L++ GI L   R E 
Sbjct: 117 RFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDSRVEV 176

Query: 146 VKLLGKSDMYFFSPEHPPLTEPAQRVLDWAVAKKVESGQSGEITVG--HLLLGIWSE-ES 205
            K++G+     F     P T  A+RVL+ ++    E+ Q G   +G  HLLLG+  E E 
Sbjct: 177 EKIIGRGS--GFVAVEIPFTPRAKRVLELSLE---EARQLGHNYIGSEHLLLGLLREGEG 236

Query: 206 AGRKILATLGFDDEKAK-EIEKTVDKDTTFSKSI 236
              ++L  LG D    + ++ + V ++   + S+
Sbjct: 237 VAARVLENLGADPSNIRTQVIRMVGENNEVTASV 265

[Close]

BLAST of Carg17227 vs. TAIR 10
Match: AT3G48870.2 (Clp ATPase )

HSP 1 Score: 72.8 bits (177), Expect = 4.2e-13
Identity = 51/154 (33.12%), Postives = 86/154 (55.84%), Query Frame = 0


Query: 86  KWSARAIKSFAMAELEARKLKYPNTGTEALLMGILNEGTSIAAKFLRANGITLFKVREET 145
           +++ +AIK   +++ EAR+L +   GTE +L+G++ EGT IAAK L++ GI L   R E 
Sbjct: 86  RFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDSRVEV 145

Query: 146 VKLLGKSDMYFFSPEHPPLTEPAQRVLDWAVAKKVESGQSGEITVG--HLLLGIWSE-ES 205
            K++G+     F     P T  A+RVL+ ++    E+ Q G   +G  HLLLG+  E E 
Sbjct: 146 EKIIGRGS--GFVAVEIPFTPRAKRVLELSLE---EARQLGHNYIGSEHLLLGLLREGEG 205

Query: 206 AGRKILATLGFDDEKAK-EIEKTVDKDTTFSKSI 236
              ++L  LG D    + ++ + V ++   + S+
Sbjct: 206 VAARVLENLGADPSNIRTQVIRMVGENNEVTASV 234

The following BLAST results are available for this feature:

BLAST of Carg17227 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023542985.1	3.8e-125	100.00	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Cucurb...	[more]
XP_022968478.1	8.5e-125	99.58	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Cucurb...	[more]
XP_022945169.1	1.9e-124	99.58	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Cucurb...	[more]
KAG6574124.1	3.6e-123	98.30	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic, partial [Cu...	[more]
KAG6576777.1	4.7e-107	88.79	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic, partial [Cu...	[more]

BLAST of Carg17227 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93WL3	2.6e-60	61.19	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic OS=Arabidops...	[more]
Q8GW78	4.3e-55	59.63	ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic OS=Arabidops...	[more]
Q7F9I1	4.1e-13	36.43	Chaperone protein ClpC1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
P46523	5.3e-13	35.10	ATP-dependent Clp protease ATP-binding subunit ClpA homolog, chloroplastic (Frag...	[more]
Q2QVG9	5.3e-13	32.29	Chaperone protein ClpC2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 ...	[more]

BLAST of Carg17227 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HY47	4.1e-125	99.58	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucu...	[more]
A0A6J1G082	9.1e-125	99.58	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucu...	[more]
A0A6J1CI79	6.6e-107	87.50	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Momo...	[more]
A0A6J1E4F8	7.3e-106	87.93	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucu...	[more]
A0A5D3E3F8	2.1e-105	86.64	ATP-dependent Clp protease ATP-binding subunit CLPT1 OS=Cucumis melo var. makuwa...	[more]

BLAST of Carg17227 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G25370.1	1.9e-61	61.19	Double Clp-N motif protein	[more]
AT4G12060.1	3.1e-56	59.63	Double Clp-N motif protein	[more]
AT5G50920.1	4.9e-14	37.88	CLPC homologue 1	[more]
AT3G48870.1	4.2e-13	33.12	Clp ATPase	[more]
AT3G48870.2	4.2e-13	33.12	Clp ATPase	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004176	Clp, repeat (R) domain	PFAM	PF02861	Clp_N	coord: 98..150 e-value: 9.7E-11 score: 41.6 coord: 185..223 e-value: 8.0E-7 score: 29.1
IPR004176	Clp, repeat (R) domain	PROSITE	PS51903	CLP_R	coord: 84..228 score: 30.499403
IPR036628	Clp, N-terminal domain superfamily	GENE3D	1.10.1780.10		coord: 86..234 e-value: 3.1E-43 score: 149.3
IPR036628	Clp, N-terminal domain superfamily	SUPERFAMILY	81923	Double Clp-N motif	coord: 86..218
None	No IPR available	PANTHER	PTHR47016:SF1	ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC	coord: 13..232
IPR044217	ATP-dependent Clp protease ATP-binding subunit CLPT1/2	PANTHER	PTHR47016	ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC	coord: 13..232

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17227-RA	Carg17227-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0009532	plastid stroma
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008233	peptidase activity