Carg17218 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg17218
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr01: 13020139 .. 13020744 (+)
RNA-Seq ExpressionCarg17218
SyntenyCarg17218
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCTTTTTCCCAGAGCGGCCTCCGCCTTAATTTTCCACAACCCGCCCAAAAGTCCTGGCAGGGAGAACCGCCAAGTAAAGATCTCGATCATACCAAAAGAAGCGCAGTCCAAATCGAATAGCTCGGGATTCGAGACGCCGGAGCCAACTTCGCCGAAAGTTTCGTGCATCGGCCAAATCAAGCACAAGAAGAAGATGAAGGAAATAGCGAGGAATGCTGCTAAAATTTCCCAGCCGAAAAAGCGGCATCCGCCGTCGGTTATTAAGAGAATTTTGACCGGTGGGAAAATACTCGGGAGGGCGAAATCAAACCATGTGGCGGCTCCATCGAGAAACCACCGTGGTGGTGGGAAGCCACCGCGGTTGAATCAGATGAAGCGATTCTCAAGTGGACGTGACACGTTGGCGAGTTTTGATTGGACGGCGCAGATTGTACCAGCTGACTTGGAAGGAGAGGAGCCGGAGGGCGATGGGCGGAGTCCGTTGTCGGAGACAGTGTGGATCGGAGAAGACGTGGGCCCACTGCAACCCAGAAAGGAGGTGAATATATGGAAGAGAAGAACCGCCGTTCCTCCCACACCTCTTCAACTCAATTCCAGTTGA

mRNA sequence

ATGAAGCTTTTTCCCAGAGCGGCCTCCGCCTTAATTTTCCACAACCCGCCCAAAAGTCCTGGCAGGGAGAACCGCCAAGTAAAGATCTCGATCATACCAAAAGAAGCGCAGTCCAAATCGAATAGCTCGGGATTCGAGACGCCGGAGCCAACTTCGCCGAAAGTTTCGTGCATCGGCCAAATCAAGCACAAGAAGAAGATGAAGGAAATAGCGAGGAATGCTGCTAAAATTTCCCAGCCGAAAAAGCGGCATCCGCCGTCGGTTATTAAGAGAATTTTGACCGGTGGGAAAATACTCGGGAGGGCGAAATCAAACCATGTGGCGGCTCCATCGAGAAACCACCGTGGTGGTGGGAAGCCACCGCGGTTGAATCAGATGAAGCGATTCTCAAGTGGACGTGACACGTTGGCGAGTTTTGATTGGACGGCGCAGATTGTACCAGCTGACTTGGAAGGAGAGGAGCCGGAGGGCGATGGGCGGAGTCCGTTGTCGGAGACAGTGTGGATCGGAGAAGACGTGGGCCCACTGCAACCCAGAAAGGAGGTGAATATATGGAAGAGAAGAACCGCCGTTCCTCCCACACCTCTTCAACTCAATTCCAGTTGA

Coding sequence (CDS)

ATGAAGCTTTTTCCCAGAGCGGCCTCCGCCTTAATTTTCCACAACCCGCCCAAAAGTCCTGGCAGGGAGAACCGCCAAGTAAAGATCTCGATCATACCAAAAGAAGCGCAGTCCAAATCGAATAGCTCGGGATTCGAGACGCCGGAGCCAACTTCGCCGAAAGTTTCGTGCATCGGCCAAATCAAGCACAAGAAGAAGATGAAGGAAATAGCGAGGAATGCTGCTAAAATTTCCCAGCCGAAAAAGCGGCATCCGCCGTCGGTTATTAAGAGAATTTTGACCGGTGGGAAAATACTCGGGAGGGCGAAATCAAACCATGTGGCGGCTCCATCGAGAAACCACCGTGGTGGTGGGAAGCCACCGCGGTTGAATCAGATGAAGCGATTCTCAAGTGGACGTGACACGTTGGCGAGTTTTGATTGGACGGCGCAGATTGTACCAGCTGACTTGGAAGGAGAGGAGCCGGAGGGCGATGGGCGGAGTCCGTTGTCGGAGACAGTGTGGATCGGAGAAGACGTGGGCCCACTGCAACCCAGAAAGGAGGTGAATATATGGAAGAGAAGAACCGCCGTTCCTCCCACACCTCTTCAACTCAATTCCAGTTGA

Protein sequence

MKLFPRAASALIFHNPPKSPGRENRQVKISIIPKEAQSKSNSSGFETPEPTSPKVSCIGQIKHKKKMKEIARNAAKISQPKKRHPPSVIKRILTGGKILGRAKSNHVAAPSRNHRGGGKPPRLNQMKRFSSGRDTLASFDWTAQIVPADLEGEEPEGDGRSPLSETVWIGEDVGPLQPRKEVNIWKRRTAVPPTPLQLNSS
Homology
BLAST of Carg17218 vs. NCBI nr
Match: KAG6608614.1 (hypothetical protein SDJN03_01956, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037931.1 hypothetical protein SDJN02_01563, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 403.7 bits (1036), Expect = 9.5e-109
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0

Query: 1   MKLFPRAASALIFHNPPKSPGRENRQVKISIIPKEAQSKSNSSGFETPEPTSPKVSCIGQ 60
           MKLFPRAASALIFHNPPKSPGRENRQVKISIIPKEAQSKSNSSGFETPEPTSPKVSCIGQ
Sbjct: 1   MKLFPRAASALIFHNPPKSPGRENRQVKISIIPKEAQSKSNSSGFETPEPTSPKVSCIGQ 60

Query: 61  IKHKKKMKEIARNAAKISQPKKRHPPSVIKRILTGGKILGRAKSNHVAAPSRNHRGGGKP 120
           IKHKKKMKEIARNAAKISQPKKRHPPSVIKRILTGGKILGRAKSNHVAAPSRNHRGGGKP
Sbjct: 61  IKHKKKMKEIARNAAKISQPKKRHPPSVIKRILTGGKILGRAKSNHVAAPSRNHRGGGKP 120

Query: 121 PRLNQMKRFSSGRDTLASFDWTAQIVPADLEGEEPEGDGRSPLSETVWIGEDVGPLQPRK 180
           PRLNQMKRFSSGRDTLASFDWTAQIVPADLEGEEPEGDGRSPLSETVWIGEDVGPLQPRK
Sbjct: 121 PRLNQMKRFSSGRDTLASFDWTAQIVPADLEGEEPEGDGRSPLSETVWIGEDVGPLQPRK 180

Query: 181 EVNIWKRRTAVPPTPLQLNSS 202
           EVNIWKRRTAVPPTPLQLNSS
Sbjct: 181 EVNIWKRRTAVPPTPLQLNSS 201

BLAST of Carg17218 vs. NCBI nr
Match: XP_022940698.1 (uncharacterized protein At1g76070-like [Cucurbita moschata])

HSP 1 Score: 382.9 bits (982), Expect = 1.7e-102
Identity = 198/214 (92.52%), Postives = 199/214 (92.99%), Query Frame = 0

Query: 1   MKLFPRAASALIFHNPPKSPGRENRQ---------VKISIIPKEAQSKSNSSGFETPEPT 60
           MKLFPRAASALIFHNPPKSPGRENRQ         VKISIIPKEAQSKSNSSG ET EPT
Sbjct: 84  MKLFPRAASALIFHNPPKSPGRENRQVAGRGFSGPVKISIIPKEAQSKSNSSGLETLEPT 143

Query: 61  SPKVSCIGQIKHKKKMKEIARN----AAKISQPKKRHPPSVIKRILTGGKILGRAKSNHV 120
           SPKVSCIGQIKHKKKMKEIARN    AAKISQPKKRHPPSVIKRILTGGKILGRAKSNHV
Sbjct: 144 SPKVSCIGQIKHKKKMKEIARNAAAAAAKISQPKKRHPPSVIKRILTGGKILGRAKSNHV 203

Query: 121 AAPSRNHRGGGKPPRLNQMKRFSSGRDTLASFDWTAQIVPADLEGEEPEGDGRSPLSETV 180
           AAPSRNHRGGGKPPRLNQMKRFSSGRDTLASFDWTAQIVPADLEGEEPEGDGRSP+SETV
Sbjct: 204 AAPSRNHRGGGKPPRLNQMKRFSSGRDTLASFDWTAQIVPADLEGEEPEGDGRSPVSETV 263

Query: 181 WIGEDVGPLQPRKEVNIWKRRTAVPPTPLQLNSS 202
           WIGEDVGPLQPRKEVNIWKRRTAVPPTPLQLNSS
Sbjct: 264 WIGEDVGPLQPRKEVNIWKRRTAVPPTPLQLNSS 297

BLAST of Carg17218 vs. NCBI nr
Match: XP_023525484.1 (uncharacterized protein At1g76070-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 379.8 bits (974), Expect = 1.5e-101
Identity = 196/215 (91.16%), Postives = 197/215 (91.63%), Query Frame = 0

Query: 1   MKLFPRAASALIFHNPPKSPGRENRQ---------VKISIIPKEAQSKSNSSGFETPEPT 60
           MKLFPR ASALIFHNPPKSP RENRQ         VKIS IPKEAQSKSNSSGFETPEPT
Sbjct: 14  MKLFPRVASALIFHNPPKSPARENRQVAGRGFSGPVKISTIPKEAQSKSNSSGFETPEPT 73

Query: 61  SPKVSCIGQIKHKKKMKEIARN-----AAKISQPKKRHPPSVIKRILTGGKILGRAKSNH 120
           SPKVSCIGQIKHKKKMKEIARN     AAKISQPKKRHPPSVIKRILTGGKILGRAKSNH
Sbjct: 74  SPKVSCIGQIKHKKKMKEIARNAAAAAAAKISQPKKRHPPSVIKRILTGGKILGRAKSNH 133

Query: 121 VAAPSRNHRGGGKPPRLNQMKRFSSGRDTLASFDWTAQIVPADLEGEEPEGDGRSPLSET 180
           VAAPSRNHRGGGKPPRLNQMKRFSSGRDTLASFDWTAQIVPADLEGEE EGDGRSP+SET
Sbjct: 134 VAAPSRNHRGGGKPPRLNQMKRFSSGRDTLASFDWTAQIVPADLEGEETEGDGRSPVSET 193

Query: 181 VWIGEDVGPLQPRKEVNIWKRRTAVPPTPLQLNSS 202
           VWIGEDVGPLQPRKEVNIWKRRTAVPPTPLQLNSS
Sbjct: 194 VWIGEDVGPLQPRKEVNIWKRRTAVPPTPLQLNSS 228

BLAST of Carg17218 vs. NCBI nr
Match: XP_022982483.1 (uncharacterized protein At1g76070-like [Cucurbita maxima])

HSP 1 Score: 364.4 bits (934), Expect = 6.4e-97
Identity = 193/220 (87.73%), Postives = 195/220 (88.64%), Query Frame = 0

Query: 1   MKLFPRAASALIFHNPPKSPGRENRQ---------VKISIIPKEAQSKSNSSGFETPEPT 60
           MKLFPRAASA IFHNP KSPGRENRQ         VKISIIPKEAQSKSNSSGF+TPEPT
Sbjct: 1   MKLFPRAASAFIFHNPLKSPGRENRQVAGRGFSSPVKISIIPKEAQSKSNSSGFQTPEPT 60

Query: 61  SPKVSCIGQIKHKKKMKEIARN----AAKISQPKKRHPPSVIKRILTGGKILGRAKSNHV 120
           SPKVSCIGQIKHKKKMKEIARN    AAKISQPKKRHPPSVIKRILTGGKILGRAKSN V
Sbjct: 61  SPKVSCIGQIKHKKKMKEIARNAAAAAAKISQPKKRHPPSVIKRILTGGKILGRAKSNDV 120

Query: 121 AAPSRNHRGGGKP------PRLNQMKRFSSGRDTLASFDWTAQIVPADLEGEEPEGDGRS 180
           AAPSRNHRGGGKP      PRLNQMKRFSSGRDTLASFDWTAQIVPADLEGEE EGD RS
Sbjct: 121 AAPSRNHRGGGKPPLPKKAPRLNQMKRFSSGRDTLASFDWTAQIVPADLEGEETEGDWRS 180

Query: 181 PLSETVWIGEDVGPLQPRKEVNIWKRRTAVPPTPLQLNSS 202
           P+SE VWIGEDVGPLQPRKEVNIWKRRTAVPPTPLQLNSS
Sbjct: 181 PVSEAVWIGEDVGPLQPRKEVNIWKRRTAVPPTPLQLNSS 220

BLAST of Carg17218 vs. NCBI nr
Match: XP_038877727.1 (uncharacterized protein At1g76070-like [Benincasa hispida])

HSP 1 Score: 270.4 bits (690), Expect = 1.3e-68
Identity = 146/211 (69.19%), Postives = 163/211 (77.25%), Query Frame = 0

Query: 1   MKLFPRAASALIFHNPPKSPGRENR---------QVKISIIPKEAQSKSNSSGFETPEPT 60
           MK  PRAASA+ F+NPP SPGRE R          + ISIIP+EA+SKSN+SGFETPEPT
Sbjct: 13  MKFLPRAASAVNFNNPPVSPGRETRPLPGRGFSGPMMISIIPREARSKSNNSGFETPEPT 72

Query: 61  SPKVSCIGQIKHKKKMKEIARNAAKISQPKKRHPPSVIKRILTGGKILGRAKSN-HVAAP 120
           SPKVSCIGQIKHKKK+K++A+ AA   + KKRHPPS IKRILTGGK+LGRAKSN   AAP
Sbjct: 73  SPKVSCIGQIKHKKKLKDLAKKAAATVESKKRHPPSGIKRILTGGKVLGRAKSNVAAAAP 132

Query: 121 SRNHRGGGKPPRLNQMKRFSSGRDTLASFDWTAQIVPADLEGEEPEGDGRSPLSETVWIG 180
           S       + P LNQMKRFSSGR  LA+FDWTAQI P D+EGEE  G GR     TVWI 
Sbjct: 133 SGKPPLPERAPGLNQMKRFSSGRGALANFDWTAQIAPDDVEGEEAGGGGR----RTVWID 192

Query: 181 EDVGPLQPRKEVNIWKRRTAVPPTPLQLNSS 202
           E+VGPLQPRKEVNIWKRRT VPPTPLQLNS+
Sbjct: 193 EEVGPLQPRKEVNIWKRRTVVPPTPLQLNST 219

BLAST of Carg17218 vs. ExPASy Swiss-Prot
Match: Q9SGS5 (Uncharacterized protein At1g76070 OS=Arabidopsis thaliana OX=3702 GN=At1g76070 PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.2e-13
Identity = 79/261 (30.27%), Postives = 110/261 (42.15%), Query Frame = 0

Query: 1   MKLFPRAASALIFHNPPKSPGRE------------NRQV----KISIIPKEAQSKSNSSG 60
           +K+ P+A S      PP SPGR+            N+       + ++P  A+ + N S 
Sbjct: 19  LKMLPKAMS-FGHRVPPFSPGRDLHHNNHHNYTAANKMFFSGPMVPLVPNAARVRRNKSD 78

Query: 61  FETPEPTSPKVSCIGQIK-HKKKMKEIARNAA--------------KISQPKKRHPPSVI 120
               EPTSPKVSCIGQIK  K K     +N A               +++  ++   S I
Sbjct: 79  AVWDEPTSPKVSCIGQIKLGKSKCPTGKKNKAPSSLIPKISKTSTSSLTKEDEKGRLSKI 138

Query: 121 KRILTGGKILGR--AKSNHVAAPSRNHR------GGGKPPRLNQMKRFSSGRDTLASFDW 180
           K I +     GR  ++ +H  A S               P L QMK+F+S RD L  FDW
Sbjct: 139 KSIFSFSPASGRNTSRKSHPTAVSAADEHPVTVVSTAAVPSLGQMKKFASSRDALGDFDW 198

Query: 181 TAQI-----VPAD-----------------LEGEEPEGDGRSPLSETVWIGEDVGPLQPR 201
             ++      PAD                  + +E E D   P S  +        L+P+
Sbjct: 199 AVEMKHEEESPADHHRGYYSDDDTRGAYLRYDDDEDEDDIIIPFSAPL-------GLKPK 258

BLAST of Carg17218 vs. ExPASy TrEMBL
Match: A0A6J1FQ15 (uncharacterized protein At1g76070-like OS=Cucurbita moschata OX=3662 GN=LOC111446210 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 8.4e-103
Identity = 198/214 (92.52%), Postives = 199/214 (92.99%), Query Frame = 0

Query: 1   MKLFPRAASALIFHNPPKSPGRENRQ---------VKISIIPKEAQSKSNSSGFETPEPT 60
           MKLFPRAASALIFHNPPKSPGRENRQ         VKISIIPKEAQSKSNSSG ET EPT
Sbjct: 84  MKLFPRAASALIFHNPPKSPGRENRQVAGRGFSGPVKISIIPKEAQSKSNSSGLETLEPT 143

Query: 61  SPKVSCIGQIKHKKKMKEIARN----AAKISQPKKRHPPSVIKRILTGGKILGRAKSNHV 120
           SPKVSCIGQIKHKKKMKEIARN    AAKISQPKKRHPPSVIKRILTGGKILGRAKSNHV
Sbjct: 144 SPKVSCIGQIKHKKKMKEIARNAAAAAAKISQPKKRHPPSVIKRILTGGKILGRAKSNHV 203

Query: 121 AAPSRNHRGGGKPPRLNQMKRFSSGRDTLASFDWTAQIVPADLEGEEPEGDGRSPLSETV 180
           AAPSRNHRGGGKPPRLNQMKRFSSGRDTLASFDWTAQIVPADLEGEEPEGDGRSP+SETV
Sbjct: 204 AAPSRNHRGGGKPPRLNQMKRFSSGRDTLASFDWTAQIVPADLEGEEPEGDGRSPVSETV 263

Query: 181 WIGEDVGPLQPRKEVNIWKRRTAVPPTPLQLNSS 202
           WIGEDVGPLQPRKEVNIWKRRTAVPPTPLQLNSS
Sbjct: 264 WIGEDVGPLQPRKEVNIWKRRTAVPPTPLQLNSS 297

BLAST of Carg17218 vs. ExPASy TrEMBL
Match: A0A6J1J4Y0 (uncharacterized protein At1g76070-like OS=Cucurbita maxima OX=3661 GN=LOC111481291 PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 3.1e-97
Identity = 193/220 (87.73%), Postives = 195/220 (88.64%), Query Frame = 0

Query: 1   MKLFPRAASALIFHNPPKSPGRENRQ---------VKISIIPKEAQSKSNSSGFETPEPT 60
           MKLFPRAASA IFHNP KSPGRENRQ         VKISIIPKEAQSKSNSSGF+TPEPT
Sbjct: 1   MKLFPRAASAFIFHNPLKSPGRENRQVAGRGFSSPVKISIIPKEAQSKSNSSGFQTPEPT 60

Query: 61  SPKVSCIGQIKHKKKMKEIARN----AAKISQPKKRHPPSVIKRILTGGKILGRAKSNHV 120
           SPKVSCIGQIKHKKKMKEIARN    AAKISQPKKRHPPSVIKRILTGGKILGRAKSN V
Sbjct: 61  SPKVSCIGQIKHKKKMKEIARNAAAAAAKISQPKKRHPPSVIKRILTGGKILGRAKSNDV 120

Query: 121 AAPSRNHRGGGKP------PRLNQMKRFSSGRDTLASFDWTAQIVPADLEGEEPEGDGRS 180
           AAPSRNHRGGGKP      PRLNQMKRFSSGRDTLASFDWTAQIVPADLEGEE EGD RS
Sbjct: 121 AAPSRNHRGGGKPPLPKKAPRLNQMKRFSSGRDTLASFDWTAQIVPADLEGEETEGDWRS 180

Query: 181 PLSETVWIGEDVGPLQPRKEVNIWKRRTAVPPTPLQLNSS 202
           P+SE VWIGEDVGPLQPRKEVNIWKRRTAVPPTPLQLNSS
Sbjct: 181 PVSEAVWIGEDVGPLQPRKEVNIWKRRTAVPPTPLQLNSS 220

BLAST of Carg17218 vs. ExPASy TrEMBL
Match: A0A6J1CF28 (uncharacterized protein At1g76070 OS=Momordica charantia OX=3673 GN=LOC111010137 PE=4 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 1.8e-68
Identity = 149/210 (70.95%), Postives = 167/210 (79.52%), Query Frame = 0

Query: 1   MKLFPRAASALIFHNPPKSPGRE-NRQVKISIIPKEAQSKSNSSGFETPEPTSPKVSCIG 60
           MKL PRAASA+ FHNPP SPGR  +  VKISIIP EA++KS +SGFETPEPTSPKVSCIG
Sbjct: 12  MKLLPRAASAVTFHNPPYSPGRGFSGPVKISIIPNEARTKSKNSGFETPEPTSPKVSCIG 71

Query: 61  QIKHKKKMKEIARNAAK--ISQPKKRHPPSVIKRILTGGKILGRAKSNHVAAPSRNHRGG 120
           QIKHKK+MKE+A+  AK  IS+PKK+H PS +KRILTGG++LGRAKSN  A    N RG 
Sbjct: 72  QIKHKKRMKELAKRTAKVEISEPKKQH-PSAVKRILTGGRVLGRAKSNVAAG---NLRGC 131

Query: 121 GKPP-----RLNQMKRFSSGRDTLASFDWTAQIVPADLEGEEPEGD-GRSPLSETVWIGE 180
            KPP      LNQMKRFSSGR  LA+FDWTAQI P     EE EGD GRSP+S  VWIGE
Sbjct: 132 EKPPPAPVLGLNQMKRFSSGRGALANFDWTAQIAP-----EEEEGDGGRSPISAVVWIGE 191

Query: 181 DVGPLQPRKEVNIWKRRTAVPPTPLQLNSS 202
           +VGPLQPRKEVN+WKRRT VPPTPLQLN+S
Sbjct: 192 EVGPLQPRKEVNLWKRRTVVPPTPLQLNTS 212

BLAST of Carg17218 vs. ExPASy TrEMBL
Match: A0A6J1FG08 (uncharacterized protein At1g76070 OS=Cucurbita moschata OX=3662 GN=LOC111443719 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 1.1e-65
Identity = 145/219 (66.21%), Postives = 163/219 (74.43%), Query Frame = 0

Query: 1   MKLFPRAASALIFHNPPKSPGRENRQV---------KISIIPKEAQSKSNSSGFETPEPT 60
           MK  PRAASA+ FHNPP SPGRENR V         KISIIP+EA+SKSN+SGFET EPT
Sbjct: 13  MKFLPRAASAITFHNPPVSPGRENRPVAARGFSGPMKISIIPREARSKSNNSGFETSEPT 72

Query: 61  SPKVSCIGQIKHKKKMKEIAR---NAAKISQPKKRHPPSVIKRILTGGKILGRAKSNHVA 120
           SPKVSCIGQIKHKKKMKE+A+    A +IS+PKKRH PS I+RIL G K+LGRAKSN  A
Sbjct: 73  SPKVSCIGQIKHKKKMKELAKITAAAVEISEPKKRHLPSAIERILIGRKVLGRAKSNVEA 132

Query: 121 APSRNHRGGGKPP------RLNQMKRFSSGRDTLASFDWTAQIVPADLEGEEPEGDGRSP 180
           A        GKPP       LNQMKRFSSGR  L +FDWTAQI PA++EGEE  G G S 
Sbjct: 133 A------SAGKPPLPERALGLNQMKRFSSGRGALTNFDWTAQIAPAEVEGEE-GGGGGSR 192

Query: 181 LSETVWIGEDVGPLQPRKEVNIWKRRTAVPPTPLQLNSS 202
            S  VWIGE++  L+PRKEVNIWKRRT VPPTPLQL+S+
Sbjct: 193 ASTAVWIGEEIVTLEPRKEVNIWKRRTVVPPTPLQLHST 224

BLAST of Carg17218 vs. ExPASy TrEMBL
Match: A0A6J1IFG4 (uncharacterized protein At1g76070 OS=Cucurbita maxima OX=3661 GN=LOC111476771 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 4.1e-65
Identity = 141/213 (66.20%), Postives = 162/213 (76.06%), Query Frame = 0

Query: 1   MKLFPRAASALIFHNPPKSPGRENRQV---------KISIIPKEAQSKSNSSGFETPEPT 60
           MK  PRAASA+ FHNPP SPGRENR V         KISIIP+EA+SKS +S FE+PEPT
Sbjct: 13  MKFLPRAASAITFHNPPVSPGRENRPVAARGFSGPMKISIIPREARSKSKNSEFESPEPT 72

Query: 61  SPKVSCIGQIKHKKKMKEIAR---NAAKISQPKKRHPPSVIKRILTGGKILGRAKSNHVA 120
           SPKVSCIGQIKHKKKMK++A+    A +IS+PKKRH PS I+RIL G K+LGRAKSN  A
Sbjct: 73  SPKVSCIGQIKHKKKMKDLAKITAAAVEISEPKKRHLPSAIERILIGRKVLGRAKSNVEA 132

Query: 121 APSRNHRGGGKPPRLNQMKRFSSGRDTLASFDWTAQIVPADLEGEEPEGDGRSPLSETVW 180
           A +       + P LNQMKRFSSGR  LA+FDWTAQI PA++EGEE  G G S  S  VW
Sbjct: 133 ASAGKPPLPERAPGLNQMKRFSSGRGALANFDWTAQIAPAEVEGEE-GGGGGSRASTAVW 192

Query: 181 IGEDVGPLQPRKEVNIWKRRTAVPPTPLQLNSS 202
           IGE++  LQPRKEVNIWKRRT VPPTPLQL+S+
Sbjct: 193 IGEEIVTLQPRKEVNIWKRRTVVPPTPLQLHST 224

BLAST of Carg17218 vs. TAIR 10
Match: AT1G76070.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20310.1); Has 66 Blast hits to 66 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 78.2 bits (191), Expect = 8.5e-15
Identity = 79/261 (30.27%), Postives = 110/261 (42.15%), Query Frame = 0

Query: 1   MKLFPRAASALIFHNPPKSPGRE------------NRQV----KISIIPKEAQSKSNSSG 60
           +K+ P+A S      PP SPGR+            N+       + ++P  A+ + N S 
Sbjct: 19  LKMLPKAMS-FGHRVPPFSPGRDLHHNNHHNYTAANKMFFSGPMVPLVPNAARVRRNKSD 78

Query: 61  FETPEPTSPKVSCIGQIK-HKKKMKEIARNAA--------------KISQPKKRHPPSVI 120
               EPTSPKVSCIGQIK  K K     +N A               +++  ++   S I
Sbjct: 79  AVWDEPTSPKVSCIGQIKLGKSKCPTGKKNKAPSSLIPKISKTSTSSLTKEDEKGRLSKI 138

Query: 121 KRILTGGKILGR--AKSNHVAAPSRNHR------GGGKPPRLNQMKRFSSGRDTLASFDW 180
           K I +     GR  ++ +H  A S               P L QMK+F+S RD L  FDW
Sbjct: 139 KSIFSFSPASGRNTSRKSHPTAVSAADEHPVTVVSTAAVPSLGQMKKFASSRDALGDFDW 198

Query: 181 TAQI-----VPAD-----------------LEGEEPEGDGRSPLSETVWIGEDVGPLQPR 201
             ++      PAD                  + +E E D   P S  +        L+P+
Sbjct: 199 AVEMKHEEESPADHHRGYYSDDDTRGAYLRYDDDEDEDDIIIPFSAPL-------GLKPK 258

BLAST of Carg17218 vs. TAIR 10
Match: AT1G20310.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76070.1); Has 46 Blast hits to 46 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 64.7 bits (156), Expect = 9.7e-11
Identity = 78/233 (33.48%), Postives = 110/233 (47.21%), Query Frame = 0

Query: 2   KLFPRAASALIFHN-PPKSPGRE----------NRQVKIS--IIPKEAQSKSNSSGFET- 61
           K+  RA S  I H+  P SP R+          NR +  S  ++P  A+ + N+  +E  
Sbjct: 15  KMLQRAMS--IGHSAAPFSPRRDFHQHRTTSTANRGIFFSSPLVPTAARVRRNTK-YEAV 74

Query: 62  -PEPTSPKVSCIGQIK--------HKKKMKEIARNAAKIS----QPKKRHPPSVIKRILT 121
             EPTSPKVSCIGQ+K         K K  +  + A+ +S    + +     S +KRI +
Sbjct: 75  FAEPTSPKVSCIGQVKLARPKCPEKKNKAPKNLKTASSLSSCVIKEEDNGSFSKLKRIFS 134

Query: 122 GGKILGRAKSN---HVAAPSRNH-----RGGGKPPRLNQMKRFSSGRDTLASFDWTAQIV 181
                 R KSN     AA +R H           P L  MK+F+S R+ L  FDWT Q+ 
Sbjct: 135 MRSYPSR-KSNSTAFAAAAAREHPIAEVDAVTAAPSLGAMKKFASSREALGGFDWTVQMK 194

Query: 182 PADLEGEEPEGDGRSPLSETVWIGEDVGPL-QPRKEVNIWKRRTAVPPTPLQL 199
               +   P   G  PL++     ED+    +P+ EVN+WKRRT   P PLQ+
Sbjct: 195 REKEDVMIPCSVG-IPLTQL----EDLSLCPKPKSEVNLWKRRTMDRPKPLQV 238

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6608614.19.5e-109100.00hypothetical protein SDJN03_01956, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022940698.11.7e-10292.52uncharacterized protein At1g76070-like [Cucurbita moschata][more]
XP_023525484.11.5e-10191.16uncharacterized protein At1g76070-like [Cucurbita pepo subsp. pepo][more]
XP_022982483.16.4e-9787.73uncharacterized protein At1g76070-like [Cucurbita maxima][more]
XP_038877727.11.3e-6869.19uncharacterized protein At1g76070-like [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Q9SGS51.2e-1330.27Uncharacterized protein At1g76070 OS=Arabidopsis thaliana OX=3702 GN=At1g76070 P... [more]
Match NameE-valueIdentityDescription
A0A6J1FQ158.4e-10392.52uncharacterized protein At1g76070-like OS=Cucurbita moschata OX=3662 GN=LOC11144... [more]
A0A6J1J4Y03.1e-9787.73uncharacterized protein At1g76070-like OS=Cucurbita maxima OX=3661 GN=LOC1114812... [more]
A0A6J1CF281.8e-6870.95uncharacterized protein At1g76070 OS=Momordica charantia OX=3673 GN=LOC111010137... [more]
A0A6J1FG081.1e-6566.21uncharacterized protein At1g76070 OS=Cucurbita moschata OX=3662 GN=LOC111443719 ... [more]
A0A6J1IFG44.1e-6566.20uncharacterized protein At1g76070 OS=Cucurbita maxima OX=3661 GN=LOC111476771 PE... [more]
Match NameE-valueIdentityDescription
AT1G76070.18.5e-1530.27unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G20310.19.7e-1133.48unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..54
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..54
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 148..172
IPR038796At1g76070-likePANTHERPTHR34779OS09G0542900 PROTEINcoord: 1..200

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17218-RACarg17218-RAmRNA